Wall clock time and date at job start Tue Mar 31 2020 06:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.47007 * 180.02562 * 11 10 9 13 13 C 1.47904 * 110.99802 * 189.84360 * 12 11 10 14 14 C 1.54601 * 102.62540 * 265.48532 * 13 12 11 15 15 H 1.08999 * 110.89229 * 216.06508 * 14 13 12 16 16 C 1.53001 * 110.73890 * 92.80360 * 14 13 12 17 17 C 1.50698 * 109.47003 * 180.13119 * 16 14 13 18 18 O 1.20833 * 119.99963 * 0.02562 * 17 16 14 19 19 O 1.34229 * 120.00184 * 180.02562 * 17 16 14 20 20 C 1.51579 * 102.83530 * 334.46950 * 14 13 12 21 21 C 1.37912 * 131.56163 * 196.34727 * 20 14 13 22 22 C 1.38305 * 120.08050 * 179.28266 * 21 20 14 23 23 C 1.38310 * 119.88519 * 359.97438 * 22 21 20 24 24 C 1.37910 * 120.26097 * 0.11984 * 23 22 21 25 25 C 1.38960 * 107.95131 * 15.93394 * 20 14 13 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 30 30 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 31 31 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 32 32 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 33 33 H 1.08998 * 110.78036 * 23.76998 * 13 12 11 34 34 H 1.09001 * 110.77919 * 147.20342 * 13 12 11 35 35 H 1.08998 * 109.47303 * 300.13543 * 16 14 13 36 36 H 1.09007 * 109.46763 * 60.13538 * 16 14 13 37 37 H 0.96694 * 117.00192 * 179.97438 * 19 17 16 38 38 H 1.07999 * 119.96187 * 359.27919 * 21 20 14 39 39 H 1.07998 * 120.05916 * 179.97438 * 22 21 20 40 40 H 1.07995 * 119.87301 * 180.14400 * 23 22 21 41 41 H 1.07994 * 119.90589 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4350 -6.1036 0.0018 13 6 1.7453 -7.3907 -0.2336 14 6 1.4962 -7.9081 1.2018 15 1 1.5990 -8.9923 1.2475 16 6 0.1167 -7.4749 1.7020 17 6 -0.0947 -7.9907 3.1021 18 8 0.7696 -8.6380 3.6444 19 8 -1.2431 -7.7312 3.7467 20 6 2.5932 -7.2308 1.9990 21 6 3.1044 -7.4881 3.2537 22 6 4.1356 -6.7142 3.7542 23 6 4.6540 -5.6817 2.9938 24 6 4.1450 -5.4191 1.7393 25 6 3.1029 -6.1921 1.2294 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8906 31 1 0.8540 -5.0446 0.8914 32 1 0.8534 -5.0451 -0.8886 33 1 0.8023 -7.2340 -0.7573 34 1 2.3864 -8.0775 -0.7864 35 1 0.0556 -6.3867 1.7026 36 1 -0.6522 -7.8817 1.0450 37 1 -1.3328 -8.0833 4.6428 38 1 2.6990 -8.2949 3.8463 39 1 4.5354 -6.9157 4.7370 40 1 5.4608 -5.0790 3.3839 41 1 4.5544 -4.6117 1.1503 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148087291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:26 Heat of formation + Delta-G solvation = -85.698224 kcal Electronic energy + Delta-G solvation = -23181.723370 eV Core-core repulsion = 19832.162734 eV Total energy + Delta-G solvation = -3349.560636 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.33149 -40.91015 -38.00532 -37.21449 -36.44125 -34.73638 -32.88796 -31.24701 -30.48722 -28.99848 -27.07929 -24.85526 -23.95262 -23.04781 -22.73036 -21.76424 -20.85419 -19.20704 -18.93086 -17.85475 -17.63803 -17.07611 -16.71697 -16.26006 -16.23325 -15.66741 -15.59149 -15.19751 -14.70605 -14.62158 -14.44268 -13.80870 -13.75787 -13.56274 -13.39050 -13.18742 -13.06703 -12.74230 -12.59150 -12.50299 -12.31591 -12.06531 -11.95887 -11.74077 -11.63970 -11.57971 -11.43684 -10.69621 -10.54166 -10.30029 -9.73612 -8.91207 -8.68922 -6.38810 0.34486 0.45576 1.18157 1.51667 1.60800 1.78912 2.09554 2.54969 2.63098 2.82445 3.15854 3.45620 3.66096 3.74300 3.97368 4.05531 4.14189 4.16889 4.21206 4.34927 4.43083 4.51582 4.56880 4.61666 4.65746 4.71111 4.78309 4.85264 4.89770 4.99204 5.05028 5.15633 5.40141 5.44719 5.51313 5.52082 5.58337 5.68508 5.85231 5.94913 6.04799 6.18971 6.31665 6.59315 6.99286 7.42283 8.72315 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.004252 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.292969 B = 6583.328368 C = 7100.635506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.038 4.038 3 Si 1.118 2.882 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.280 1.280 7 C -0.618 4.618 8 H 0.046 0.954 9 C 0.013 3.987 10 C -0.091 4.091 11 C 0.068 3.932 12 N -0.502 5.502 13 C 0.054 3.946 14 C -0.058 4.058 15 H 0.110 0.890 16 C -0.111 4.111 17 C 0.482 3.518 18 O -0.531 6.531 19 O -0.518 6.518 20 C -0.147 4.147 21 C -0.089 4.089 22 C -0.145 4.145 23 C -0.107 4.107 24 C -0.134 4.134 25 C 0.080 3.920 26 H 0.256 0.744 27 H -0.014 1.014 28 H -0.006 1.006 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.426 0.574 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.929 -19.819 5.480 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.235 4.235 3 Si 0.939 3.061 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.206 1.206 7 C -0.656 4.656 8 H 0.064 0.936 9 C -0.024 4.024 10 C -0.129 4.129 11 C -0.057 4.057 12 N -0.220 5.220 13 C -0.072 4.072 14 C -0.078 4.078 15 H 0.128 0.872 16 C -0.148 4.148 17 C 0.326 3.674 18 O -0.422 6.422 19 O -0.332 6.332 20 C -0.150 4.150 21 C -0.107 4.107 22 C -0.163 4.163 23 C -0.125 4.125 24 C -0.154 4.154 25 C -0.016 4.016 26 H 0.065 0.935 27 H 0.004 0.996 28 H 0.012 0.988 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.162 0.838 37 H 0.288 0.712 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.323 -18.099 4.754 18.857 hybrid contribution -0.475 -1.773 1.240 2.215 sum 1.848 -19.872 5.995 20.838 Atomic orbital electron populations 1.70891 1.07854 1.29876 1.48894 1.27398 0.96641 1.06739 0.92723 0.82927 0.74224 0.71142 0.77790 1.19862 1.19503 1.20570 1.22493 0.94537 0.93560 1.54970 0.93554 1.19106 0.94949 0.94259 0.94102 1.21399 0.98023 0.92742 1.00709 1.22287 0.92908 0.89468 1.01007 1.60191 1.27016 1.05289 1.29463 1.23417 1.00240 0.88684 0.94829 1.21153 0.90342 1.01822 0.94453 0.87197 1.21617 0.99262 1.03248 0.90643 1.23542 0.78605 0.76130 0.89163 1.90603 1.43768 1.38838 1.68960 1.84522 1.39272 1.73829 1.35578 1.21081 0.98904 0.99664 0.95338 1.21004 0.95450 0.99805 0.94415 1.21397 0.97755 0.96222 1.00933 1.21214 1.00157 0.97829 0.93341 1.20786 0.96949 1.00463 0.97223 1.19728 0.95701 0.96441 0.89710 0.93461 0.99575 0.98759 0.93144 0.93314 0.94766 0.89283 0.87161 0.87504 0.88820 0.83773 0.71207 0.84368 0.83762 0.83931 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.71 13.65 21.45 0.29 -58.42 16 2 C -0.04 -2.22 5.46 84.65 0.46 -1.76 16 3 Si 1.12 51.18 29.90 68.60 2.05 53.23 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.62 -36.19 9.11 25.60 0.23 -35.96 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.01 0.71 4.28 29.85 0.13 0.83 16 10 C -0.09 -3.88 5.02 30.59 0.15 -3.73 16 11 C 0.07 2.28 4.59 86.30 0.40 2.68 16 12 N -0.50 -14.81 5.06 -688.64 -3.48 -18.29 16 13 C 0.05 1.12 6.56 86.65 0.57 1.69 16 14 C -0.06 -1.22 2.65 -10.71 -0.03 -1.25 16 15 H 0.11 2.05 8.04 -2.39 -0.02 2.03 16 16 C -0.11 -2.09 5.17 29.85 0.15 -1.94 16 17 C 0.48 9.96 8.10 71.24 0.58 10.53 16 18 O -0.53 -13.06 13.05 21.94 0.29 -12.77 16 19 O -0.52 -8.75 13.42 -51.41 -0.69 -9.44 16 20 C -0.15 -4.06 5.21 -19.49 -0.10 -4.16 16 21 C -0.09 -2.41 8.99 22.21 0.20 -2.21 16 22 C -0.14 -3.68 10.06 22.30 0.22 -3.46 16 23 C -0.11 -2.92 10.02 22.21 0.22 -2.70 16 24 C -0.13 -4.31 8.54 22.47 0.19 -4.12 16 25 C 0.08 2.50 5.28 38.29 0.20 2.70 16 26 H 0.26 16.14 7.22 -92.71 -0.67 15.47 16 27 H -0.01 -0.79 8.01 -2.39 -0.02 -0.80 16 28 H -0.01 -0.32 8.01 -2.38 -0.02 -0.34 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 2.14 5.58 -2.39 -0.01 2.12 16 31 H 0.03 1.15 5.73 -2.39 -0.01 1.14 16 32 H 0.09 2.73 7.85 -2.39 -0.02 2.71 16 33 H 0.11 1.76 7.38 -2.39 -0.02 1.75 16 34 H 0.11 1.92 8.14 -2.39 -0.02 1.91 16 35 H 0.09 2.16 5.71 -2.39 -0.01 2.14 16 36 H 0.14 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.43 3.57 9.10 -74.06 -0.67 2.90 16 38 H 0.14 3.69 5.68 -2.91 -0.02 3.67 16 39 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 40 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.11 3.83 7.18 -2.91 -0.02 3.81 16 Total: -1.00 -73.71 329.23 2.52 -71.19 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.48 Total: 17.35 kcal Atomic # 6 Polarization: -46.43 SS G_CDS: 3.58 Total: -42.84 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -3.19 Total: -76.72 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.40 Total: -22.21 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Total: -73.71 2.52 -71.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148087291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.507 kcal (2) G-P(sol) polarization free energy of solvation -73.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds