Wall clock time and date at job start Tue Mar 31 2020 06:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47539 * 2 1 4 4 N 1.46501 * 109.47121 * 120.00020 * 2 1 3 5 5 C 1.39994 * 119.99823 * 274.99812 * 4 2 1 6 6 C 1.40431 * 125.97687 * 0.02562 * 5 4 2 7 7 C 1.35240 * 107.86471 * 180.02562 * 6 5 4 8 8 N 1.34959 * 107.86278 * 359.97438 * 7 6 5 9 9 C 1.46500 * 125.97494 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47299 * 124.99548 * 9 8 7 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 N 1.31222 * 125.97402 * 180.36594 * 5 4 2 19 19 C 1.50703 * 109.46967 * 239.99331 * 2 1 3 20 20 C 1.38242 * 119.97797 * 279.72370 * 19 2 1 21 21 C 1.38193 * 120.02431 * 179.76632 * 20 19 2 22 22 C 1.38457 * 119.97500 * 0.51476 * 21 20 19 23 23 F 1.35102 * 120.02756 * 179.76864 * 22 21 20 24 24 C 1.38461 * 119.94858 * 359.74237 * 22 21 20 25 25 C 1.38200 * 119.97662 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47435 * 60.00258 * 1 2 3 27 27 H 1.09003 * 109.47471 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47003 * 300.00008 * 1 2 3 29 29 H 0.97002 * 120.00496 * 94.99684 * 4 2 1 30 30 H 1.08002 * 126.06596 * 0.06137 * 6 5 4 31 31 H 1.08002 * 126.07271 * 179.97438 * 7 6 5 32 32 H 1.09004 * 109.47078 * 5.00309 * 9 8 7 33 33 H 1.08993 * 109.47364 * 245.00081 * 9 8 7 34 34 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 35 35 H 1.07998 * 119.98656 * 0.02562 * 20 19 2 36 36 H 1.07997 * 120.01642 * 180.25731 * 21 20 19 37 37 H 1.08007 * 120.01179 * 179.97438 * 24 22 21 38 38 H 1.07990 * 119.98987 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1520 0.0078 2.4021 6 6 1.8556 1.3652 2.6065 7 6 2.1178 1.6567 3.9008 8 7 2.5626 0.5305 4.4969 9 6 2.9622 0.3999 5.9003 10 6 2.1768 -0.7132 6.5448 11 1 1.4527 -1.2680 5.9667 12 6 2.3826 -1.0232 7.8724 13 7 3.2682 -0.3510 8.5749 14 14 1.4095 -2.4033 8.6710 15 1 1.8189 -2.5397 10.0920 16 1 -0.0407 -2.0911 8.6014 17 1 1.6768 -3.6763 7.9546 18 7 2.5822 -0.4899 3.5375 19 6 2.0323 -0.7106 -1.2304 20 6 2.0718 -2.0921 -1.2625 21 6 2.5277 -2.7447 -2.3921 22 6 2.9550 -2.0143 -3.4880 23 9 3.4053 -2.6512 -4.5911 24 6 2.9199 -0.6306 -3.4527 25 6 2.4591 0.0199 -2.3238 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.2490 -1.6318 1.1527 30 1 1.4837 2.0539 1.8623 31 1 1.9933 2.6197 4.3736 32 1 2.7629 1.3352 6.4234 33 1 4.0268 0.1725 5.9553 34 1 3.7737 0.3655 8.1602 35 1 1.7424 -2.6615 -0.4060 36 1 2.5546 -3.8240 -2.4185 37 1 3.2534 -0.0598 -4.3068 38 1 2.4313 1.0991 -2.2962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152779760.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:33 Heat of formation + Delta-G solvation = 37.839959 kcal Electronic energy + Delta-G solvation = -21468.311198 eV Core-core repulsion = 18032.940026 eV Total energy + Delta-G solvation = -3435.371172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.91298 -41.85088 -40.41810 -37.31991 -35.84504 -33.49065 -32.18513 -31.46957 -30.70785 -29.58096 -27.90972 -25.11574 -24.61600 -23.96033 -22.42309 -21.66047 -20.72819 -19.19926 -18.75839 -18.10771 -17.30897 -17.18726 -16.61099 -16.28497 -15.91587 -15.73695 -15.45783 -15.12765 -14.90708 -14.71725 -14.47766 -14.14766 -13.97459 -13.74993 -13.61497 -13.46047 -13.14736 -13.05959 -12.62785 -12.58124 -12.07375 -11.95650 -11.89221 -11.46521 -11.22081 -10.80140 -10.67080 -10.08498 -9.61406 -9.52391 -8.84695 -8.47062 -6.53973 0.08409 0.25555 1.29387 1.50251 1.57069 1.69096 1.79236 2.24826 2.48043 2.54901 2.80600 3.02158 3.26634 3.59060 3.75001 3.94938 3.99275 4.21595 4.26283 4.30529 4.42317 4.49714 4.63272 4.74587 4.84782 4.88838 4.92543 4.94383 5.02595 5.07867 5.14386 5.23074 5.34401 5.46119 5.56424 5.68211 5.88731 5.94891 6.31489 6.39736 6.52630 6.75569 7.21432 7.34403 8.59269 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.002930 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.651139 B = 9553.526562 C =10051.726783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.210 3.790 3 H 0.097 0.903 4 N -0.716 5.716 5 C 0.314 3.686 6 C -0.317 4.317 7 C 0.060 3.940 8 N -0.358 5.358 9 C 0.263 3.737 10 C -0.618 4.618 11 H 0.043 0.957 12 C -0.021 4.021 13 N -0.925 5.925 14 Si 1.120 2.880 15 H -0.274 1.274 16 H -0.269 1.269 17 H -0.278 1.278 18 N -0.394 5.394 19 C -0.100 4.100 20 C -0.090 4.090 21 C -0.156 4.156 22 C 0.076 3.924 23 F -0.150 7.150 24 C -0.150 4.150 25 C -0.076 4.076 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.397 0.603 30 H 0.171 0.829 31 H 0.195 0.805 32 H 0.050 0.950 33 H 0.007 0.993 34 H 0.260 0.740 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.156 0.844 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 2.951 -24.308 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.106 3.894 3 H 0.115 0.885 4 N -0.359 5.359 5 C 0.057 3.943 6 C -0.350 4.350 7 C -0.089 4.089 8 N -0.139 5.139 9 C 0.143 3.857 10 C -0.656 4.656 11 H 0.061 0.939 12 C -0.221 4.221 13 N -0.562 5.562 14 Si 0.941 3.059 15 H -0.199 1.199 16 H -0.195 1.195 17 H -0.203 1.203 18 N -0.226 5.226 19 C -0.101 4.101 20 C -0.109 4.109 21 C -0.175 4.175 22 C 0.057 3.943 23 F -0.129 7.129 24 C -0.169 4.169 25 C -0.094 4.094 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.233 0.767 30 H 0.188 0.812 31 H 0.211 0.789 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.404 1.258 -22.260 22.726 hybrid contribution 0.449 0.873 -1.763 2.018 sum -3.954 2.131 -24.024 24.440 Atomic orbital electron populations 1.22266 0.94213 1.02489 1.02824 1.19694 0.93959 0.96015 0.79763 0.88465 1.43812 1.75926 1.11725 1.04404 1.19567 0.95741 0.91714 0.87287 1.21144 1.21314 0.95279 0.97240 1.23053 0.98449 0.93220 0.94139 1.48407 1.50332 1.06110 1.09002 1.19243 0.94726 0.98261 0.73475 1.22304 1.25138 1.19737 0.98447 0.93896 1.27290 0.97378 1.02711 0.94673 1.70946 1.23583 1.21984 1.39644 0.82886 0.74965 0.72596 0.75502 1.19914 1.19453 1.20325 1.77342 1.33206 1.14328 0.97744 1.20074 1.00218 0.93929 0.95899 1.20938 0.98066 0.94282 0.97580 1.21283 1.01804 1.01580 0.92813 1.18012 1.00706 0.91599 0.83947 1.91478 1.87049 1.82546 1.51776 1.21389 1.02471 0.92090 1.00934 1.21146 0.95633 1.01635 0.91015 0.89480 0.92869 0.92732 0.76736 0.81151 0.78854 0.93268 0.97512 0.93057 0.84804 0.83729 0.82609 0.82057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.48 71.98 0.68 -2.12 16 2 C 0.21 4.05 2.77 44.24 0.12 4.18 16 3 H 0.10 1.69 7.00 -2.39 -0.02 1.68 16 4 N -0.72 -19.99 5.23 -326.96 -1.71 -21.70 16 5 C 0.31 11.64 8.14 133.39 1.09 12.73 16 6 C -0.32 -10.29 9.92 22.11 0.22 -10.07 16 7 C 0.06 2.21 11.43 83.52 0.96 3.16 16 8 N -0.36 -16.89 3.66 -351.84 -1.29 -18.18 16 9 C 0.26 13.87 5.57 85.64 0.48 14.35 16 10 C -0.62 -36.09 9.24 25.60 0.24 -35.85 16 11 H 0.04 2.63 7.81 -2.91 -0.02 2.60 16 12 C -0.02 -1.22 5.46 84.65 0.46 -0.76 16 13 N -0.93 -55.15 13.65 21.45 0.29 -54.85 16 14 Si 1.12 50.67 29.90 68.60 2.05 52.72 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 18 N -0.39 -18.65 12.43 -54.54 -0.68 -19.33 16 19 C -0.10 -1.72 4.96 -19.86 -0.10 -1.82 16 20 C -0.09 -1.62 9.06 22.26 0.20 -1.42 16 21 C -0.16 -2.76 10.03 22.31 0.22 -2.53 16 22 C 0.08 1.39 7.30 22.38 0.16 1.56 16 23 F -0.15 -3.02 17.27 44.97 0.78 -2.24 16 24 C -0.15 -2.19 10.03 22.31 0.22 -1.97 16 25 C -0.08 -1.05 9.67 22.26 0.22 -0.83 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.40 11.01 6.98 -92.71 -0.65 10.36 16 30 H 0.17 4.07 7.45 -2.91 -0.02 4.05 16 31 H 0.19 5.52 8.06 -2.91 -0.02 5.50 16 32 H 0.05 2.48 7.94 -2.39 -0.02 2.46 16 33 H 0.01 0.40 8.00 -2.39 -0.02 0.38 16 34 H 0.26 15.34 7.22 -92.71 -0.67 14.67 16 35 H 0.13 2.32 6.90 -2.91 -0.02 2.30 16 36 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.16 1.33 8.03 -2.92 -0.02 1.31 16 Total: -1.00 -71.39 332.47 5.15 -66.24 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.53 Total: 18.74 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 5.17 Total: -21.40 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -3.39 Total: -114.06 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.72 kcal Total: -71.39 5.15 -66.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152779760.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.083 kcal (2) G-P(sol) polarization free energy of solvation -71.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds