Wall clock time and date at job start Tue Mar 31 2020 06:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00294 * 2 1 4 4 C 1.50693 * 109.47292 * 66.03907 * 3 2 1 5 5 H 1.08000 * 120.00674 * 0.02562 * 4 3 2 6 6 C 1.37885 * 120.00028 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99739 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00105 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47000 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47293 * 119.99569 * 8 6 4 11 11 H 1.48501 * 109.47281 * 240.00013 * 8 6 4 12 12 C 1.46904 * 110.99953 * 236.03903 * 2 1 3 13 13 C 1.50694 * 109.47252 * 288.72227 * 12 2 1 14 14 C 1.35089 * 126.07248 * 105.55279 * 13 12 2 15 15 N 1.35038 * 107.97949 * 179.77470 * 14 13 12 16 16 H 0.96992 * 125.93322 * 180.22332 * 15 14 13 17 17 N 1.40069 * 108.13867 * 0.22912 * 15 14 13 18 18 C 1.31620 * 108.11069 * 359.97438 * 17 15 14 19 19 C 1.48413 * 126.04081 * 180.02562 * 18 17 15 20 20 C 1.39334 * 120.09589 * 136.20023 * 19 18 17 21 21 C 1.37986 * 119.90477 * 179.71524 * 20 19 18 22 22 C 1.38541 * 120.09439 * 0.58297 * 21 20 19 23 23 F 1.35100 * 119.90697 * 179.68873 * 22 21 20 24 24 C 1.38539 * 120.19142 * 359.67066 * 22 21 20 25 25 C 1.37989 * 120.09264 * 0.04718 * 24 22 21 26 26 H 1.08996 * 109.47437 * 183.05496 * 1 2 3 27 27 H 1.08997 * 109.47246 * 303.06322 * 1 2 3 28 28 H 1.09007 * 109.46620 * 63.05555 * 1 2 3 29 29 H 1.08994 * 109.47384 * 186.04766 * 3 2 1 30 30 H 1.09009 * 109.46707 * 306.04303 * 3 2 1 31 31 H 0.97008 * 119.99706 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46607 * 168.72105 * 12 2 1 33 33 H 1.08999 * 109.46776 * 48.72664 * 12 2 1 34 34 H 1.08003 * 126.01249 * 0.03953 * 14 13 12 35 35 H 1.07995 * 120.04502 * 0.02562 * 20 19 18 36 36 H 1.08000 * 119.95039 * 180.24899 * 21 20 19 37 37 H 1.08001 * 119.95981 * 180.02562 * 24 22 21 38 38 H 1.08001 * 120.05128 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2983 5 1 1.0745 1.5114 2.0487 6 6 2.0268 3.3496 1.5283 7 7 2.7121 4.0018 0.6148 8 14 1.5830 4.1870 3.1379 9 1 0.8155 3.2445 3.9911 10 1 2.8248 4.5945 3.8429 11 1 0.7551 5.3879 2.8593 12 6 1.9955 -0.7661 -1.1375 13 6 1.7497 -2.2355 -0.9104 14 6 0.8181 -2.9914 -1.5313 15 7 0.9201 -4.2516 -1.0569 16 1 0.3765 -5.0077 -1.3282 17 7 1.9473 -4.2774 -0.1050 18 6 2.4488 -3.0641 -0.0112 19 6 3.5582 -2.6443 0.8808 20 6 4.5681 -1.8152 0.3970 21 6 5.5946 -1.4225 1.2314 22 6 5.6284 -1.8613 2.5451 23 9 6.6386 -1.4796 3.3569 24 6 4.6292 -2.6900 3.0288 25 6 3.5959 -3.0828 2.2028 26 1 -0.3634 -1.0261 0.0548 27 1 -0.3633 0.5606 0.8612 28 1 -0.3633 0.4657 -0.9162 29 1 3.0797 1.3443 -0.1083 30 1 1.5612 1.9273 -0.8310 31 1 2.9861 4.9182 0.7765 32 1 3.0665 -0.5871 -1.2315 33 1 1.4928 -0.4507 -2.0518 34 1 0.1179 -2.6492 -2.2790 35 1 4.5448 -1.4763 -0.6281 36 1 6.3756 -0.7766 0.8583 37 1 4.6590 -3.0295 4.0536 38 1 2.8170 -3.7286 2.5807 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157796756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:28 Heat of formation + Delta-G solvation = 40.201178 kcal Electronic energy + Delta-G solvation = -22618.436350 eV Core-core repulsion = 19183.167568 eV Total energy + Delta-G solvation = -3435.268782 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.85105 -42.18922 -39.61657 -38.07763 -34.71726 -33.55470 -32.27714 -31.69412 -30.25332 -29.00765 -27.77689 -25.36007 -24.40848 -23.90695 -22.28686 -21.61740 -20.62685 -18.72996 -18.60435 -18.22615 -17.16828 -16.76147 -16.66828 -16.53523 -16.05509 -15.82063 -15.18278 -15.11035 -15.04632 -14.49395 -14.40821 -14.02506 -13.96449 -13.51315 -13.29811 -13.20488 -12.98026 -12.80476 -12.56463 -12.36905 -12.23788 -12.00513 -11.74437 -11.57944 -11.21882 -10.67574 -10.56759 -10.00412 -9.59385 -9.18629 -8.82051 -8.15069 -6.23026 -0.00618 0.36161 1.02358 1.40624 1.42581 1.54635 1.73946 2.02232 2.43675 2.74992 3.17691 3.32794 3.49571 3.62285 3.82909 3.98200 4.06779 4.25826 4.32135 4.44306 4.51745 4.61918 4.74117 4.82281 4.89194 4.98410 5.04752 5.11913 5.18878 5.20676 5.22997 5.29224 5.42522 5.52143 5.61573 5.71860 5.95200 6.14391 6.46431 6.48943 6.70691 6.79307 6.94185 7.46090 8.95428 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.006510 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.198331 B = 4300.070196 C = 6113.291314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.539 5.539 3 C 0.212 3.788 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.005 3.995 7 N -0.932 5.932 8 Si 0.958 3.042 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.278 1.278 12 C 0.128 3.872 13 C -0.225 4.225 14 C 0.081 3.919 15 N -0.461 5.461 16 H 0.456 0.544 17 N -0.309 5.309 18 C 0.122 3.878 19 C -0.017 4.017 20 C -0.067 4.067 21 C -0.155 4.155 22 C 0.083 3.917 23 F -0.147 7.147 24 C -0.152 4.152 25 C -0.072 4.072 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.015 0.985 29 H 0.006 0.994 30 H -0.037 1.037 31 H 0.263 0.737 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.213 0.787 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 -16.646 -3.574 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.263 5.263 3 C 0.086 3.914 4 C -0.553 4.553 5 H 0.075 0.925 6 C -0.193 4.193 7 N -0.573 5.573 8 Si 0.784 3.216 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.000 4.000 13 C -0.236 4.236 14 C -0.068 4.068 15 N -0.171 5.171 16 H 0.304 0.696 17 N -0.133 5.133 18 C -0.043 4.043 19 C -0.020 4.020 20 C -0.086 4.086 21 C -0.174 4.174 22 C 0.064 3.936 23 F -0.126 7.126 24 C -0.170 4.170 25 C -0.091 4.091 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.033 0.967 29 H 0.024 0.976 30 H -0.019 1.019 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.230 0.770 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.175 0.825 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.167 -17.916 -2.749 18.164 hybrid contribution -0.420 1.903 -0.325 1.976 sum -1.588 -16.013 -3.074 16.382 Atomic orbital electron populations 1.22098 0.87998 1.00447 0.99496 1.61947 1.07771 1.14631 1.41956 1.19330 0.93710 0.83810 0.94546 1.21472 1.34194 0.97174 1.02446 0.92505 1.25777 0.95270 0.98127 1.00123 1.70072 1.39622 1.11764 1.35883 0.85497 0.78007 0.78362 0.79763 1.19092 1.20688 1.20328 1.20326 0.99666 0.88383 0.91643 1.20041 1.02941 0.96497 1.04151 1.22753 0.99400 0.84619 1.00010 1.46120 1.28889 1.10156 1.31907 0.69642 1.77455 1.04657 1.19918 1.11315 1.20482 0.96215 0.91000 0.96588 1.17896 0.92730 0.98399 0.92942 1.21048 0.92144 0.95002 1.00407 1.21201 1.01337 1.02311 0.92560 1.17956 0.87449 0.99203 0.89026 1.91460 1.58543 1.89967 1.72640 1.21217 0.94136 0.99659 1.02028 1.21120 0.97541 0.98369 0.92074 0.91283 0.93329 0.96695 0.97629 1.01939 0.92861 0.91552 0.94031 0.77036 0.84437 0.83613 0.82523 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.80 9.20 127.69 1.17 2.97 16 2 N -0.54 -22.54 4.70 -931.67 -4.38 -26.92 16 3 C 0.21 11.07 4.72 85.56 0.40 11.47 16 4 C -0.51 -29.15 8.47 25.60 0.22 -28.93 16 5 H 0.06 3.22 7.12 -2.91 -0.02 3.20 16 6 C 0.00 0.28 5.46 84.66 0.46 0.74 16 7 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 8 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 C 0.13 4.33 4.96 85.55 0.42 4.75 16 13 C -0.22 -6.40 4.79 -19.95 -0.10 -6.50 16 14 C 0.08 1.62 11.57 83.47 0.97 2.59 16 15 N -0.46 -8.86 7.35 -57.67 -0.42 -9.28 16 16 H 0.46 5.00 8.96 -213.35 -1.91 3.09 16 17 N -0.31 -8.50 12.74 -48.16 -0.61 -9.11 16 18 C 0.12 3.71 6.66 42.53 0.28 4.00 16 19 C -0.02 -0.56 5.73 -20.04 -0.11 -0.67 16 20 C -0.07 -2.11 8.89 22.47 0.20 -1.91 16 21 C -0.16 -4.85 10.01 22.28 0.22 -4.63 16 22 C 0.08 2.60 7.30 22.41 0.16 2.76 16 23 F -0.15 -4.65 17.26 44.97 0.78 -3.88 16 24 C -0.15 -4.29 10.01 22.28 0.22 -4.07 16 25 C -0.07 -2.11 9.78 22.48 0.22 -1.89 16 26 H 0.07 2.18 7.20 -2.39 -0.02 2.17 16 27 H 0.05 2.02 6.78 -2.39 -0.02 2.00 16 28 H 0.01 0.53 8.13 -2.38 -0.02 0.51 16 29 H 0.01 0.31 7.87 -2.39 -0.02 0.30 16 30 H -0.04 -2.08 8.12 -2.38 -0.02 -2.10 16 31 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 32 H 0.07 2.32 5.49 -2.39 -0.01 2.31 16 33 H 0.04 1.29 8.03 -2.39 -0.02 1.27 16 34 H 0.21 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.14 4.08 6.28 -2.91 -0.02 4.07 16 36 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 37 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 38 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -69.73 328.27 1.60 -68.13 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -0.82 Total: 9.08 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 4.75 Total: -19.32 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -5.13 Total: -100.97 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.78 Total: -3.88 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -69.73 1.60 -68.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157796756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.335 kcal (2) G-P(sol) polarization free energy of solvation -69.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds