Wall clock time and date at job start Tue Mar 31 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47128 * 2 1 4 4 H 1.09002 * 109.46848 * 305.00299 * 3 2 1 5 5 C 1.50693 * 109.47307 * 185.00263 * 3 2 1 6 6 H 1.08008 * 119.99889 * 240.00345 * 5 3 2 7 7 C 1.37870 * 120.00354 * 59.99697 * 5 3 2 8 8 N 1.31519 * 120.00022 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00389 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47118 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47303 * 120.00067 * 9 7 5 12 12 H 1.48497 * 109.47142 * 239.99972 * 9 7 5 13 13 N 1.46507 * 109.47063 * 65.00015 * 3 2 1 14 14 C 1.34782 * 119.99934 * 275.00059 * 13 3 2 15 15 O 1.21593 * 119.99524 * 0.02562 * 14 13 3 16 16 N 1.34769 * 119.99855 * 180.02562 * 14 13 3 17 17 C 1.39406 * 120.00194 * 179.97438 * 16 14 13 18 18 N 1.31311 * 126.32005 * 359.97438 * 17 16 14 19 19 N 1.28657 * 110.28987 * 180.02562 * 18 17 16 20 20 C 1.32083 * 109.65158 * 0.02562 * 19 18 17 21 21 C 1.40920 * 133.50309 * 179.97438 * 20 19 18 22 22 C 1.35946 * 119.24247 * 180.27861 * 21 20 19 23 23 C 1.40689 * 119.83131 * 359.39986 * 22 21 20 24 24 C 1.34850 * 120.42301 * 0.64724 * 23 22 21 25 25 N 1.36296 * 126.32651 * 179.97438 * 17 16 14 26 26 H 1.08999 * 109.46910 * 299.99456 * 1 2 3 27 27 H 1.08995 * 109.47125 * 59.99771 * 1 2 3 28 28 H 1.09002 * 109.47123 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47171 * 239.99821 * 2 1 3 30 30 H 1.09000 * 109.46979 * 119.99780 * 2 1 3 31 31 H 0.96998 * 120.00328 * 180.02562 * 8 7 5 32 32 H 0.96997 * 119.99745 * 95.00278 * 13 3 2 33 33 H 0.97004 * 120.00270 * 0.02562 * 16 14 13 34 34 H 1.08002 * 120.37473 * 359.97438 * 21 20 19 35 35 H 1.07996 * 120.08457 * 179.72415 * 22 21 20 36 36 H 1.08000 * 119.78817 * 180.34220 * 23 22 21 37 37 H 1.07995 * 119.76301 * 179.67177 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8801 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4962 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6092 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6644 1.3670 15 8 -0.3416 2.6317 0.4320 16 7 0.0788 3.2673 2.5184 17 6 -1.1801 3.8542 2.6374 18 7 -2.1110 3.8926 1.7120 19 7 -3.1507 4.5106 2.1504 20 6 -2.9410 4.9067 3.3929 21 6 -3.7220 5.6099 4.3318 22 6 -3.2044 5.8748 5.5606 23 6 -1.9074 5.4354 5.8834 24 6 -1.1686 4.7639 4.9768 25 7 -1.6721 4.4941 3.7357 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0610 -2.9499 32 1 2.2720 2.1231 1.9978 33 1 0.6985 3.2937 3.2642 34 1 -4.7184 5.9389 4.0763 35 1 -3.7893 6.4167 6.2891 36 1 -1.4990 5.6414 6.8617 37 1 -0.1723 4.4361 5.2341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157396376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:42 Heat of formation + Delta-G solvation = 75.028928 kcal Electronic energy + Delta-G solvation = -22512.224601 eV Core-core repulsion = 19098.386025 eV Total energy + Delta-G solvation = -3413.838576 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.54840 -41.23016 -39.05536 -37.42092 -36.17517 -34.56101 -34.18213 -32.70211 -31.94653 -29.85270 -28.77304 -25.36838 -25.11611 -24.36694 -24.02631 -22.06041 -21.38560 -20.27344 -19.55556 -18.35278 -17.95126 -17.86135 -17.50466 -16.96717 -16.46370 -16.23954 -15.92486 -15.66478 -15.14791 -14.57713 -14.24665 -13.64227 -13.52008 -13.41236 -13.19180 -13.10330 -12.87307 -12.75588 -12.65012 -12.42648 -12.17569 -12.05939 -11.63596 -11.57065 -11.38107 -11.17831 -11.03157 -10.54116 -10.36181 -9.72423 -8.74128 -8.14819 -6.32442 -0.23441 0.14067 0.56783 1.46494 1.47585 1.58255 1.59286 1.85045 2.30855 2.42494 2.43379 3.05488 3.15361 3.29402 3.52690 3.78980 3.93508 4.15072 4.32182 4.49213 4.56029 4.68950 4.74825 4.83563 5.04187 5.06766 5.12952 5.22234 5.24724 5.43113 5.47893 5.55235 5.60616 5.66577 5.83346 5.92159 6.08183 6.16341 6.75099 7.07413 7.35075 7.55660 7.67060 8.91137 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.032744 B = 0.003516 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.902568 B = 7961.297662 C = 8465.000636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.297 3.703 4 H -0.002 1.002 5 C -0.545 4.545 6 H 0.077 0.923 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.973 3.027 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.287 1.287 13 N -0.704 5.704 14 C 0.695 3.305 15 O -0.579 6.579 16 N -0.629 5.629 17 C 0.386 3.614 18 N -0.288 5.288 19 N -0.339 5.339 20 C 0.186 3.814 21 C -0.104 4.104 22 C -0.061 4.061 23 C -0.120 4.120 24 C 0.037 3.963 25 N -0.406 5.406 26 H 0.037 0.963 27 H 0.022 0.978 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.265 0.735 32 H 0.406 0.594 33 H 0.431 0.569 34 H 0.172 0.828 35 H 0.192 0.808 36 H 0.204 0.796 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.444 10.503 24.399 27.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.016 0.984 5 C -0.583 4.583 6 H 0.096 0.904 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.798 3.202 10 H -0.181 1.181 11 H -0.205 1.205 12 H -0.213 1.213 13 N -0.358 5.358 14 C 0.394 3.606 15 O -0.453 6.453 16 N -0.288 5.288 17 C 0.031 3.969 18 N -0.132 5.132 19 N -0.184 5.184 20 C -0.065 4.065 21 C -0.125 4.125 22 C -0.085 4.085 23 C -0.141 4.141 24 C -0.083 4.083 25 N -0.092 5.092 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.241 0.759 33 H 0.271 0.729 34 H 0.190 0.810 35 H 0.209 0.791 36 H 0.220 0.780 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.693 9.994 21.771 25.161 hybrid contribution 1.946 -0.100 0.806 2.109 sum -5.747 9.894 22.577 25.311 Atomic orbital electron populations 1.21647 0.97431 0.98827 0.99969 1.21811 0.93187 0.99253 1.01612 1.18349 0.93752 0.88757 0.79780 0.98398 1.21568 0.90893 1.38976 1.06866 0.90450 1.25792 1.03409 0.94396 0.94991 1.70070 1.37094 1.38305 1.09896 0.85278 0.78920 0.77763 0.78212 1.18101 1.20526 1.21342 1.45323 1.13076 1.58586 1.18860 1.15937 0.83606 0.79116 0.81942 1.91051 1.52283 1.63299 1.38679 1.41312 1.11649 1.58385 1.17463 1.20545 0.90731 1.00809 0.84771 1.74881 0.97482 1.17871 1.22979 1.74796 1.18685 1.16877 1.08006 1.22827 0.85161 1.03218 0.95290 1.20673 1.00861 0.99278 0.91681 1.21796 0.95399 0.96038 0.95287 1.21589 0.94395 0.97154 1.00968 1.22570 1.02705 1.01903 0.81131 1.43590 1.14540 1.39319 1.11762 0.94438 0.95872 0.93755 0.90744 0.93516 0.92594 0.75895 0.72893 0.81035 0.79057 0.77950 0.78498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.51 71.98 0.61 -5.23 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.79 16 3 C 0.30 15.21 2.24 44.24 0.10 15.31 16 4 H 0.00 -0.12 7.58 -2.39 -0.02 -0.14 16 5 C -0.54 -28.13 8.73 25.60 0.22 -27.91 16 6 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 7 C 0.01 0.76 5.29 84.65 0.45 1.21 16 8 N -0.92 -52.40 11.29 21.45 0.24 -52.16 16 9 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 10 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.70 -28.55 5.03 -461.40 -2.32 -30.86 16 14 C 0.70 29.26 7.10 179.05 1.27 30.53 16 15 O -0.58 -30.84 12.20 -4.01 -0.05 -30.89 16 16 N -0.63 -19.65 5.42 -325.01 -1.76 -21.41 16 17 C 0.39 13.50 8.72 259.72 2.26 15.77 16 18 N -0.29 -12.89 10.43 -57.51 -0.60 -13.48 16 19 N -0.34 -13.46 12.28 -55.19 -0.68 -14.14 16 20 C 0.19 5.27 7.93 134.02 1.06 6.34 16 21 C -0.10 -1.65 10.11 22.39 0.23 -1.42 16 22 C -0.06 -0.41 10.06 22.34 0.22 -0.18 16 23 C -0.12 -0.64 9.98 22.09 0.22 -0.42 16 24 C 0.04 0.45 11.00 83.17 0.92 1.36 16 25 N -0.41 -10.19 2.98 -353.26 -1.05 -11.24 16 26 H 0.04 1.78 5.64 -2.39 -0.01 1.76 16 27 H 0.02 1.20 7.84 -2.39 -0.02 1.19 16 28 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.07 4.14 5.95 -2.39 -0.01 4.13 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.41 12.93 8.55 -92.71 -0.79 12.14 16 33 H 0.43 8.49 8.84 -92.71 -0.82 7.67 16 34 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.19 -0.40 8.06 -2.91 -0.02 -0.42 16 36 H 0.20 -0.79 8.06 -2.91 -0.02 -0.82 16 37 H 0.20 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -86.73 314.58 3.06 -83.67 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -0.48 Total: 17.51 kcal Atomic # 6 Polarization: 21.83 SS G_CDS: 7.73 Total: 29.56 kcal Atomic # 7 Polarization: -137.12 SS G_CDS: -6.17 Total: -143.29 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.05 Total: -30.89 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -86.73 3.06 -83.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157396376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.695 kcal (2) G-P(sol) polarization free energy of solvation -86.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds