Wall clock time and date at job start Tue Mar 31 2020 06:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47539 * 2 1 4 4 N 1.46501 * 109.47121 * 120.00020 * 2 1 3 5 5 C 1.39994 * 119.99823 * 274.99812 * 4 2 1 6 6 C 1.40431 * 125.97687 * 0.02562 * 5 4 2 7 7 C 1.35240 * 107.86471 * 180.02562 * 6 5 4 8 8 N 1.34959 * 107.86278 * 359.97438 * 7 6 5 9 9 C 1.46500 * 125.97494 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47299 * 124.99548 * 9 8 7 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 N 1.31222 * 125.97402 * 180.36594 * 5 4 2 19 19 C 1.50703 * 109.46967 * 239.99331 * 2 1 3 20 20 C 1.38242 * 119.97797 * 279.72370 * 19 2 1 21 21 C 1.38193 * 120.02431 * 179.76632 * 20 19 2 22 22 C 1.38457 * 119.97500 * 0.51476 * 21 20 19 23 23 F 1.35102 * 120.02756 * 179.76864 * 22 21 20 24 24 C 1.38461 * 119.94858 * 359.74237 * 22 21 20 25 25 C 1.38200 * 119.97662 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47435 * 60.00258 * 1 2 3 27 27 H 1.09003 * 109.47471 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47003 * 300.00008 * 1 2 3 29 29 H 0.97002 * 120.00496 * 94.99684 * 4 2 1 30 30 H 1.08002 * 126.06596 * 0.06137 * 6 5 4 31 31 H 1.08002 * 126.07271 * 179.97438 * 7 6 5 32 32 H 1.09004 * 109.47078 * 5.00309 * 9 8 7 33 33 H 1.08993 * 109.47364 * 245.00081 * 9 8 7 34 34 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 35 35 H 1.07998 * 119.98656 * 0.02562 * 20 19 2 36 36 H 1.07997 * 120.01642 * 180.25731 * 21 20 19 37 37 H 1.08007 * 120.01179 * 179.97438 * 24 22 21 38 38 H 1.07990 * 119.98987 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1520 0.0078 2.4021 6 6 1.8556 1.3652 2.6065 7 6 2.1178 1.6567 3.9008 8 7 2.5626 0.5305 4.4969 9 6 2.9622 0.3999 5.9003 10 6 2.1768 -0.7132 6.5448 11 1 1.4527 -1.2680 5.9667 12 6 2.3826 -1.0232 7.8724 13 7 3.2682 -0.3510 8.5749 14 14 1.4095 -2.4033 8.6710 15 1 1.8189 -2.5397 10.0920 16 1 -0.0407 -2.0911 8.6014 17 1 1.6768 -3.6763 7.9546 18 7 2.5822 -0.4899 3.5375 19 6 2.0323 -0.7106 -1.2304 20 6 2.0718 -2.0921 -1.2625 21 6 2.5277 -2.7447 -2.3921 22 6 2.9550 -2.0143 -3.4880 23 9 3.4053 -2.6512 -4.5911 24 6 2.9199 -0.6306 -3.4527 25 6 2.4591 0.0199 -2.3238 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.2490 -1.6318 1.1527 30 1 1.4837 2.0539 1.8623 31 1 1.9933 2.6197 4.3736 32 1 2.7629 1.3352 6.4234 33 1 4.0268 0.1725 5.9553 34 1 3.7737 0.3655 8.1602 35 1 1.7424 -2.6615 -0.4060 36 1 2.5546 -3.8240 -2.4185 37 1 3.2534 -0.0598 -4.3068 38 1 2.4313 1.0991 -2.2962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152779760.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:34 Heat of formation + Delta-G solvation = 55.834346 kcal Electronic energy + Delta-G solvation = -21467.530903 eV Core-core repulsion = 18032.940026 eV Total energy + Delta-G solvation = -3434.590877 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.14385 -40.38018 -39.61098 -36.23407 -33.88171 -32.07131 -31.46046 -30.01519 -29.43899 -28.57597 -26.06624 -23.90945 -23.45706 -22.79328 -21.35693 -20.23593 -19.43459 -18.00644 -17.18347 -16.87962 -16.41502 -15.97110 -15.83540 -15.04217 -14.77061 -14.15882 -14.10013 -13.87861 -13.79088 -13.71044 -13.29098 -13.26551 -12.79099 -12.42415 -12.36331 -12.06177 -11.81153 -11.65885 -11.35403 -11.10200 -11.08419 -10.76118 -10.14972 -9.93476 -9.68126 -9.40848 -8.89842 -8.83261 -8.54973 -7.99573 -7.09566 -6.54356 -4.28340 0.82107 0.93132 2.82300 3.08860 3.33282 3.39002 3.41470 3.60175 3.68323 3.97397 4.10644 4.38496 4.43476 4.44071 4.59543 4.95034 5.01028 5.17877 5.20154 5.27239 5.41512 5.55907 5.58041 5.69545 5.77323 5.81665 5.88712 5.94328 6.12854 6.16239 6.27090 6.46494 6.55709 6.57900 6.75375 6.99922 7.57743 7.73333 7.92064 8.11877 8.39904 8.62655 8.81371 9.39892 10.82547 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.002930 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.651139 B = 9553.526562 C =10051.726783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.211 3.789 3 H 0.086 0.914 4 N -0.723 5.723 5 C 0.309 3.691 6 C -0.330 4.330 7 C 0.066 3.934 8 N -0.326 5.326 9 C 0.251 3.749 10 C -0.605 4.605 11 H 0.063 0.937 12 C 0.022 3.978 13 N -0.907 5.907 14 Si 1.076 2.924 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.285 1.285 18 N -0.330 5.330 19 C -0.093 4.093 20 C -0.081 4.081 21 C -0.150 4.150 22 C 0.093 3.907 23 F -0.142 7.142 24 C -0.152 4.152 25 C -0.080 4.080 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.397 0.603 30 H 0.131 0.869 31 H 0.162 0.838 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 1.974 -22.551 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.104 3.896 3 H 0.104 0.896 4 N -0.366 5.366 5 C 0.052 3.948 6 C -0.364 4.364 7 C -0.086 4.086 8 N -0.105 5.105 9 C 0.133 3.867 10 C -0.643 4.643 11 H 0.081 0.919 12 C -0.183 4.183 13 N -0.542 5.542 14 Si 0.904 3.096 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.212 1.212 18 N -0.162 5.162 19 C -0.094 4.094 20 C -0.099 4.099 21 C -0.168 4.168 22 C 0.073 3.927 23 F -0.121 7.121 24 C -0.171 4.171 25 C -0.099 4.099 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.233 0.767 30 H 0.149 0.851 31 H 0.179 0.821 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.297 0.250 -20.438 20.704 hybrid contribution 0.110 1.148 -2.111 2.406 sum -3.187 1.398 -22.549 22.816 Atomic orbital electron populations 1.22318 0.95059 1.02622 1.02311 1.19484 0.93423 0.95747 0.80920 0.89575 1.43485 1.76757 1.11581 1.04748 1.19160 0.97725 0.90746 0.87125 1.20724 1.22920 0.95552 0.97170 1.22334 0.99718 0.93064 0.93466 1.48704 1.47421 1.04618 1.09716 1.19668 0.96574 0.99015 0.71478 1.22109 1.25183 1.18880 0.98125 0.91876 1.25915 0.97222 1.01209 0.93929 1.70850 1.22640 1.21358 1.39393 0.83426 0.75268 0.74897 0.76060 1.20564 1.21272 1.21155 1.77460 1.29976 1.12675 0.96097 1.20118 0.99439 0.93943 0.95935 1.20863 0.97700 0.93961 0.97422 1.21149 1.01880 1.00899 0.92908 1.17749 1.00105 0.90805 0.83992 1.91498 1.86866 1.82294 1.51424 1.21123 1.03225 0.92528 1.00177 1.20876 0.96814 1.00354 0.91842 0.92042 0.92320 0.91316 0.76725 0.85069 0.82055 0.93965 0.95044 0.92317 0.84821 0.84627 0.84663 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.48 37.16 0.35 -1.31 16 2 C 0.21 2.31 2.77 -69.08 -0.19 2.11 16 3 H 0.09 0.92 7.00 -51.93 -0.36 0.55 16 4 N -0.72 -10.55 5.23 -54.70 -0.29 -10.83 16 5 C 0.31 5.85 8.14 -154.54 -1.26 4.59 16 6 C -0.33 -5.75 9.92 -39.82 -0.40 -6.15 16 7 C 0.07 1.25 11.43 -17.24 -0.20 1.05 16 8 N -0.33 -7.57 3.66 -62.56 -0.23 -7.80 16 9 C 0.25 6.42 5.57 -5.19 -0.03 6.39 16 10 C -0.60 -17.22 9.24 -34.44 -0.32 -17.53 16 11 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 12 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 13 N -0.91 -26.65 13.65 55.43 0.76 -25.90 16 14 Si 1.08 25.16 29.90 -169.99 -5.08 20.07 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 18 N -0.33 -7.70 12.43 31.41 0.39 -7.31 16 19 C -0.09 -0.91 4.96 -104.61 -0.52 -1.43 16 20 C -0.08 -0.78 9.06 -39.60 -0.36 -1.14 16 21 C -0.15 -1.40 10.03 -39.52 -0.40 -1.80 16 22 C 0.09 0.91 7.30 -39.42 -0.29 0.63 16 23 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 24 C -0.15 -1.31 10.03 -39.51 -0.40 -1.70 16 25 C -0.08 -0.68 9.67 -39.59 -0.38 -1.06 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.40 5.59 6.98 -40.82 -0.28 5.30 16 30 H 0.13 1.85 7.45 -52.49 -0.39 1.46 16 31 H 0.16 2.49 8.06 -52.49 -0.42 2.06 16 32 H 0.04 1.04 7.94 -51.93 -0.41 0.63 16 33 H 0.03 0.85 8.00 -51.93 -0.42 0.43 16 34 H 0.27 7.66 7.22 -40.82 -0.29 7.37 16 35 H 0.13 1.19 6.90 -52.49 -0.36 0.83 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.14 0.86 8.03 -52.49 -0.42 0.43 16 LS Contribution 332.47 15.07 5.01 5.01 Total: -1.00 -32.36 332.47 -8.57 -40.93 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.69 Total: 4.12 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -4.47 Total: -16.82 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.63 Total: -51.84 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.36 -8.57 -40.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152779760.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.762 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds