Wall clock time and date at job start Tue Mar 31 2020 06:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47256 * 2 1 4 4 N 1.46501 * 109.47150 * 239.99474 * 2 1 3 5 5 C 1.39988 * 119.99747 * 85.00403 * 4 2 1 6 6 C 1.40432 * 125.97374 * 0.02562 * 5 4 2 7 7 C 1.35251 * 107.86019 * 179.73886 * 6 5 4 8 8 N 1.34962 * 107.86128 * 0.42675 * 7 6 5 9 9 C 1.46500 * 125.97410 * 179.83595 * 8 7 6 10 10 C 1.50706 * 109.47299 * 124.71196 * 9 8 7 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46758 * 269.72576 * 14 12 10 16 16 H 1.48499 * 109.47026 * 29.72423 * 14 12 10 17 17 H 1.48496 * 109.47474 * 149.72459 * 14 12 10 18 18 N 1.31219 * 125.97677 * 180.02562 * 5 4 2 19 19 C 1.50698 * 109.46837 * 119.99842 * 2 1 3 20 20 C 1.38249 * 119.97453 * 79.72441 * 19 2 1 21 21 C 1.38193 * 120.02282 * 179.72501 * 20 19 2 22 22 C 1.38460 * 119.97649 * 0.52626 * 21 20 19 23 23 F 1.35099 * 120.02711 * 179.72495 * 22 21 20 24 24 C 1.38454 * 119.94674 * 359.74953 * 22 21 20 25 25 C 1.38193 * 119.97929 * 359.97438 * 24 22 21 26 26 H 1.09007 * 109.47066 * 60.00377 * 1 2 3 27 27 H 1.09002 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47220 * 300.00474 * 1 2 3 29 29 H 0.96999 * 120.00325 * 265.00515 * 4 2 1 30 30 H 1.07998 * 126.07497 * 0.02562 * 6 5 4 31 31 H 1.08000 * 126.07179 * 180.26370 * 7 6 5 32 32 H 1.09004 * 109.47078 * 4.71958 * 9 8 7 33 33 H 1.08993 * 109.47364 * 244.71729 * 9 8 7 34 34 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 35 35 H 1.08000 * 119.98709 * 359.97438 * 20 19 2 36 36 H 1.08008 * 120.01404 * 180.29643 * 21 20 19 37 37 H 1.08007 * 120.00976 * 179.97438 * 24 22 21 38 38 H 1.07990 * 119.99439 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1521 0.0076 -2.4020 6 6 1.8567 1.3652 -2.6062 7 6 2.1235 1.6578 -3.8995 8 7 2.5618 0.5299 -4.4971 9 6 2.9597 0.3987 -5.9010 10 6 4.3598 -0.1538 -5.9767 11 1 4.8990 -0.3844 -5.0699 12 6 4.9523 -0.3647 -7.2036 13 7 4.2936 -0.0888 -8.3080 14 14 6.6874 -1.0501 -7.2976 15 1 7.6624 0.0700 -7.3040 16 1 6.9404 -1.9199 -6.1209 17 1 6.8389 -1.8453 -8.5425 18 7 2.5755 -0.4919 -3.5391 19 6 2.0323 -0.7104 1.2305 20 6 2.0611 -2.0921 1.2670 21 6 2.5268 -2.7445 2.3927 22 6 2.9544 -2.0140 3.4884 23 9 3.4047 -2.6508 4.5915 24 6 2.9198 -0.6303 3.4528 25 6 2.4590 0.0201 2.3239 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.2490 -1.6319 -1.1525 30 1 1.4869 2.0546 -1.8616 31 1 2.0043 2.6221 -4.3709 32 1 2.9289 1.3772 -6.3803 33 1 2.2741 -0.2777 -6.4113 34 1 3.3925 0.2669 -8.2594 35 1 1.7233 -2.6617 0.4139 36 1 2.5537 -3.8239 2.4192 37 1 3.2527 -0.0595 4.3071 38 1 2.4323 1.0993 2.2958 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152779650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:31 Heat of formation + Delta-G solvation = 55.711787 kcal Electronic energy + Delta-G solvation = -21486.762646 eV Core-core repulsion = 18052.166454 eV Total energy + Delta-G solvation = -3434.596192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.13173 -40.37799 -39.60224 -36.23265 -33.88031 -32.06950 -31.44952 -30.01298 -29.43585 -28.58036 -26.06363 -23.91085 -23.44800 -22.79058 -21.35447 -20.23323 -19.43285 -17.99538 -17.17621 -16.87999 -16.40963 -15.98156 -15.82645 -15.04593 -14.58969 -14.37057 -14.07554 -13.84010 -13.77653 -13.76507 -13.32653 -13.11256 -12.90097 -12.37700 -12.25752 -12.14741 -11.90098 -11.60656 -11.34338 -11.12972 -11.04789 -10.74414 -10.15993 -9.95162 -9.67228 -9.39660 -8.89105 -8.82402 -8.54468 -7.99410 -7.09454 -6.54224 -4.28141 0.83268 0.94373 2.82248 3.09445 3.34211 3.38362 3.43152 3.59971 3.68411 3.98632 4.10992 4.38962 4.43592 4.44831 4.60651 4.95922 5.01974 5.18006 5.20140 5.26448 5.41364 5.54993 5.58787 5.69712 5.76334 5.82839 5.88699 5.94854 6.11230 6.15659 6.26955 6.46541 6.55812 6.59041 6.75304 7.00056 7.57911 7.73485 7.92311 8.12113 8.40806 8.63161 8.81606 9.40113 10.82771 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.003165 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.886592 B = 8845.375266 C = 9828.788319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.210 3.790 3 H 0.087 0.913 4 N -0.722 5.722 5 C 0.309 3.691 6 C -0.330 4.330 7 C 0.066 3.934 8 N -0.326 5.326 9 C 0.251 3.749 10 C -0.604 4.604 11 H 0.063 0.937 12 C 0.021 3.979 13 N -0.908 5.908 14 Si 1.079 2.921 15 H -0.286 1.286 16 H -0.287 1.287 17 H -0.282 1.282 18 N -0.330 5.330 19 C -0.094 4.094 20 C -0.081 4.081 21 C -0.150 4.150 22 C 0.093 3.907 23 F -0.142 7.142 24 C -0.151 4.151 25 C -0.080 4.080 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.397 0.603 30 H 0.131 0.869 31 H 0.162 0.838 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.047 1.075 21.676 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.104 3.896 3 H 0.104 0.896 4 N -0.365 5.365 5 C 0.052 3.948 6 C -0.364 4.364 7 C -0.086 4.086 8 N -0.105 5.105 9 C 0.132 3.868 10 C -0.643 4.643 11 H 0.082 0.918 12 C -0.183 4.183 13 N -0.543 5.543 14 Si 0.906 3.094 15 H -0.213 1.213 16 H -0.212 1.212 17 H -0.207 1.207 18 N -0.162 5.162 19 C -0.094 4.094 20 C -0.100 4.100 21 C -0.168 4.168 22 C 0.074 3.926 23 F -0.121 7.121 24 C -0.170 4.170 25 C -0.099 4.099 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.233 0.767 30 H 0.149 0.851 31 H 0.179 0.821 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.431 -0.299 19.929 20.658 hybrid contribution -1.338 0.791 1.705 2.307 sum -6.769 0.492 21.635 22.674 Atomic orbital electron populations 1.22317 0.95113 1.02541 1.02276 1.19482 0.93348 0.95821 0.80952 0.89554 1.43478 1.76773 1.11603 1.04693 1.19160 0.97506 0.90838 0.87266 1.20726 1.23012 0.95476 0.97151 1.22337 0.99556 0.93007 0.93688 1.48708 1.46965 1.04785 1.10008 1.19673 0.97429 0.98008 0.71649 1.22145 0.98632 1.47470 0.96027 0.91824 1.25913 1.05790 0.95143 0.91431 1.70822 1.13319 1.40981 1.29210 0.83394 0.73650 0.76576 0.75789 1.21251 1.21244 1.20743 1.77459 1.29407 1.12962 0.96349 1.20110 0.99505 0.93938 0.95892 1.20856 0.97728 0.93946 0.97422 1.21148 1.01828 1.00890 0.92980 1.17745 1.00091 0.90807 0.83985 1.91497 1.86882 1.82294 1.51401 1.21122 1.03177 0.92532 1.00198 1.20878 0.96800 1.00370 0.91816 0.91392 0.92361 0.92028 0.76727 0.85072 0.82056 0.93975 0.95017 0.92292 0.84857 0.84634 0.84650 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.48 37.16 0.35 -1.24 16 2 C 0.21 2.30 2.77 -69.08 -0.19 2.11 16 3 H 0.09 0.94 7.00 -51.93 -0.36 0.57 16 4 N -0.72 -10.56 5.23 -54.70 -0.29 -10.84 16 5 C 0.31 5.85 8.14 -154.55 -1.26 4.60 16 6 C -0.33 -5.75 9.92 -39.82 -0.40 -6.15 16 7 C 0.07 1.25 11.44 -17.24 -0.20 1.05 16 8 N -0.33 -7.58 3.67 -62.56 -0.23 -7.80 16 9 C 0.25 6.41 5.57 -5.19 -0.03 6.38 16 10 C -0.60 -17.25 9.24 -34.44 -0.32 -17.57 16 11 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 12 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 13 N -0.91 -26.69 13.65 55.43 0.76 -25.93 16 14 Si 1.08 25.32 29.90 -169.99 -5.08 20.23 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 N -0.33 -7.70 12.42 31.41 0.39 -7.31 16 19 C -0.09 -0.92 4.95 -104.61 -0.52 -1.44 16 20 C -0.08 -0.78 9.05 -39.59 -0.36 -1.14 16 21 C -0.15 -1.42 10.03 -39.52 -0.40 -1.81 16 22 C 0.09 0.93 7.30 -39.42 -0.29 0.64 16 23 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 24 C -0.15 -1.34 10.03 -39.52 -0.40 -1.73 16 25 C -0.08 -0.70 9.67 -39.59 -0.38 -1.08 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.40 5.60 7.01 -40.82 -0.29 5.31 16 30 H 0.13 1.85 7.45 -52.49 -0.39 1.46 16 31 H 0.16 2.49 8.06 -52.49 -0.42 2.06 16 32 H 0.04 1.04 7.94 -51.93 -0.41 0.63 16 33 H 0.03 0.85 8.00 -51.93 -0.42 0.43 16 34 H 0.27 7.67 7.22 -40.82 -0.29 7.37 16 35 H 0.13 1.18 6.93 -52.49 -0.36 0.81 16 36 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.14 0.89 8.03 -52.49 -0.42 0.47 16 LS Contribution 332.50 15.07 5.01 5.01 Total: -1.00 -32.43 332.50 -8.57 -41.00 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.69 Total: 4.00 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -4.47 Total: -16.86 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.63 Total: -51.89 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.43 -8.57 -41.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152779650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.711 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds