Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47513 * 2 1 4 4 H 1.08998 * 109.47130 * 54.99642 * 3 2 1 5 5 C 1.50703 * 109.47069 * 174.99856 * 3 2 1 6 6 H 1.08001 * 119.99620 * 120.00055 * 5 3 2 7 7 C 1.37877 * 120.00144 * 299.99461 * 5 3 2 8 8 N 1.31512 * 119.99715 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 119.99961 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47364 * 60.00465 * 9 7 5 11 11 H 1.48497 * 109.47297 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47414 * 300.00606 * 9 7 5 13 13 N 1.46501 * 109.46852 * 294.99888 * 3 2 1 14 14 C 1.34769 * 120.00024 * 84.99960 * 13 3 2 15 15 O 1.21586 * 120.00395 * 359.97438 * 14 13 3 16 16 N 1.34776 * 119.99957 * 180.02562 * 14 13 3 17 17 C 1.39660 * 120.00062 * 179.97438 * 16 14 13 18 18 N 1.32931 * 125.26659 * 359.97438 * 17 16 14 19 19 C 1.32919 * 109.63493 * 180.02562 * 18 17 16 20 20 C 1.40624 * 132.76500 * 180.02562 * 19 18 17 21 21 C 1.36235 * 119.27023 * 179.97438 * 20 19 18 22 22 C 1.40225 * 119.60666 * 0.02562 * 21 20 19 23 23 C 1.35239 * 120.19954 * 359.97438 * 22 21 20 24 24 N 1.35859 * 120.58406 * 359.97438 * 23 22 21 25 25 N 1.31749 * 125.26215 * 179.97438 * 17 16 14 26 26 H 1.08995 * 109.47537 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47392 * 300.00545 * 1 2 3 28 28 H 1.09003 * 109.46759 * 60.00022 * 1 2 3 29 29 H 1.09004 * 109.47392 * 239.99455 * 2 1 3 30 30 H 1.09003 * 109.46973 * 119.99468 * 2 1 3 31 31 H 0.96998 * 119.99801 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99887 * 265.00281 * 13 3 2 33 33 H 0.96998 * 120.00459 * 0.02562 * 16 14 13 34 34 H 1.08001 * 120.36247 * 0.02562 * 20 19 18 35 35 H 1.08000 * 120.19474 * 180.29053 * 21 20 19 36 36 H 1.07996 * 119.89850 * 179.97438 * 22 21 20 37 37 H 1.07993 * 119.70969 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2281 8 7 3.4061 0.3367 2.1729 9 14 6.0048 0.8811 1.3819 10 1 6.4995 2.2813 1.3822 11 1 6.3977 0.2177 2.6511 12 1 6.5975 0.1471 0.2350 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6643 -1.3670 15 8 -0.3415 2.6319 -0.4322 16 7 0.0786 3.2664 -2.5189 17 6 -1.1830 3.8535 -2.6384 18 7 -2.1108 3.8792 -1.6869 19 6 -3.1899 4.5147 -2.1323 20 6 -4.4310 4.8168 -1.5441 21 6 -5.3628 5.4982 -2.2676 22 6 -5.0708 5.8858 -3.5832 23 6 -3.8710 5.5855 -4.1304 24 7 -2.9356 4.9072 -3.4158 25 7 -1.6376 4.4674 -3.7118 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8292 -0.0617 2.9496 32 1 2.2720 2.1230 -1.9978 33 1 0.6978 3.2914 -3.2651 34 1 -4.6428 4.5126 -0.5297 35 1 -6.3191 5.7421 -1.8290 36 1 -5.8061 6.4258 -4.1611 37 1 -3.6543 5.8883 -5.1441 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159150657.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = 85.774741 kcal Electronic energy + Delta-G solvation = -22341.459635 eV Core-core repulsion = 18928.087032 eV Total energy + Delta-G solvation = -3413.372603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.68401 -41.23259 -38.91103 -37.14471 -35.62394 -34.52961 -34.22115 -32.73305 -31.26423 -30.71389 -28.91011 -25.43047 -24.73409 -24.28371 -23.51152 -21.98729 -21.39885 -20.13831 -18.87402 -18.55772 -17.75296 -17.53311 -17.46869 -16.95488 -16.44907 -16.19061 -15.88990 -15.49770 -15.13189 -14.55974 -14.35091 -13.75764 -13.64655 -13.35289 -13.33663 -13.17309 -12.89362 -12.64461 -12.26069 -12.21662 -12.19898 -12.07811 -11.65094 -11.44814 -11.41790 -11.06445 -10.77542 -10.52196 -9.97200 -9.63346 -9.19085 -8.14806 -6.32271 -0.18167 -0.05764 0.75475 1.46359 1.48602 1.51595 1.56174 1.69015 2.34013 2.42522 2.54935 2.90256 3.14119 3.19806 3.63048 3.89950 4.10755 4.31818 4.45575 4.49470 4.56505 4.59899 4.75191 4.98732 5.05351 5.12976 5.21120 5.25006 5.42203 5.45685 5.49514 5.56975 5.60819 5.63592 5.80853 5.88441 6.08441 6.16505 6.74034 6.88781 7.26089 7.35657 7.65498 8.90821 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.038286 B = 0.003289 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.165259 B = 8510.102686 C = 8830.130038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.298 3.702 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.973 3.027 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.709 5.709 14 C 0.693 3.307 15 O -0.572 6.572 16 N -0.630 5.630 17 C 0.489 3.511 18 N -0.578 5.578 19 C 0.265 3.735 20 C -0.137 4.137 21 C -0.028 4.028 22 C -0.138 4.138 23 C 0.095 3.905 24 N -0.287 5.287 25 N -0.385 5.385 26 H 0.044 0.956 27 H 0.025 0.975 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.266 0.734 32 H 0.403 0.597 33 H 0.432 0.568 34 H 0.157 0.843 35 H 0.196 0.804 36 H 0.213 0.787 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.115 11.331 -14.950 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.195 3.805 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.797 3.203 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.188 1.188 13 N -0.363 5.363 14 C 0.392 3.608 15 O -0.446 6.446 16 N -0.288 5.288 17 C 0.121 3.879 18 N -0.313 5.313 19 C 0.014 3.986 20 C -0.159 4.159 21 C -0.054 4.054 22 C -0.160 4.160 23 C -0.033 4.033 24 N -0.062 5.062 25 N -0.228 5.228 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.238 0.762 33 H 0.271 0.729 34 H 0.175 0.825 35 H 0.214 0.786 36 H 0.230 0.770 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -17.058 10.968 -14.121 24.712 hybrid contribution 1.650 -0.220 -0.130 1.669 sum -15.408 10.748 -14.251 23.581 Atomic orbital electron populations 1.21625 0.97260 0.98824 0.99957 1.21812 0.93388 0.99188 1.01514 1.18333 0.93651 0.88787 0.79737 0.98258 1.21521 0.91042 1.39244 1.06934 0.90805 1.25767 1.03410 0.94301 0.94911 1.70046 1.37192 1.38137 1.09847 0.85388 0.78888 0.78388 0.77586 1.19777 1.21165 1.18827 1.45410 1.13306 1.58690 1.18865 1.16055 0.83571 0.79030 0.82153 1.91006 1.52053 1.63101 1.38451 1.41597 1.12321 1.57684 1.17175 1.20173 0.87729 0.91989 0.88037 1.71035 1.01127 1.28600 1.30500 1.22452 0.96671 0.95159 0.84326 1.20674 0.88434 1.03823 1.03011 1.21854 0.99642 0.90595 0.93273 1.21647 0.95484 1.02381 0.96521 1.22463 0.87251 0.93897 0.99698 1.47652 1.10586 1.36148 1.11807 1.78473 0.93372 1.31069 1.19852 0.93688 0.95616 0.94642 0.93841 0.90583 0.92509 0.76156 0.72876 0.82532 0.78647 0.77018 0.78509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.51 71.98 0.61 -5.19 16 2 C -0.12 -6.13 5.45 30.59 0.17 -5.96 16 3 C 0.30 15.81 2.24 44.25 0.10 15.91 16 4 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 5 C -0.55 -29.44 8.73 25.60 0.22 -29.22 16 6 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.91 -52.91 11.29 21.45 0.24 -52.67 16 9 Si 0.97 42.47 29.54 68.60 2.03 44.49 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 13 N -0.71 -31.02 5.03 -461.42 -2.32 -33.34 16 14 C 0.69 31.31 7.10 179.06 1.27 32.59 16 15 O -0.57 -30.92 12.12 -3.99 -0.05 -30.97 16 16 N -0.63 -23.40 5.43 -326.95 -1.78 -25.18 16 17 C 0.49 19.22 8.77 260.98 2.29 21.51 16 18 N -0.58 -24.42 9.39 -195.43 -1.84 -26.25 16 19 C 0.27 8.40 7.87 134.08 1.06 9.46 16 20 C -0.14 -2.82 10.11 22.39 0.23 -2.60 16 21 C -0.03 -0.25 10.07 22.29 0.22 -0.02 16 22 C -0.14 -0.86 9.99 22.06 0.22 -0.64 16 23 C 0.09 1.33 11.20 83.38 0.93 2.26 16 24 N -0.29 -7.82 3.89 -192.97 -0.75 -8.57 16 25 N -0.39 -12.92 12.80 -59.11 -0.76 -13.68 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.02 1.34 7.84 -2.38 -0.02 1.32 16 28 H 0.03 1.72 5.64 -2.39 -0.01 1.71 16 29 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.08 4.29 5.95 -2.39 -0.01 4.27 16 31 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.40 14.62 8.55 -92.71 -0.79 13.83 16 33 H 0.43 12.30 8.84 -92.71 -0.82 11.48 16 34 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 35 H 0.20 -0.07 8.06 -2.91 -0.02 -0.09 16 36 H 0.21 -0.87 8.06 -2.91 -0.02 -0.89 16 37 H 0.20 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -84.18 315.12 2.07 -82.11 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.48 Total: 24.61 kcal Atomic # 6 Polarization: 31.67 SS G_CDS: 7.77 Total: 39.44 kcal Atomic # 7 Polarization: -152.49 SS G_CDS: -7.20 Total: -159.69 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.05 Total: -30.97 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -84.18 2.07 -82.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159150657.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.887 kcal (2) G-P(sol) polarization free energy of solvation -84.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds