Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47513 * 2 1 4 4 H 1.08998 * 109.47130 * 54.99642 * 3 2 1 5 5 C 1.50703 * 109.47069 * 174.99856 * 3 2 1 6 6 H 1.08001 * 119.99620 * 120.00055 * 5 3 2 7 7 C 1.37877 * 120.00144 * 299.99461 * 5 3 2 8 8 N 1.31512 * 119.99715 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 119.99961 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47364 * 60.00465 * 9 7 5 11 11 H 1.48497 * 109.47297 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47414 * 300.00606 * 9 7 5 13 13 N 1.46501 * 109.46852 * 294.99888 * 3 2 1 14 14 C 1.34769 * 120.00024 * 84.99960 * 13 3 2 15 15 O 1.21586 * 120.00395 * 359.97438 * 14 13 3 16 16 N 1.34776 * 119.99957 * 180.02562 * 14 13 3 17 17 C 1.39660 * 120.00062 * 179.97438 * 16 14 13 18 18 N 1.32931 * 125.26659 * 359.97438 * 17 16 14 19 19 C 1.32919 * 109.63493 * 180.02562 * 18 17 16 20 20 C 1.40624 * 132.76500 * 180.02562 * 19 18 17 21 21 C 1.36235 * 119.27023 * 179.97438 * 20 19 18 22 22 C 1.40225 * 119.60666 * 0.02562 * 21 20 19 23 23 C 1.35239 * 120.19954 * 359.97438 * 22 21 20 24 24 N 1.35859 * 120.58406 * 359.97438 * 23 22 21 25 25 N 1.31749 * 125.26215 * 179.97438 * 17 16 14 26 26 H 1.08995 * 109.47537 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47392 * 300.00545 * 1 2 3 28 28 H 1.09003 * 109.46759 * 60.00022 * 1 2 3 29 29 H 1.09004 * 109.47392 * 239.99455 * 2 1 3 30 30 H 1.09003 * 109.46973 * 119.99468 * 2 1 3 31 31 H 0.96998 * 119.99801 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99887 * 265.00281 * 13 3 2 33 33 H 0.96998 * 120.00459 * 0.02562 * 16 14 13 34 34 H 1.08001 * 120.36247 * 0.02562 * 20 19 18 35 35 H 1.08000 * 120.19474 * 180.29053 * 21 20 19 36 36 H 1.07996 * 119.89850 * 179.97438 * 22 21 20 37 37 H 1.07993 * 119.70969 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2281 8 7 3.4061 0.3367 2.1729 9 14 6.0048 0.8811 1.3819 10 1 6.4995 2.2813 1.3822 11 1 6.3977 0.2177 2.6511 12 1 6.5975 0.1471 0.2350 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6643 -1.3670 15 8 -0.3415 2.6319 -0.4322 16 7 0.0786 3.2664 -2.5189 17 6 -1.1830 3.8535 -2.6384 18 7 -2.1108 3.8792 -1.6869 19 6 -3.1899 4.5147 -2.1323 20 6 -4.4310 4.8168 -1.5441 21 6 -5.3628 5.4982 -2.2676 22 6 -5.0708 5.8858 -3.5832 23 6 -3.8710 5.5855 -4.1304 24 7 -2.9356 4.9072 -3.4158 25 7 -1.6376 4.4674 -3.7118 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8292 -0.0617 2.9496 32 1 2.2720 2.1230 -1.9978 33 1 0.6978 3.2914 -3.2651 34 1 -4.6428 4.5126 -0.5297 35 1 -6.3191 5.7421 -1.8290 36 1 -5.8061 6.4258 -4.1611 37 1 -3.6543 5.8883 -5.1441 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159150657.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = 109.047838 kcal Electronic energy + Delta-G solvation = -22340.450437 eV Core-core repulsion = 18928.087032 eV Total energy + Delta-G solvation = -3412.363405 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.63296 -39.62448 -37.89097 -35.37459 -34.07087 -33.50992 -32.32626 -30.95903 -30.07556 -29.78935 -26.93394 -24.13367 -23.45702 -23.05407 -22.13059 -20.46583 -19.52428 -18.61315 -17.57451 -17.42720 -16.60006 -16.34048 -15.96405 -15.42516 -15.04532 -14.79826 -14.69862 -14.04442 -13.37116 -12.87668 -12.84656 -12.72982 -12.61750 -12.00120 -11.51589 -11.40981 -11.25031 -11.22205 -10.96654 -10.81099 -10.38476 -10.31439 -10.14073 -9.98059 -9.56316 -9.22641 -9.01406 -8.70966 -8.47772 -8.26315 -7.79066 -6.10296 -4.19726 0.55654 0.86446 1.84188 2.68347 2.90727 3.27362 3.32738 3.33824 3.34486 3.89411 4.03910 4.25749 4.36143 4.52208 4.66305 4.90535 5.12528 5.13912 5.21422 5.58409 5.75339 5.87374 6.02400 6.24617 6.46278 6.54110 6.61652 6.72384 6.82176 6.95796 7.14128 7.31718 7.41658 7.47940 7.66163 7.80995 7.93709 8.19417 8.23437 8.74578 8.86546 9.27157 9.48329 10.95077 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.038286 B = 0.003289 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.165259 B = 8510.102686 C = 8830.130038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.288 3.712 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.715 5.715 14 C 0.689 3.311 15 O -0.530 6.530 16 N -0.643 5.643 17 C 0.514 3.486 18 N -0.510 5.510 19 C 0.290 3.710 20 C -0.105 4.105 21 C -0.064 4.064 22 C -0.172 4.172 23 C 0.121 3.879 24 N -0.286 5.286 25 N -0.376 5.376 26 H 0.021 0.979 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.031 0.969 30 H 0.100 0.900 31 H 0.265 0.735 32 H 0.386 0.614 33 H 0.415 0.585 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.362 9.723 -12.556 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.187 3.813 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.368 5.368 14 C 0.388 3.612 15 O -0.401 6.401 16 N -0.299 5.299 17 C 0.146 3.854 18 N -0.242 5.242 19 C 0.036 3.964 20 C -0.126 4.126 21 C -0.090 4.090 22 C -0.195 4.195 23 C -0.008 4.008 24 N -0.061 5.061 25 N -0.218 5.218 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.218 0.782 33 H 0.252 0.748 34 H 0.174 0.826 35 H 0.165 0.835 36 H 0.175 0.825 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.271 9.313 -11.635 21.338 hybrid contribution 1.458 0.081 -0.773 1.652 sum -13.813 9.395 -12.408 20.809 Atomic orbital electron populations 1.21816 0.98164 0.97917 1.01414 1.21967 0.92747 0.99779 1.02256 1.18758 0.94010 0.88894 0.79675 0.93075 1.21181 0.90572 1.39225 1.06376 0.92081 1.24869 0.98609 0.94800 0.95345 1.69887 1.35216 1.37410 1.09326 0.86496 0.84794 0.78289 0.77430 1.20210 1.21135 1.20182 1.45812 1.12787 1.58730 1.19482 1.16064 0.84144 0.79291 0.81727 1.91038 1.50878 1.61645 1.36534 1.42110 1.11720 1.58186 1.17910 1.20058 0.87620 0.90539 0.87191 1.71212 0.99156 1.25533 1.28337 1.22010 0.96182 0.94827 0.83397 1.20350 0.88903 1.01339 1.02038 1.21188 0.99412 0.94831 0.93557 1.20858 0.96231 1.05412 0.96991 1.21487 0.87182 0.93963 0.98212 1.47514 1.10891 1.35997 1.11716 1.78658 0.91720 1.30894 1.20492 0.95999 0.93016 0.94344 0.95050 0.88197 0.92466 0.78188 0.74816 0.82556 0.83455 0.82535 0.81519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.15 0.32 -2.86 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.32 16 3 C 0.29 7.32 2.24 -69.08 -0.15 7.17 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.12 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.72 -15.12 5.03 -59.81 -0.30 -15.42 16 14 C 0.69 14.77 7.10 -86.93 -0.62 14.15 16 15 O -0.53 -13.38 12.12 5.29 0.06 -13.32 16 16 N -0.64 -11.38 5.43 -17.31 -0.09 -11.47 16 17 C 0.51 9.60 8.77 -321.34 -2.82 6.78 16 18 N -0.51 -10.13 9.39 -13.12 -0.12 -10.25 16 19 C 0.29 4.50 7.87 -156.30 -1.23 3.27 16 20 C -0.10 -1.13 10.11 -39.40 -0.40 -1.53 16 21 C -0.06 -0.43 10.07 -39.56 -0.40 -0.83 16 22 C -0.17 -1.02 9.99 -39.90 -0.40 -1.42 16 23 C 0.12 1.05 11.20 -16.84 -0.19 0.86 16 24 N -0.29 -3.97 3.89 -12.35 -0.05 -4.02 16 25 N -0.38 -6.18 12.80 29.96 0.38 -5.79 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.29 7.84 -51.93 -0.41 0.88 16 28 H 0.04 0.90 5.64 -51.93 -0.29 0.60 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 31 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 32 H 0.39 6.92 8.55 -40.82 -0.35 6.57 16 33 H 0.42 5.72 8.84 -40.82 -0.36 5.36 16 34 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.16 0.34 8.06 -52.49 -0.42 -0.08 16 37 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 315.12 15.07 4.75 4.75 Total: -1.00 -35.15 315.12 -10.38 -45.53 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.19 Total: 8.93 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: -6.43 Total: 9.56 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: 0.44 Total: -71.07 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.06 Total: -13.32 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.15 -10.38 -45.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159150657.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.582 kcal (2) G-P(sol) polarization free energy of solvation -35.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds