Wall clock time and date at job start Tue Mar 31 2020 05:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47128 * 2 1 4 4 H 1.09002 * 109.46848 * 305.00299 * 3 2 1 5 5 C 1.50693 * 109.47307 * 185.00263 * 3 2 1 6 6 H 1.08008 * 119.99889 * 240.00345 * 5 3 2 7 7 C 1.37870 * 120.00354 * 59.99697 * 5 3 2 8 8 N 1.31519 * 120.00022 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00389 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47118 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47303 * 120.00067 * 9 7 5 12 12 H 1.48497 * 109.47142 * 239.99972 * 9 7 5 13 13 N 1.46507 * 109.47063 * 65.00015 * 3 2 1 14 14 C 1.34782 * 119.99934 * 275.00059 * 13 3 2 15 15 O 1.21593 * 119.99524 * 0.02562 * 14 13 3 16 16 N 1.34769 * 119.99855 * 180.02562 * 14 13 3 17 17 C 1.39406 * 120.00194 * 179.97438 * 16 14 13 18 18 N 1.31311 * 126.32005 * 359.97438 * 17 16 14 19 19 N 1.28657 * 110.28987 * 180.02562 * 18 17 16 20 20 C 1.32083 * 109.65158 * 0.02562 * 19 18 17 21 21 C 1.40920 * 133.50309 * 179.97438 * 20 19 18 22 22 C 1.35946 * 119.24247 * 180.27861 * 21 20 19 23 23 C 1.40689 * 119.83131 * 359.39986 * 22 21 20 24 24 C 1.34850 * 120.42301 * 0.64724 * 23 22 21 25 25 N 1.36296 * 126.32651 * 179.97438 * 17 16 14 26 26 H 1.08999 * 109.46910 * 299.99456 * 1 2 3 27 27 H 1.08995 * 109.47125 * 59.99771 * 1 2 3 28 28 H 1.09002 * 109.47123 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47171 * 239.99821 * 2 1 3 30 30 H 1.09000 * 109.46979 * 119.99780 * 2 1 3 31 31 H 0.96998 * 120.00328 * 180.02562 * 8 7 5 32 32 H 0.96997 * 119.99745 * 95.00278 * 13 3 2 33 33 H 0.97004 * 120.00270 * 0.02562 * 16 14 13 34 34 H 1.08002 * 120.37473 * 359.97438 * 21 20 19 35 35 H 1.07996 * 120.08457 * 179.72415 * 22 21 20 36 36 H 1.08000 * 119.78817 * 180.34220 * 23 22 21 37 37 H 1.07995 * 119.76301 * 179.67177 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8801 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4962 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6092 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6644 1.3670 15 8 -0.3416 2.6317 0.4320 16 7 0.0788 3.2673 2.5184 17 6 -1.1801 3.8542 2.6374 18 7 -2.1110 3.8926 1.7120 19 7 -3.1507 4.5106 2.1504 20 6 -2.9410 4.9067 3.3929 21 6 -3.7220 5.6099 4.3318 22 6 -3.2044 5.8748 5.5606 23 6 -1.9074 5.4354 5.8834 24 6 -1.1686 4.7639 4.9768 25 7 -1.6721 4.4941 3.7357 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0610 -2.9499 32 1 2.2720 2.1231 1.9978 33 1 0.6985 3.2937 3.2642 34 1 -4.7184 5.9389 4.0763 35 1 -3.7893 6.4167 6.2891 36 1 -1.4990 5.6414 6.8617 37 1 -0.1723 4.4361 5.2341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157396376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:43 Heat of formation + Delta-G solvation = 98.204342 kcal Electronic energy + Delta-G solvation = -22511.219639 eV Core-core repulsion = 19098.386025 eV Total energy + Delta-G solvation = -3412.833615 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.49911 -39.65259 -38.19509 -35.77233 -34.66940 -33.40736 -32.39646 -31.20231 -30.77883 -28.69964 -26.91182 -24.39507 -23.54935 -23.41297 -22.54123 -20.57407 -19.62022 -18.99244 -18.14306 -17.33311 -16.76449 -16.68257 -16.05840 -15.60871 -15.12035 -14.97539 -14.80538 -14.17085 -13.43546 -12.85331 -12.78782 -12.67623 -12.36030 -12.30979 -11.70001 -11.49154 -11.45762 -11.27414 -10.97664 -10.87601 -10.44913 -10.38818 -10.32276 -10.19236 -9.63321 -9.44667 -9.36818 -9.05896 -8.53301 -7.98411 -7.66164 -6.14836 -4.24735 0.43102 1.02515 1.70625 2.72542 2.96016 3.21056 3.22009 3.30123 3.32078 3.86382 3.92730 4.25488 4.28375 4.48639 4.58785 4.65023 4.79684 5.16795 5.26472 5.35439 5.61286 5.67899 5.83926 6.02531 6.31243 6.43045 6.50062 6.65352 6.81610 6.87801 7.08882 7.28369 7.34247 7.42376 7.61674 7.79934 7.89650 8.15921 8.57722 8.71683 8.82038 9.16282 9.42878 10.90536 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.032744 B = 0.003516 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.902568 B = 7961.297662 C = 8465.000636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.053 0.947 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.879 5.879 9 Si 0.903 3.097 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.713 5.713 14 C 0.692 3.308 15 O -0.528 6.528 16 N -0.651 5.651 17 C 0.411 3.589 18 N -0.225 5.225 19 N -0.272 5.272 20 C 0.177 3.823 21 C -0.065 4.065 22 C -0.103 4.103 23 C -0.140 4.140 24 C 0.063 3.937 25 N -0.414 5.414 26 H 0.037 0.963 27 H 0.052 0.948 28 H 0.022 0.978 29 H 0.101 0.899 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.385 0.615 33 H 0.407 0.593 34 H 0.156 0.844 35 H 0.144 0.856 36 H 0.153 0.847 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 9.091 19.416 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.516 5.516 9 Si 0.730 3.270 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.366 5.366 14 C 0.391 3.609 15 O -0.398 6.398 16 N -0.309 5.309 17 C 0.059 3.941 18 N -0.070 5.070 19 N -0.116 5.116 20 C -0.074 4.074 21 C -0.086 4.086 22 C -0.127 4.127 23 C -0.162 4.162 24 C -0.058 4.058 25 N -0.102 5.102 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.119 0.881 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.217 0.783 33 H 0.242 0.758 34 H 0.174 0.826 35 H 0.162 0.838 36 H 0.170 0.830 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.834 8.545 16.683 20.722 hybrid contribution 2.423 0.157 2.045 3.174 sum -6.410 8.702 18.728 21.623 Atomic orbital electron populations 1.21827 0.98083 0.98055 1.01460 1.21971 0.92791 0.99688 1.02288 1.18808 0.94117 0.88950 0.79540 0.92942 1.21223 0.90471 1.39266 1.06420 0.92013 1.24878 0.98652 0.94782 0.95340 1.69906 1.35074 1.37376 1.09290 0.86382 0.84731 0.77770 0.78115 1.19809 1.20863 1.20848 1.45808 1.12541 1.58712 1.19547 1.15932 0.84250 0.79337 0.81380 1.91073 1.50877 1.61595 1.36298 1.42041 1.11395 1.59276 1.18189 1.20791 0.90840 0.98972 0.83521 1.75124 0.95790 1.16075 1.20004 1.74963 1.18182 1.13403 1.05083 1.22053 0.84533 1.04883 0.95921 1.20257 0.99880 0.97438 0.91031 1.21096 0.95412 0.99768 0.96469 1.20842 0.95212 1.00293 0.99871 1.21602 1.00457 1.00915 0.82827 1.43543 1.15130 1.40397 1.11139 0.94416 0.92883 0.95892 0.88131 0.95065 0.92504 0.78271 0.75777 0.82634 0.83810 0.82989 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.51 37.16 0.32 -2.84 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.29 7.10 2.24 -69.08 -0.15 6.95 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -13.76 8.73 -34.45 -0.30 -14.06 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.75 16 9 Si 0.90 20.25 29.54 -169.99 -5.02 15.22 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.71 -14.27 5.03 -59.81 -0.30 -14.57 16 14 C 0.69 14.04 7.10 -86.92 -0.62 13.43 16 15 O -0.53 -13.13 12.20 5.28 0.06 -13.06 16 16 N -0.65 -10.12 5.42 -16.70 -0.09 -10.21 16 17 C 0.41 6.98 8.72 -317.76 -2.77 4.21 16 18 N -0.22 -4.67 10.43 30.47 0.32 -4.35 16 19 N -0.27 -5.02 12.28 31.21 0.38 -4.64 16 20 C 0.18 2.50 7.93 -155.81 -1.24 1.26 16 21 C -0.06 -0.59 10.11 -39.39 -0.40 -0.99 16 22 C -0.10 -0.64 10.06 -39.48 -0.40 -1.04 16 23 C -0.14 -0.82 9.98 -39.86 -0.40 -1.22 16 24 C 0.06 0.51 11.00 -16.61 -0.18 0.33 16 25 N -0.41 -5.41 2.98 -63.01 -0.19 -5.60 16 26 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 27 H 0.05 1.32 7.84 -51.93 -0.41 0.91 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.39 6.36 8.55 -40.82 -0.35 6.01 16 33 H 0.41 4.32 8.84 -40.82 -0.36 3.96 16 34 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 36 H 0.15 0.37 8.06 -52.49 -0.42 -0.06 16 37 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 314.58 15.07 4.74 4.74 Total: -1.00 -35.24 314.58 -10.04 -45.28 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.19 Total: 6.48 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -6.38 Total: 4.46 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: 0.75 Total: -63.12 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.06 Total: -13.06 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.24 -10.04 -45.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157396376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.481 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds