Wall clock time and date at job start Tue Mar 31 2020 06:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.47007 * 180.02562 * 11 10 9 13 13 C 1.47904 * 110.99802 * 189.84360 * 12 11 10 14 14 C 1.54601 * 102.62540 * 265.48532 * 13 12 11 15 15 H 1.08999 * 110.89229 * 216.06508 * 14 13 12 16 16 C 1.53001 * 110.73890 * 92.80360 * 14 13 12 17 17 C 1.50698 * 109.47003 * 180.13119 * 16 14 13 18 18 O 1.20833 * 119.99963 * 0.02562 * 17 16 14 19 19 O 1.34229 * 120.00184 * 180.02562 * 17 16 14 20 20 C 1.51579 * 102.83530 * 334.46950 * 14 13 12 21 21 C 1.37912 * 131.56163 * 196.34727 * 20 14 13 22 22 C 1.38305 * 120.08050 * 179.28266 * 21 20 14 23 23 C 1.38310 * 119.88519 * 359.97438 * 22 21 20 24 24 C 1.37910 * 120.26097 * 0.11984 * 23 22 21 25 25 C 1.38960 * 107.95131 * 15.93394 * 20 14 13 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 30 30 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 31 31 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 32 32 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 33 33 H 1.08998 * 110.78036 * 23.76998 * 13 12 11 34 34 H 1.09001 * 110.77919 * 147.20342 * 13 12 11 35 35 H 1.08998 * 109.47303 * 300.13543 * 16 14 13 36 36 H 1.09007 * 109.46763 * 60.13538 * 16 14 13 37 37 H 0.96694 * 117.00192 * 179.97438 * 19 17 16 38 38 H 1.07999 * 119.96187 * 359.27919 * 21 20 14 39 39 H 1.07998 * 120.05916 * 179.97438 * 22 21 20 40 40 H 1.07995 * 119.87301 * 180.14400 * 23 22 21 41 41 H 1.07994 * 119.90589 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4350 -6.1036 0.0018 13 6 1.7453 -7.3907 -0.2336 14 6 1.4962 -7.9081 1.2018 15 1 1.5990 -8.9923 1.2475 16 6 0.1167 -7.4749 1.7020 17 6 -0.0947 -7.9907 3.1021 18 8 0.7696 -8.6380 3.6444 19 8 -1.2431 -7.7312 3.7467 20 6 2.5932 -7.2308 1.9990 21 6 3.1044 -7.4881 3.2537 22 6 4.1356 -6.7142 3.7542 23 6 4.6540 -5.6817 2.9938 24 6 4.1450 -5.4191 1.7393 25 6 3.1029 -6.1921 1.2294 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8906 31 1 0.8540 -5.0446 0.8914 32 1 0.8534 -5.0451 -0.8886 33 1 0.8023 -7.2340 -0.7573 34 1 2.3864 -8.0775 -0.7864 35 1 0.0556 -6.3867 1.7026 36 1 -0.6522 -7.8817 1.0450 37 1 -1.3328 -8.0833 4.6428 38 1 2.6990 -8.2949 3.8463 39 1 4.5354 -6.9157 4.7370 40 1 5.4608 -5.0790 3.3839 41 1 4.5544 -4.6117 1.1503 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148087291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:27 Heat of formation + Delta-G solvation = -64.188534 kcal Electronic energy + Delta-G solvation = -23180.790640 eV Core-core repulsion = 19832.162734 eV Total energy + Delta-G solvation = -3348.627906 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.31833 -40.01199 -36.88236 -36.38293 -34.71239 -33.20631 -31.28323 -30.20291 -29.30998 -27.70636 -25.51319 -23.07509 -22.92513 -22.08895 -21.16074 -20.59322 -19.70215 -18.37213 -16.91034 -16.88605 -16.58540 -15.97509 -15.72068 -15.16999 -14.99466 -14.33960 -13.77049 -13.64983 -13.60476 -13.44841 -13.00112 -12.77533 -12.60183 -12.31141 -12.14310 -11.82819 -11.66947 -11.56851 -11.48412 -11.18953 -10.82812 -10.75554 -10.63467 -10.39520 -10.11035 -9.83123 -9.75062 -9.19439 -8.63137 -8.51605 -8.30037 -7.78011 -6.34151 -4.02654 1.43564 1.58844 2.02239 2.82870 3.45022 3.48712 3.64400 3.73242 3.89122 4.38220 4.53325 4.56381 4.66507 5.00217 5.09744 5.12172 5.18436 5.26406 5.35704 5.43220 5.44498 5.55695 5.63866 5.68288 5.78995 5.87027 5.91247 6.11578 6.17664 6.38137 6.47142 6.53210 6.58752 6.70221 6.72618 6.88295 7.00169 7.15210 7.42148 7.44464 7.56171 7.72823 8.24772 8.49294 8.91191 9.69378 11.06612 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.004252 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.292969 B = 6583.328368 C = 7100.635506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 1.070 2.930 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.598 4.598 8 H 0.049 0.951 9 C 0.010 3.990 10 C -0.104 4.104 11 C 0.055 3.945 12 N -0.493 5.493 13 C 0.054 3.946 14 C -0.064 4.064 15 H 0.097 0.903 16 C -0.111 4.111 17 C 0.481 3.519 18 O -0.509 6.509 19 O -0.518 6.518 20 C -0.144 4.144 21 C -0.079 4.079 22 C -0.146 4.146 23 C -0.101 4.101 24 C -0.111 4.111 25 C 0.104 3.896 26 H 0.268 0.732 27 H 0.004 0.996 28 H 0.006 0.994 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.409 0.591 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 -18.855 5.223 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.899 3.101 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.636 4.636 8 H 0.067 0.933 9 C -0.027 4.027 10 C -0.142 4.142 11 C -0.069 4.069 12 N -0.210 5.210 13 C -0.073 4.073 14 C -0.084 4.084 15 H 0.115 0.885 16 C -0.148 4.148 17 C 0.324 3.676 18 O -0.398 6.398 19 O -0.329 6.329 20 C -0.147 4.147 21 C -0.097 4.097 22 C -0.165 4.165 23 C -0.120 4.120 24 C -0.131 4.131 25 C 0.008 3.992 26 H 0.078 0.922 27 H 0.022 0.978 28 H 0.025 0.975 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.267 0.733 38 H 0.154 0.846 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.162 -17.099 4.482 17.808 hybrid contribution -0.413 -2.017 1.260 2.414 sum 1.749 -19.116 5.742 20.036 Atomic orbital electron populations 1.70759 1.06892 1.30520 1.46996 1.25841 0.96558 1.02719 0.93833 0.83525 0.74712 0.75136 0.76729 1.21500 1.21454 1.21007 1.22058 0.94312 0.91933 1.55347 0.93304 1.19190 0.94602 0.93210 0.95728 1.21639 0.99130 0.91902 1.01524 1.22558 0.93193 0.90702 1.00455 1.60257 1.27059 1.04295 1.29392 1.23239 0.99151 0.90473 0.94453 1.21143 0.90761 1.01400 0.95095 0.88494 1.21597 0.98845 1.04279 0.90104 1.23444 0.78604 0.76634 0.88956 1.90615 1.43027 1.37673 1.68437 1.84559 1.40169 1.73985 1.34226 1.20748 0.98505 1.00090 0.95352 1.20820 0.95140 0.99516 0.94257 1.21065 0.98344 0.97027 1.00058 1.20968 0.99680 0.97365 0.93939 1.20652 0.96002 1.00207 0.96255 1.19554 0.95153 0.95557 0.88955 0.92175 0.97783 0.97529 0.92327 0.92564 0.94652 0.90511 0.89410 0.88879 0.87151 0.87039 0.73266 0.84639 0.86272 0.85841 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.27 13.65 55.43 0.76 -27.52 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 3 Si 1.07 25.65 29.90 -169.99 -5.08 20.57 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.60 -17.26 9.11 -34.44 -0.31 -17.57 16 8 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 9 C 0.01 0.26 4.28 -27.88 -0.12 0.14 16 10 C -0.10 -2.18 5.02 -26.73 -0.13 -2.32 16 11 C 0.06 0.93 4.59 -3.82 -0.02 0.92 16 12 N -0.49 -7.49 5.06 -169.01 -0.86 -8.34 16 13 C 0.05 0.62 6.56 -2.43 -0.02 0.60 16 14 C -0.06 -0.74 2.65 -90.50 -0.24 -0.98 16 15 H 0.10 1.03 8.04 -51.93 -0.42 0.61 16 16 C -0.11 -1.17 5.17 -27.88 -0.14 -1.31 16 17 C 0.48 5.40 8.10 36.00 0.29 5.69 16 18 O -0.51 -6.65 13.05 -18.76 -0.24 -6.90 16 19 O -0.52 -4.85 13.42 -39.25 -0.53 -5.38 16 20 C -0.14 -2.07 5.21 -104.04 -0.54 -2.61 16 21 C -0.08 -1.12 8.99 -39.68 -0.36 -1.48 16 22 C -0.15 -1.96 10.06 -39.53 -0.40 -2.35 16 23 C -0.10 -1.41 10.02 -39.67 -0.40 -1.80 16 24 C -0.11 -1.76 8.54 -39.27 -0.34 -2.10 16 25 C 0.10 1.64 5.28 -83.40 -0.44 1.20 16 26 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 27 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 28 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.20 5.58 -51.93 -0.29 0.91 16 31 H 0.04 0.60 5.73 -51.93 -0.30 0.30 16 32 H 0.08 1.22 7.85 -51.93 -0.41 0.81 16 33 H 0.09 0.84 7.38 -51.93 -0.38 0.46 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.11 1.34 5.71 -51.93 -0.30 1.04 16 36 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.41 2.09 9.10 45.56 0.41 2.50 16 38 H 0.14 1.90 5.68 -52.49 -0.30 1.60 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 41 H 0.13 2.07 7.18 -52.49 -0.38 1.69 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -34.01 329.23 -9.05 -43.06 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.79 Total: 3.21 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -3.26 Total: -23.66 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.10 Total: -35.86 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.77 Total: -12.27 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.01 -9.05 -43.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148087291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.129 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds