Wall clock time and date at job start Tue Mar 31 2020 06:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35333 * 126.14435 * 2 1 4 4 C 1.50696 * 126.03426 * 0.07182 * 3 2 1 5 5 H 1.08998 * 109.47107 * 40.29551 * 4 3 2 6 6 C 1.52995 * 109.47214 * 280.29247 * 4 3 2 7 7 N 1.46500 * 109.47234 * 160.28986 * 4 3 2 8 8 C 1.36935 * 120.00230 * 205.00229 * 7 4 3 9 9 H 1.07999 * 120.00065 * 0.02562 * 8 7 4 10 10 C 1.38815 * 119.99950 * 180.02562 * 8 7 4 11 11 N 1.31617 * 120.00095 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00049 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46919 * 89.99867 * 12 10 8 14 14 H 1.48496 * 109.47197 * 210.00081 * 12 10 8 15 15 H 1.48494 * 109.47232 * 330.00103 * 12 10 8 16 16 C 1.39909 * 107.92716 * 180.29865 * 3 2 1 17 17 N 1.30881 * 108.24685 * 359.73724 * 16 3 2 18 18 N 1.35214 * 126.14230 * 179.85225 * 2 1 3 19 19 C 1.40254 * 126.05117 * 359.96293 * 18 2 1 20 20 C 1.38826 * 120.03691 * 144.71247 * 19 18 2 21 21 C 1.38109 * 119.95440 * 179.97438 * 20 19 18 22 22 C 1.38482 * 120.04219 * 0.28157 * 21 20 19 23 23 F 1.35098 * 119.96230 * 179.70013 * 22 21 20 24 24 C 1.38493 * 120.08006 * 359.44530 * 22 21 20 25 25 C 1.38103 * 120.04125 * 0.55174 * 24 22 21 26 26 H 1.09008 * 109.47449 * 270.17150 * 1 2 3 27 27 H 1.08998 * 109.47316 * 30.17169 * 1 2 3 28 28 H 1.09000 * 109.47305 * 150.17204 * 1 2 3 29 29 H 1.09002 * 109.47291 * 59.99740 * 6 4 3 30 30 H 1.09000 * 109.47409 * 180.02562 * 6 4 3 31 31 H 1.09004 * 109.46849 * 299.99660 * 6 4 3 32 32 H 0.97003 * 119.99620 * 25.00040 * 7 4 3 33 33 H 0.96994 * 120.00411 * 179.97438 * 11 10 8 34 34 H 1.08005 * 125.87263 * 179.71967 * 16 3 2 35 35 H 1.08000 * 120.02329 * 359.95962 * 20 19 18 36 36 H 1.08002 * 119.97522 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.97335 * 180.27459 * 24 22 21 38 38 H 1.07995 * 120.01879 * 179.74544 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3052 1.0929 0.0000 4 6 1.8440 2.5275 0.0015 5 1 0.9873 2.6330 0.6671 6 6 1.4411 2.9352 -1.4170 7 7 2.9329 3.3900 0.4669 8 6 2.6501 4.6026 1.0368 9 1 1.6242 4.9229 1.1436 10 6 3.6819 5.4201 1.4773 11 7 3.4101 6.5858 2.0246 12 14 5.4562 4.8657 1.2932 13 1 5.9848 5.3245 -0.0166 14 1 6.2730 5.4482 2.3880 15 1 5.5215 3.3838 1.3616 16 6 3.6342 0.6555 -0.0069 17 7 3.6348 -0.6533 -0.0053 18 7 2.3045 -1.0919 0.0028 19 6 1.8756 -2.4273 0.0070 20 6 2.5967 -3.3909 -0.6848 21 6 2.1731 -4.7054 -0.6791 22 6 1.0266 -5.0614 0.0113 23 9 0.6104 -6.3467 0.0107 24 6 0.3091 -4.1024 0.7066 25 6 0.7296 -2.7869 0.7033 26 1 -0.3634 0.0031 1.0277 27 1 -0.3634 0.8884 -0.5165 28 1 -0.3634 -0.8915 -0.5112 29 1 0.6309 2.2935 -1.7633 30 1 1.1079 3.9730 -1.4160 31 1 2.2979 2.8297 -2.0825 32 1 3.8543 3.1021 0.3713 33 1 4.1310 7.1568 2.3327 34 1 4.5089 1.2890 -0.0130 35 1 3.4882 -3.1128 -1.2273 36 1 2.7336 -5.4553 -1.2175 37 1 -0.5823 -4.3827 1.2481 38 1 0.1676 -2.0387 1.2422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183005627.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:01 Heat of formation + Delta-G solvation = 76.270233 kcal Electronic energy + Delta-G solvation = -22102.489978 eV Core-core repulsion = 18668.785267 eV Total energy + Delta-G solvation = -3433.704711 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.22905 -41.63348 -39.15367 -35.84548 -33.45331 -32.72888 -31.69131 -31.10261 -29.07757 -28.31771 -26.87422 -23.96017 -23.65939 -23.03887 -21.71303 -20.36648 -19.24959 -18.03257 -17.63887 -17.28724 -16.62221 -15.94906 -15.26106 -15.03708 -14.67715 -14.52695 -14.10431 -13.99936 -13.65616 -13.42493 -13.22145 -12.97582 -12.90153 -12.68850 -12.31943 -12.28344 -12.10574 -11.69420 -11.49667 -11.05964 -10.87017 -10.70940 -10.33696 -10.03304 -9.91648 -9.59054 -9.58599 -9.01822 -8.70240 -7.96166 -7.27378 -5.76694 -3.12014 0.48813 0.76250 1.96572 2.36472 2.94846 3.17011 3.37867 3.39905 3.46432 3.86153 4.25861 4.39673 4.58501 4.59415 4.69959 4.76943 4.98135 5.09408 5.21635 5.35962 5.41269 5.46466 5.53618 5.64378 5.69740 5.72360 5.75643 5.79659 5.91573 6.12335 6.18657 6.29645 6.32111 6.50375 6.74170 6.75610 7.01481 7.17929 7.72769 7.99793 8.42578 9.20403 9.93114 10.13039 11.41661 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.032555 B = 0.003479 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.872970 B = 8047.294018 C = 8455.790233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.076 3.924 3 C -0.203 4.203 4 C 0.250 3.750 5 H 0.062 0.938 6 C -0.159 4.159 7 N -0.745 5.745 8 C -0.241 4.241 9 H 0.092 0.908 10 C 0.005 3.995 11 N -0.934 5.934 12 Si 0.881 3.119 13 H -0.283 1.283 14 H -0.291 1.291 15 H -0.277 1.277 16 C 0.075 3.925 17 N -0.296 5.296 18 N -0.336 5.336 19 C 0.161 3.839 20 C -0.088 4.088 21 C -0.133 4.133 22 C 0.087 3.913 23 F -0.138 7.138 24 C -0.130 4.130 25 C -0.108 4.108 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.185 0.815 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 -22.401 -6.011 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.046 4.046 3 C -0.214 4.214 4 C 0.140 3.860 5 H 0.080 0.920 6 C -0.219 4.219 7 N -0.388 5.388 8 C -0.370 4.370 9 H 0.110 0.890 10 C -0.191 4.191 11 N -0.582 5.582 12 Si 0.711 3.289 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.112 4.112 17 N -0.114 5.114 18 N -0.113 5.113 19 C 0.068 3.932 20 C -0.108 4.108 21 C -0.152 4.152 22 C 0.067 3.933 23 F -0.117 7.117 24 C -0.150 4.150 25 C -0.128 4.128 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.202 0.798 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.341 -23.327 -5.903 24.884 hybrid contribution 1.008 0.276 -0.027 1.046 sum -5.332 -23.051 -5.930 24.392 Atomic orbital electron populations 1.20634 0.87242 1.04103 1.03398 1.20811 0.94505 0.86043 1.03254 1.20542 0.92154 0.96715 1.12010 1.18473 0.91424 0.82370 0.93739 0.91992 1.22386 0.99820 1.01249 0.98429 1.42745 1.02957 1.19342 1.73786 1.19054 0.95025 0.91747 1.31212 0.89043 1.24646 0.97305 0.96403 1.00715 1.69689 1.31335 1.10820 1.46357 0.86604 0.86679 0.77984 0.77588 1.20992 1.21733 1.20319 1.23860 0.98522 0.91408 0.97419 1.77467 0.95036 1.13088 1.25789 1.45639 1.04753 1.02730 1.58206 1.17467 0.95621 0.81614 0.98470 1.20881 1.00532 0.91260 0.98108 1.21035 0.96226 0.96915 1.01041 1.17711 0.95677 0.78988 1.00907 1.91510 1.89847 1.35217 1.95108 1.20971 1.01325 0.91776 1.00887 1.21001 0.96644 0.96436 0.98747 0.89976 0.88949 0.91114 0.94258 0.92010 0.93510 0.80695 0.93058 0.79827 0.83898 0.83918 0.83760 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 8.38 36.00 0.30 -0.68 16 2 C 0.08 1.10 6.76 -82.14 -0.56 0.54 16 3 C -0.20 -3.45 5.25 -105.03 -0.55 -4.00 16 4 C 0.25 4.69 2.87 -69.09 -0.20 4.49 16 5 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 6 C -0.16 -2.68 9.47 37.16 0.35 -2.33 16 7 N -0.75 -17.17 4.88 -54.56 -0.27 -17.43 16 8 C -0.24 -6.60 10.41 -15.06 -0.16 -6.76 16 9 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 10 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 11 N -0.93 -29.00 13.97 55.49 0.78 -28.22 16 12 Si 0.88 21.83 27.74 -169.99 -4.71 17.12 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.28 -6.40 6.52 56.52 0.37 -6.04 16 16 C 0.07 1.30 11.20 -17.33 -0.19 1.11 16 17 N -0.30 -4.97 12.34 30.64 0.38 -4.59 16 18 N -0.34 -4.93 3.74 -6.97 -0.03 -4.95 16 19 C 0.16 1.93 6.27 -83.57 -0.52 1.41 16 20 C -0.09 -0.93 9.76 -39.41 -0.38 -1.32 16 21 C -0.13 -1.18 10.02 -39.54 -0.40 -1.57 16 22 C 0.09 0.79 7.30 -39.40 -0.29 0.51 16 23 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 24 C -0.13 -1.08 10.02 -39.54 -0.40 -1.48 16 25 C -0.11 -1.03 8.28 -39.41 -0.33 -1.36 16 26 H 0.08 0.74 7.74 -51.92 -0.40 0.33 16 27 H 0.09 0.91 6.86 -51.93 -0.36 0.56 16 28 H 0.07 0.60 6.90 -51.93 -0.36 0.24 16 29 H 0.04 0.54 7.11 -51.93 -0.37 0.18 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.36 8.13 3.97 -40.82 -0.16 7.97 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.18 3.09 6.98 -52.48 -0.37 2.72 16 35 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.14 1.21 6.12 -52.49 -0.32 0.89 16 LS Contribution 322.73 15.07 4.86 4.86 Total: -1.00 -32.24 322.73 -6.82 -39.06 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.46 Total: 6.83 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -3.41 Total: -11.39 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.86 Total: -55.20 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.24 -6.82 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183005627.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.329 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds