Wall clock time and date at job start Tue Mar 31 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31514 * 120.00035 * 179.72339 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 359.72191 * 7 5 3 10 10 H 1.48500 * 109.46986 * 90.00256 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00273 * 9 7 5 12 12 H 1.48499 * 109.47352 * 330.00102 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 C 1.50696 * 109.46967 * 179.97438 * 16 14 13 18 18 N 1.32614 * 125.19245 * 90.02230 * 17 16 14 19 19 C 1.32821 * 109.76033 * 179.97438 * 18 17 16 20 20 N 1.33818 * 132.50242 * 180.02562 * 19 18 17 21 21 C 1.31354 * 120.86617 * 179.97438 * 20 19 18 22 22 C 1.40038 * 120.31168 * 359.97438 * 21 20 19 23 23 C 1.35783 * 119.24002 * 0.02562 * 22 21 20 24 24 N 1.35973 * 119.02255 * 0.02562 * 23 22 21 25 25 N 1.31189 * 125.18393 * 269.71579 * 17 16 14 26 26 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 27 27 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 29 29 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 30 30 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 31 31 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 32 32 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 33 33 H 1.09003 * 109.46719 * 299.99416 * 16 14 13 34 34 H 1.08991 * 109.47126 * 59.99074 * 16 14 13 35 35 H 1.08001 * 119.84638 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.38502 * 180.02562 * 22 21 20 37 37 H 1.08002 * 120.49168 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 5.4542 0.8753 1.3334 9 14 3.0961 0.1164 2.5740 10 1 2.8687 -1.3195 2.2711 11 1 3.7966 0.2424 3.8773 12 1 1.7904 0.8204 2.6439 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 6 -1.3617 3.8852 -2.5234 18 7 -1.6689 5.1007 -2.0913 19 6 -2.9875 5.2602 -2.0993 20 7 -3.7760 6.2872 -1.7615 21 6 -5.0825 6.1952 -1.8619 22 6 -5.6742 5.0144 -2.3272 23 6 -4.8821 3.9669 -2.6723 24 7 -3.5332 4.0934 -2.5559 25 7 -2.4600 3.2339 -2.8243 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 5.8773 0.4775 2.1104 32 1 2.2719 2.1232 -1.9978 33 1 0.7275 4.1530 -2.8679 34 1 0.0672 2.6131 -3.4684 35 1 -5.7033 7.0342 -1.5843 36 1 -6.7482 4.9375 -2.4106 37 1 -5.3169 3.0468 -3.0340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183801507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:01 Heat of formation + Delta-G solvation = 106.980901 kcal Electronic energy + Delta-G solvation = -22389.133415 eV Core-core repulsion = 18976.680380 eV Total energy + Delta-G solvation = -3412.453034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.04502 -39.52386 -38.72460 -35.38812 -34.74904 -32.68143 -32.27243 -31.48295 -30.85154 -29.35459 -27.34687 -24.94310 -24.02436 -22.74983 -21.85879 -20.45431 -19.59163 -18.60660 -18.30330 -17.44646 -16.66972 -16.52510 -15.81933 -15.72404 -15.04353 -14.83073 -14.32733 -13.72717 -13.58346 -13.32509 -13.14563 -12.83138 -12.75045 -12.64921 -12.16821 -12.07956 -11.80472 -11.59123 -11.06060 -10.88374 -10.61747 -10.29324 -10.20786 -9.91369 -9.86734 -9.55814 -9.22036 -9.12410 -8.98610 -8.73801 -8.07404 -6.19471 -4.21709 0.15972 0.49719 1.69873 2.35474 3.03104 3.19347 3.23186 3.25153 3.36976 3.42791 3.67549 3.96837 4.02268 4.33253 4.34355 4.51796 4.75183 4.98181 5.14056 5.30495 5.34887 5.37189 5.56585 5.94320 5.98055 6.03563 6.05830 6.10094 6.19977 6.67130 6.70997 6.85527 6.97341 7.19890 7.27164 7.30888 7.52597 7.81178 8.14619 8.52047 8.77102 8.92189 9.41460 10.92577 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.032177 B = 0.003558 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.989160 B = 7867.000532 C = 8021.896491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.243 3.757 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.082 0.918 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.697 5.697 14 C 0.513 3.487 15 O -0.541 6.541 16 C -0.058 4.058 17 C 0.310 3.690 18 N -0.509 5.509 19 C 0.440 3.560 20 N -0.453 5.453 21 C 0.202 3.798 22 C -0.230 4.230 23 C 0.175 3.825 24 N -0.327 5.327 25 N -0.322 5.322 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.267 0.733 32 H 0.397 0.603 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.189 0.811 36 H 0.173 0.827 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.259 6.232 -11.044 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.140 3.860 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.100 0.900 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.345 5.345 14 C 0.296 3.704 15 O -0.419 6.419 16 C -0.101 4.101 17 C 0.028 3.972 18 N -0.240 5.240 19 C 0.079 3.921 20 N -0.167 5.167 21 C 0.015 3.985 22 C -0.255 4.255 23 C 0.037 3.963 24 N -0.106 5.106 25 N -0.154 5.154 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.230 0.770 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.206 0.794 36 H 0.190 0.810 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -21.589 6.316 -10.135 24.672 hybrid contribution -0.814 -1.141 0.204 1.416 sum -22.403 5.176 -9.931 25.046 Atomic orbital electron populations 1.21869 0.97007 0.98953 1.02215 1.22288 0.94258 0.99972 1.01159 1.19164 0.95666 0.88437 0.82726 0.93293 1.21047 0.88523 1.39851 1.07797 0.90045 1.24825 0.94848 0.95138 0.97656 1.69865 1.08648 1.44533 1.29830 0.86917 0.81003 0.79903 0.81009 1.20239 1.22133 1.18524 1.46069 1.14430 1.55846 1.18196 1.19833 0.82986 0.79349 0.88278 1.90713 1.51475 1.59415 1.40287 1.20161 0.88048 1.02329 0.99573 1.23611 0.95403 0.87196 0.90957 1.70706 1.07152 1.19191 1.26933 1.22740 0.90735 0.83463 0.95126 1.67995 1.05405 1.24930 1.18359 1.23554 0.89424 0.97187 0.88312 1.21914 1.02547 0.93886 1.07180 1.22150 0.79317 1.01219 0.93659 1.48800 1.06902 1.13605 1.41293 1.78550 0.92281 1.13031 1.31492 0.92923 0.95024 0.93069 0.92184 0.92767 0.92286 0.76955 0.85551 0.86174 0.79406 0.80961 0.80165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.66 16 2 C -0.14 -3.10 5.11 -26.73 -0.14 -3.24 16 3 C 0.24 5.82 1.83 -69.08 -0.13 5.69 16 4 H 0.05 1.31 6.62 -51.93 -0.34 0.97 16 5 C -0.53 -14.45 9.31 -34.44 -0.32 -14.77 16 6 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 7 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 8 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 9 Si 0.88 22.07 24.42 -169.99 -4.15 17.91 16 10 H -0.28 -6.66 6.82 56.52 0.39 -6.27 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.26 -6.54 6.53 56.52 0.37 -6.17 16 13 N -0.70 -13.65 5.02 -54.93 -0.28 -13.92 16 14 C 0.51 9.81 6.39 -10.99 -0.07 9.74 16 15 O -0.54 -12.52 13.17 5.55 0.07 -12.44 16 16 C -0.06 -0.85 6.33 -29.04 -0.18 -1.04 16 17 C 0.31 5.28 6.59 -157.00 -1.03 4.25 16 18 N -0.51 -9.36 11.25 -11.80 -0.13 -9.49 16 19 C 0.44 7.01 8.99 -323.14 -2.91 4.11 16 20 N -0.45 -5.85 10.48 -13.82 -0.14 -6.00 16 21 C 0.20 1.38 11.27 -17.08 -0.19 1.19 16 22 C -0.23 -1.12 10.06 -39.79 -0.40 -1.52 16 23 C 0.17 1.40 11.32 -16.60 -0.19 1.22 16 24 N -0.33 -4.54 3.91 -13.84 -0.05 -4.59 16 25 N -0.32 -5.25 12.78 32.39 0.41 -4.83 16 26 H 0.05 1.08 5.64 -51.93 -0.29 0.78 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.05 1.28 3.23 -51.93 -0.17 1.12 16 31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.40 6.61 8.54 -40.82 -0.35 6.26 16 33 H 0.13 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.19 0.40 8.06 -52.49 -0.42 -0.02 16 36 H 0.17 0.04 8.06 -52.48 -0.42 -0.38 16 37 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 311.53 15.07 4.69 4.69 Total: -1.00 -38.54 311.53 -8.27 -46.81 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.12 Total: 2.57 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -5.34 Total: 5.09 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: 0.58 Total: -64.63 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.07 Total: -12.44 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.15 Total: 17.91 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -38.54 -8.27 -46.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183801507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.790 kcal (2) G-P(sol) polarization free energy of solvation -38.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds