Wall clock time and date at job start Tue Mar 31 2020 06:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35333 * 126.14435 * 2 1 4 4 C 1.50696 * 126.03426 * 0.07182 * 3 2 1 5 5 H 1.08998 * 109.47107 * 40.29551 * 4 3 2 6 6 C 1.52995 * 109.47214 * 280.29247 * 4 3 2 7 7 N 1.46500 * 109.47234 * 160.28986 * 4 3 2 8 8 C 1.36935 * 120.00230 * 205.00229 * 7 4 3 9 9 H 1.07999 * 120.00065 * 0.02562 * 8 7 4 10 10 C 1.38815 * 119.99950 * 180.02562 * 8 7 4 11 11 N 1.31617 * 120.00095 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00049 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46919 * 89.99867 * 12 10 8 14 14 H 1.48496 * 109.47197 * 210.00081 * 12 10 8 15 15 H 1.48494 * 109.47232 * 330.00103 * 12 10 8 16 16 C 1.39909 * 107.92716 * 180.29865 * 3 2 1 17 17 N 1.30881 * 108.24685 * 359.73724 * 16 3 2 18 18 N 1.35214 * 126.14230 * 179.85225 * 2 1 3 19 19 C 1.40254 * 126.05117 * 359.96293 * 18 2 1 20 20 C 1.38826 * 120.03691 * 144.71247 * 19 18 2 21 21 C 1.38109 * 119.95440 * 179.97438 * 20 19 18 22 22 C 1.38482 * 120.04219 * 0.28157 * 21 20 19 23 23 F 1.35098 * 119.96230 * 179.70013 * 22 21 20 24 24 C 1.38493 * 120.08006 * 359.44530 * 22 21 20 25 25 C 1.38103 * 120.04125 * 0.55174 * 24 22 21 26 26 H 1.09008 * 109.47449 * 270.17150 * 1 2 3 27 27 H 1.08998 * 109.47316 * 30.17169 * 1 2 3 28 28 H 1.09000 * 109.47305 * 150.17204 * 1 2 3 29 29 H 1.09002 * 109.47291 * 59.99740 * 6 4 3 30 30 H 1.09000 * 109.47409 * 180.02562 * 6 4 3 31 31 H 1.09004 * 109.46849 * 299.99660 * 6 4 3 32 32 H 0.97003 * 119.99620 * 25.00040 * 7 4 3 33 33 H 0.96994 * 120.00411 * 179.97438 * 11 10 8 34 34 H 1.08005 * 125.87263 * 179.71967 * 16 3 2 35 35 H 1.08000 * 120.02329 * 359.95962 * 20 19 18 36 36 H 1.08002 * 119.97522 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.97335 * 180.27459 * 24 22 21 38 38 H 1.07995 * 120.01879 * 179.74544 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3052 1.0929 0.0000 4 6 1.8440 2.5275 0.0015 5 1 0.9873 2.6330 0.6671 6 6 1.4411 2.9352 -1.4170 7 7 2.9329 3.3900 0.4669 8 6 2.6501 4.6026 1.0368 9 1 1.6242 4.9229 1.1436 10 6 3.6819 5.4201 1.4773 11 7 3.4101 6.5858 2.0246 12 14 5.4562 4.8657 1.2932 13 1 5.9848 5.3245 -0.0166 14 1 6.2730 5.4482 2.3880 15 1 5.5215 3.3838 1.3616 16 6 3.6342 0.6555 -0.0069 17 7 3.6348 -0.6533 -0.0053 18 7 2.3045 -1.0919 0.0028 19 6 1.8756 -2.4273 0.0070 20 6 2.5967 -3.3909 -0.6848 21 6 2.1731 -4.7054 -0.6791 22 6 1.0266 -5.0614 0.0113 23 9 0.6104 -6.3467 0.0107 24 6 0.3091 -4.1024 0.7066 25 6 0.7296 -2.7869 0.7033 26 1 -0.3634 0.0031 1.0277 27 1 -0.3634 0.8884 -0.5165 28 1 -0.3634 -0.8915 -0.5112 29 1 0.6309 2.2935 -1.7633 30 1 1.1079 3.9730 -1.4160 31 1 2.2979 2.8297 -2.0825 32 1 3.8543 3.1021 0.3713 33 1 4.1310 7.1568 2.3327 34 1 4.5089 1.2890 -0.0130 35 1 3.4882 -3.1128 -1.2273 36 1 2.7336 -5.4553 -1.2175 37 1 -0.5823 -4.3827 1.2481 38 1 0.1676 -2.0387 1.2422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183005627.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:01 Heat of formation + Delta-G solvation = 57.281546 kcal Electronic energy + Delta-G solvation = -22103.313389 eV Core-core repulsion = 18668.785267 eV Total energy + Delta-G solvation = -3434.528122 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.95809 -42.75390 -39.97607 -37.46686 -34.55830 -34.30488 -32.92368 -32.16671 -30.60983 -29.35344 -27.97352 -25.66754 -24.47705 -24.10747 -23.11088 -21.44486 -20.67644 -19.47285 -18.77751 -18.36964 -17.43843 -16.69254 -16.54188 -16.31179 -16.19472 -15.54561 -15.36762 -15.11432 -14.74255 -14.53077 -14.29820 -14.13801 -14.11249 -13.75513 -13.67921 -13.38161 -13.34550 -13.06615 -12.85771 -12.52522 -12.36402 -12.06559 -11.98360 -11.75489 -11.44846 -11.06792 -10.92164 -10.28940 -9.76538 -9.31330 -9.01553 -7.97938 -5.29999 -0.34888 0.06183 0.90828 1.34401 1.39788 1.42043 1.48620 1.68382 2.40006 2.51644 3.14297 3.34686 3.42032 3.59012 3.69982 3.73951 3.76234 4.04757 4.09549 4.21808 4.35196 4.48429 4.57063 4.66743 4.72030 4.79367 4.83942 4.93138 4.96033 4.97937 5.09172 5.15557 5.17773 5.30351 5.46937 5.57930 5.65567 5.83520 6.16907 6.27057 6.55486 7.12632 7.89643 8.08108 9.23635 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.032555 B = 0.003479 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.872970 B = 8047.294018 C = 8455.790233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.095 3.905 3 C -0.234 4.234 4 C 0.251 3.749 5 H 0.058 0.942 6 C -0.149 4.149 7 N -0.750 5.750 8 C -0.220 4.220 9 H 0.064 0.936 10 C -0.064 4.064 11 N -0.985 5.985 12 Si 0.944 3.056 13 H -0.278 1.278 14 H -0.299 1.299 15 H -0.253 1.253 16 C 0.057 3.943 17 N -0.316 5.316 18 N -0.330 5.330 19 C 0.126 3.874 20 C -0.094 4.094 21 C -0.129 4.129 22 C 0.087 3.913 23 F -0.139 7.139 24 C -0.121 4.121 25 C -0.101 4.101 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.363 0.637 33 H 0.256 0.744 34 H 0.180 0.820 35 H 0.136 0.864 36 H 0.163 0.837 37 H 0.173 0.827 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.011 -25.572 -6.561 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.030 4.030 3 C -0.245 4.245 4 C 0.142 3.858 5 H 0.075 0.925 6 C -0.209 4.209 7 N -0.393 5.393 8 C -0.351 4.351 9 H 0.082 0.918 10 C -0.255 4.255 11 N -0.636 5.636 12 Si 0.772 3.228 13 H -0.204 1.204 14 H -0.226 1.226 15 H -0.178 1.178 16 C -0.129 4.129 17 N -0.135 5.135 18 N -0.107 5.107 19 C 0.035 3.965 20 C -0.114 4.114 21 C -0.148 4.148 22 C 0.067 3.933 23 F -0.118 7.118 24 C -0.140 4.140 25 C -0.121 4.121 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.196 0.804 33 H 0.065 0.935 34 H 0.197 0.803 35 H 0.154 0.846 36 H 0.181 0.819 37 H 0.191 0.809 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.448 -26.581 -6.487 28.357 hybrid contribution 1.171 1.039 0.120 1.570 sum -6.277 -25.543 -6.368 27.062 Atomic orbital electron populations 1.20846 0.84179 1.05528 1.05017 1.21309 0.96169 0.85154 1.00329 1.20284 0.92593 0.96148 1.15510 1.18543 0.89929 0.83040 0.94259 0.92456 1.22244 1.00783 1.00687 0.97175 1.42786 1.04413 1.18516 1.73608 1.19040 0.93722 0.92940 1.29352 0.91780 1.25391 1.01754 0.96704 1.01635 1.69860 1.32440 1.12497 1.48804 0.85563 0.81152 0.78844 0.77214 1.20432 1.22570 1.17801 1.23855 0.98759 0.91814 0.98477 1.77393 0.96750 1.12740 1.26623 1.45796 1.04046 1.03890 1.57016 1.17848 0.97280 0.80624 1.00725 1.20897 1.00386 0.91826 0.98274 1.21203 0.96275 0.96542 1.00744 1.17886 0.95676 0.79080 1.00678 1.91517 1.89818 1.35363 1.95075 1.21251 1.01793 0.90851 1.00086 1.21159 0.95633 0.97314 0.98036 0.88104 0.88393 0.88820 0.90799 0.93966 0.93890 0.80371 0.93508 0.80297 0.84579 0.81932 0.80944 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 8.38 71.24 0.60 -1.08 16 2 C 0.09 2.53 6.76 41.37 0.28 2.81 16 3 C -0.23 -7.71 5.25 -20.13 -0.11 -7.81 16 4 C 0.25 9.27 2.87 44.24 0.13 9.39 16 5 H 0.06 2.15 8.07 -2.39 -0.02 2.13 16 6 C -0.15 -4.89 9.47 71.98 0.68 -4.21 16 7 N -0.75 -34.57 4.88 -326.52 -1.59 -36.16 16 8 C -0.22 -12.29 10.41 84.03 0.87 -11.41 16 9 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16 10 C -0.06 -3.74 5.50 84.86 0.47 -3.28 16 11 N -0.98 -63.06 13.97 21.65 0.30 -62.76 16 12 Si 0.94 45.72 27.74 68.60 1.90 47.62 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 15 H -0.25 -11.11 6.52 99.48 0.65 -10.46 16 16 C 0.06 1.96 11.20 85.24 0.95 2.91 16 17 N -0.32 -10.43 12.34 -56.97 -0.70 -11.13 16 18 N -0.33 -9.13 3.74 -175.96 -0.66 -9.79 16 19 C 0.13 2.75 6.27 38.07 0.24 2.99 16 20 C -0.09 -1.83 9.76 22.38 0.22 -1.61 16 21 C -0.13 -1.94 10.02 22.30 0.22 -1.71 16 22 C 0.09 1.29 7.30 22.39 0.16 1.45 16 23 F -0.14 -2.21 17.27 44.97 0.78 -1.43 16 24 C -0.12 -1.53 10.02 22.30 0.22 -1.30 16 25 C -0.10 -1.59 8.28 22.38 0.19 -1.41 16 26 H 0.10 1.41 7.74 -2.38 -0.02 1.40 16 27 H 0.10 1.60 6.86 -2.39 -0.02 1.59 16 28 H 0.09 1.20 6.90 -2.39 -0.02 1.18 16 29 H 0.07 1.89 7.11 -2.39 -0.02 1.87 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.36 16.24 3.97 -92.71 -0.37 15.88 16 33 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 34 H 0.18 6.05 6.98 -2.91 -0.02 6.03 16 35 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 36 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 37 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 38 H 0.16 2.00 6.12 -2.91 -0.02 1.99 16 Total: -1.00 -71.30 322.73 5.82 -65.47 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.67 Total: 22.45 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 5.13 Total: -14.27 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -2.65 Total: -119.85 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.62 kcal Total: -71.30 5.82 -65.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183005627.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.756 kcal (2) G-P(sol) polarization free energy of solvation -71.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds