Wall clock time and date at job start Tue Mar 31 2020 06:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00294 * 2 1 4 4 C 1.50693 * 109.47292 * 66.03907 * 3 2 1 5 5 H 1.08000 * 120.00674 * 0.02562 * 4 3 2 6 6 C 1.37885 * 120.00028 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99739 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00105 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47000 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47293 * 119.99569 * 8 6 4 11 11 H 1.48501 * 109.47281 * 240.00013 * 8 6 4 12 12 C 1.46904 * 110.99953 * 236.03903 * 2 1 3 13 13 C 1.50694 * 109.47252 * 288.72227 * 12 2 1 14 14 C 1.35089 * 126.07248 * 105.55279 * 13 12 2 15 15 N 1.35038 * 107.97949 * 179.77470 * 14 13 12 16 16 H 0.96992 * 125.93322 * 180.22332 * 15 14 13 17 17 N 1.40069 * 108.13867 * 0.22912 * 15 14 13 18 18 C 1.31620 * 108.11069 * 359.97438 * 17 15 14 19 19 C 1.48413 * 126.04081 * 180.02562 * 18 17 15 20 20 C 1.39334 * 120.09589 * 136.20023 * 19 18 17 21 21 C 1.37986 * 119.90477 * 179.71524 * 20 19 18 22 22 C 1.38541 * 120.09439 * 0.58297 * 21 20 19 23 23 F 1.35100 * 119.90697 * 179.68873 * 22 21 20 24 24 C 1.38539 * 120.19142 * 359.67066 * 22 21 20 25 25 C 1.37989 * 120.09264 * 0.04718 * 24 22 21 26 26 H 1.08996 * 109.47437 * 183.05496 * 1 2 3 27 27 H 1.08997 * 109.47246 * 303.06322 * 1 2 3 28 28 H 1.09007 * 109.46620 * 63.05555 * 1 2 3 29 29 H 1.08994 * 109.47384 * 186.04766 * 3 2 1 30 30 H 1.09009 * 109.46707 * 306.04303 * 3 2 1 31 31 H 0.97008 * 119.99706 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46607 * 168.72105 * 12 2 1 33 33 H 1.08999 * 109.46776 * 48.72664 * 12 2 1 34 34 H 1.08003 * 126.01249 * 0.03953 * 14 13 12 35 35 H 1.07995 * 120.04502 * 0.02562 * 20 19 18 36 36 H 1.08000 * 119.95039 * 180.24899 * 21 20 19 37 37 H 1.08001 * 119.95981 * 180.02562 * 24 22 21 38 38 H 1.08001 * 120.05128 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2983 5 1 1.0745 1.5114 2.0487 6 6 2.0268 3.3496 1.5283 7 7 2.7121 4.0018 0.6148 8 14 1.5830 4.1870 3.1379 9 1 0.8155 3.2445 3.9911 10 1 2.8248 4.5945 3.8429 11 1 0.7551 5.3879 2.8593 12 6 1.9955 -0.7661 -1.1375 13 6 1.7497 -2.2355 -0.9104 14 6 0.8181 -2.9914 -1.5313 15 7 0.9201 -4.2516 -1.0569 16 1 0.3765 -5.0077 -1.3282 17 7 1.9473 -4.2774 -0.1050 18 6 2.4488 -3.0641 -0.0112 19 6 3.5582 -2.6443 0.8808 20 6 4.5681 -1.8152 0.3970 21 6 5.5946 -1.4225 1.2314 22 6 5.6284 -1.8613 2.5451 23 9 6.6386 -1.4796 3.3569 24 6 4.6292 -2.6900 3.0288 25 6 3.5959 -3.0828 2.2028 26 1 -0.3634 -1.0261 0.0548 27 1 -0.3633 0.5606 0.8612 28 1 -0.3633 0.4657 -0.9162 29 1 3.0797 1.3443 -0.1083 30 1 1.5612 1.9273 -0.8310 31 1 2.9861 4.9182 0.7765 32 1 3.0665 -0.5871 -1.2315 33 1 1.4928 -0.4507 -2.0518 34 1 0.1179 -2.6492 -2.2790 35 1 4.5448 -1.4763 -0.6281 36 1 6.3756 -0.7766 0.8583 37 1 4.6590 -3.0295 4.0536 38 1 2.8170 -3.7286 2.5807 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157796756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:29 Heat of formation + Delta-G solvation = 60.663070 kcal Electronic energy + Delta-G solvation = -22617.549056 eV Core-core repulsion = 19183.167568 eV Total energy + Delta-G solvation = -3434.381488 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.62955 -41.11958 -38.46841 -36.43848 -32.76379 -32.32161 -31.05756 -30.42778 -29.12696 -27.07035 -26.35693 -23.59367 -23.26253 -22.70729 -20.70719 -20.36207 -19.49413 -17.55464 -17.39808 -16.22171 -15.97529 -15.57423 -15.31315 -14.97490 -14.57657 -14.32622 -13.91129 -13.64676 -13.52610 -13.30528 -13.25520 -12.84632 -12.22642 -12.08447 -11.92203 -11.85593 -11.29572 -11.06239 -10.88190 -10.81001 -10.60503 -10.47150 -10.37791 -9.81872 -9.60827 -9.17493 -8.83606 -8.47889 -8.38779 -8.02159 -7.14596 -5.98663 -3.98719 1.17310 1.53008 2.04917 2.88112 2.94218 3.33948 3.41655 3.46710 3.92563 4.47409 4.50719 4.61131 4.90393 4.99269 5.10816 5.24701 5.37859 5.45797 5.47694 5.54587 5.68138 5.89613 6.06591 6.12461 6.21169 6.27031 6.30630 6.35876 6.39927 6.44856 6.68071 6.76588 6.80180 7.11440 7.32267 7.34812 7.38787 7.74432 7.86299 8.14300 8.26975 8.61484 9.09329 9.65337 11.12242 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.006510 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.198331 B = 4300.070196 C = 6113.291314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.531 5.531 3 C 0.194 3.806 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.894 3.106 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.123 3.877 13 C -0.193 4.193 14 C 0.051 3.949 15 N -0.481 5.481 16 H 0.437 0.563 17 N -0.291 5.291 18 C 0.137 3.863 19 C -0.005 4.005 20 C -0.055 4.055 21 C -0.146 4.146 22 C 0.101 3.899 23 F -0.143 7.143 24 C -0.155 4.155 25 C -0.064 4.064 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.008 0.992 29 H 0.030 0.970 30 H -0.011 1.011 31 H 0.260 0.740 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.173 0.827 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 -15.382 -3.599 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.255 5.255 3 C 0.070 3.930 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.006 4.006 13 C -0.204 4.204 14 C -0.095 4.095 15 N -0.189 5.189 16 H 0.280 0.720 17 N -0.114 5.114 18 C -0.029 4.029 19 C -0.007 4.007 20 C -0.075 4.075 21 C -0.165 4.165 22 C 0.081 3.919 23 F -0.122 7.122 24 C -0.174 4.174 25 C -0.083 4.083 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.026 0.974 29 H 0.048 0.952 30 H 0.007 0.993 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.190 0.810 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.398 -16.603 -2.771 16.837 hybrid contribution -0.858 1.607 -0.232 1.836 sum -0.460 -14.996 -3.002 15.300 Atomic orbital electron populations 1.22160 0.89149 0.99130 1.00248 1.62048 1.06693 1.17291 1.39470 1.19724 0.95317 0.81516 0.96490 1.21188 1.34423 0.96717 1.01674 0.91929 1.24957 0.95392 0.97388 0.96809 1.69963 1.38646 1.11344 1.33991 0.86505 0.78178 0.79312 0.83835 1.19707 1.21007 1.21207 1.20408 1.00204 0.87363 0.92644 1.20210 1.00644 0.97548 1.02030 1.22285 1.00787 0.85290 1.01170 1.46076 1.29990 1.09450 1.33392 0.71959 1.77503 1.03536 1.20333 1.10065 1.20447 0.95891 0.90422 0.96129 1.17639 0.92433 0.98379 0.92261 1.20931 0.91886 0.94597 1.00045 1.20998 1.00980 1.02144 0.92344 1.17755 0.86942 0.98339 0.88830 1.91477 1.58331 1.89816 1.72588 1.20952 0.94943 1.00554 1.00966 1.20920 0.97069 0.98121 0.92229 0.94009 0.91012 0.97351 0.95214 0.99340 0.93083 0.90636 0.95274 0.80979 0.84826 0.84538 0.84891 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.20 60.07 0.55 1.36 16 2 N -0.53 -11.14 4.70 -245.83 -1.16 -12.30 16 3 C 0.19 4.95 4.72 -4.98 -0.02 4.92 16 4 C -0.50 -14.00 8.47 -34.44 -0.29 -14.30 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 8 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.12 2.12 4.96 -4.98 -0.02 2.09 16 13 C -0.19 -2.94 4.79 -104.76 -0.50 -3.44 16 14 C 0.05 0.61 11.57 -17.26 -0.20 0.41 16 15 N -0.48 -5.47 7.35 30.42 0.22 -5.25 16 16 H 0.44 3.27 8.96 -182.63 -1.64 1.64 16 17 N -0.29 -4.31 12.74 33.43 0.43 -3.88 16 18 C 0.14 2.17 6.66 -82.78 -0.55 1.62 16 19 C 0.00 -0.08 5.73 -104.89 -0.60 -0.68 16 20 C -0.06 -0.85 8.89 -39.27 -0.35 -1.20 16 21 C -0.15 -2.22 10.01 -39.56 -0.40 -2.62 16 22 C 0.10 1.57 7.30 -39.36 -0.29 1.28 16 23 F -0.14 -2.26 17.26 2.25 0.04 -2.22 16 24 C -0.16 -2.24 10.01 -39.56 -0.40 -2.63 16 25 C -0.06 -0.96 9.78 -39.26 -0.38 -1.34 16 26 H 0.04 0.71 7.20 -51.93 -0.37 0.34 16 27 H 0.07 1.51 6.78 -51.93 -0.35 1.16 16 28 H 0.01 0.15 8.13 -51.92 -0.42 -0.27 16 29 H 0.03 0.80 7.87 -51.93 -0.41 0.39 16 30 H -0.01 -0.30 8.12 -51.92 -0.42 -0.73 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.08 1.30 5.49 -51.93 -0.29 1.01 16 33 H 0.03 0.47 8.03 -51.93 -0.42 0.06 16 34 H 0.17 1.50 8.06 -52.48 -0.42 1.07 16 35 H 0.13 1.91 6.28 -52.49 -0.33 1.58 16 36 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -32.23 328.27 -9.20 -41.44 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.85 Total: -0.67 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -3.55 Total: -13.05 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.23 Total: -47.27 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.23 -9.20 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157796756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.099 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds