Wall clock time and date at job start Tue Mar 31 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31514 * 120.00035 * 179.72339 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 359.72191 * 7 5 3 10 10 H 1.48500 * 109.46986 * 90.00256 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00273 * 9 7 5 12 12 H 1.48499 * 109.47352 * 330.00102 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 C 1.50696 * 109.46967 * 179.97438 * 16 14 13 18 18 N 1.32614 * 125.19245 * 90.02230 * 17 16 14 19 19 C 1.32821 * 109.76033 * 179.97438 * 18 17 16 20 20 N 1.33818 * 132.50242 * 180.02562 * 19 18 17 21 21 C 1.31354 * 120.86617 * 179.97438 * 20 19 18 22 22 C 1.40038 * 120.31168 * 359.97438 * 21 20 19 23 23 C 1.35783 * 119.24002 * 0.02562 * 22 21 20 24 24 N 1.35973 * 119.02255 * 0.02562 * 23 22 21 25 25 N 1.31189 * 125.18393 * 269.71579 * 17 16 14 26 26 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 27 27 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 29 29 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 30 30 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 31 31 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 32 32 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 33 33 H 1.09003 * 109.46719 * 299.99416 * 16 14 13 34 34 H 1.08991 * 109.47126 * 59.99074 * 16 14 13 35 35 H 1.08001 * 119.84638 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.38502 * 180.02562 * 22 21 20 37 37 H 1.08002 * 120.49168 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 5.4542 0.8753 1.3334 9 14 3.0961 0.1164 2.5740 10 1 2.8687 -1.3195 2.2711 11 1 3.7966 0.2424 3.8773 12 1 1.7904 0.8204 2.6439 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 6 -1.3617 3.8852 -2.5234 18 7 -1.6689 5.1007 -2.0913 19 6 -2.9875 5.2602 -2.0993 20 7 -3.7760 6.2872 -1.7615 21 6 -5.0825 6.1952 -1.8619 22 6 -5.6742 5.0144 -2.3272 23 6 -4.8821 3.9669 -2.6723 24 7 -3.5332 4.0934 -2.5559 25 7 -2.4600 3.2339 -2.8243 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 5.8773 0.4775 2.1104 32 1 2.2719 2.1232 -1.9978 33 1 0.7275 4.1530 -2.8679 34 1 0.0672 2.6131 -3.4684 35 1 -5.7033 7.0342 -1.5843 36 1 -6.7482 4.9375 -2.4106 37 1 -5.3169 3.0468 -3.0340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183801507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:01 Heat of formation + Delta-G solvation = 78.218627 kcal Electronic energy + Delta-G solvation = -22390.380640 eV Core-core repulsion = 18976.680380 eV Total energy + Delta-G solvation = -3413.700260 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.97293 -40.93828 -39.73064 -37.16764 -35.61553 -34.43307 -33.79517 -32.91342 -31.79088 -30.52879 -29.19081 -25.70851 -24.99517 -24.54750 -23.21403 -21.91666 -21.22839 -19.47943 -19.27806 -19.03230 -17.96171 -17.64191 -17.27633 -17.04852 -16.48896 -16.12826 -15.52594 -15.20407 -14.92026 -14.61249 -14.42711 -14.11047 -13.89322 -13.77788 -13.69004 -13.63288 -13.15457 -13.06245 -12.87756 -12.79596 -12.42025 -11.87999 -11.41998 -11.34700 -11.25346 -10.99992 -10.94972 -10.86495 -10.56480 -9.89788 -9.80602 -8.38729 -6.43521 -0.48011 -0.31692 0.89030 1.24405 1.33135 1.34522 1.43104 1.70947 2.18090 2.24845 2.39781 2.55931 2.84106 2.96966 3.40494 3.52287 3.91544 4.00261 4.17340 4.21483 4.29521 4.32182 4.41402 4.46153 4.56722 4.81544 4.86922 4.96887 5.05272 5.08523 5.11277 5.20503 5.39576 5.40271 5.49223 5.63828 6.14030 6.40394 6.58701 6.81921 6.84022 7.18793 7.43255 8.76433 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.032177 B = 0.003558 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.989160 B = 7867.000532 C = 8021.896491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 C 0.251 3.749 4 H 0.016 0.984 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.031 3.969 8 N -0.932 5.932 9 Si 0.934 3.066 10 H -0.257 1.257 11 H -0.293 1.293 12 H -0.267 1.267 13 N -0.694 5.694 14 C 0.513 3.487 15 O -0.582 6.582 16 C -0.047 4.047 17 C 0.290 3.710 18 N -0.564 5.564 19 C 0.419 3.581 20 N -0.498 5.498 21 C 0.211 3.789 22 C -0.189 4.189 23 C 0.143 3.857 24 N -0.333 5.333 25 N -0.345 5.345 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.270 0.730 32 H 0.412 0.588 33 H 0.147 0.853 34 H 0.156 0.844 35 H 0.240 0.760 36 H 0.234 0.766 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.049 6.023 -12.078 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.174 4.174 3 C 0.146 3.854 4 H 0.034 0.966 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.169 4.169 8 N -0.571 5.571 9 Si 0.761 3.239 10 H -0.183 1.183 11 H -0.220 1.220 12 H -0.192 1.192 13 N -0.343 5.343 14 C 0.299 3.701 15 O -0.463 6.463 16 C -0.089 4.089 17 C 0.008 3.992 18 N -0.297 5.297 19 C 0.058 3.942 20 N -0.215 5.215 21 C 0.028 3.972 22 C -0.213 4.213 23 C 0.008 3.992 24 N -0.112 5.112 25 N -0.177 5.177 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.248 0.752 33 H 0.165 0.835 34 H 0.174 0.826 35 H 0.256 0.744 36 H 0.250 0.750 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -25.443 6.111 -11.212 28.467 hybrid contribution 0.083 -0.904 0.485 1.029 sum -25.359 5.207 -10.728 28.023 Atomic orbital electron populations 1.21735 0.95559 1.00378 1.01202 1.22195 0.95447 0.98458 1.01290 1.18776 0.93321 0.89619 0.83716 0.96585 1.21287 0.90158 1.38526 1.06969 0.92039 1.25503 0.95677 0.95920 0.99755 1.69966 1.10114 1.46179 1.30850 0.86081 0.79106 0.80055 0.78635 1.18252 1.21995 1.19223 1.45862 1.15306 1.55894 1.17286 1.20516 0.81894 0.78327 0.89361 1.90689 1.52586 1.60776 1.42236 1.20158 0.87837 1.03332 0.97543 1.23813 0.96202 0.87313 0.91852 1.70544 1.09481 1.20466 1.29243 1.22906 0.90766 0.84755 0.95737 1.68104 1.07833 1.24685 1.20869 1.24659 0.87871 0.99385 0.85248 1.22676 1.04844 0.91358 1.02431 1.23171 0.77361 1.03974 0.94704 1.48862 1.08284 1.12679 1.41394 1.78330 0.92803 1.14153 1.32460 0.92834 0.92225 0.95246 0.90683 0.93859 0.92060 0.75207 0.83535 0.82632 0.74422 0.74957 0.76950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.51 71.98 0.61 -4.72 16 2 C -0.14 -5.97 5.11 30.60 0.16 -5.81 16 3 C 0.25 12.11 1.83 44.24 0.08 12.19 16 4 H 0.02 0.90 6.62 -2.39 -0.02 0.88 16 5 C -0.53 -29.29 9.31 25.60 0.24 -29.05 16 6 H 0.06 3.56 7.98 -2.92 -0.02 3.54 16 7 C 0.03 1.80 5.45 84.66 0.46 2.26 16 8 N -0.93 -56.54 13.96 21.45 0.30 -56.24 16 9 Si 0.93 45.96 24.42 68.60 1.68 47.64 16 10 H -0.26 -11.80 6.82 99.48 0.68 -11.12 16 11 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 12 H -0.27 -13.35 6.53 99.48 0.65 -12.70 16 13 N -0.69 -27.27 5.02 -446.09 -2.24 -29.51 16 14 C 0.51 19.82 6.39 87.66 0.56 20.38 16 15 O -0.58 -27.65 13.17 -3.05 -0.04 -27.69 16 16 C -0.05 -1.36 6.33 29.10 0.18 -1.17 16 17 C 0.29 10.08 6.59 138.68 0.91 10.99 16 18 N -0.56 -21.55 11.25 -191.25 -2.15 -23.70 16 19 C 0.42 13.47 8.99 261.60 2.35 15.82 16 20 N -0.50 -12.39 10.48 -197.64 -2.07 -14.46 16 21 C 0.21 2.09 11.27 85.20 0.96 3.05 16 22 C -0.19 -0.89 10.06 22.14 0.22 -0.67 16 23 C 0.14 1.87 11.32 83.48 0.94 2.82 16 24 N -0.33 -9.02 3.91 -197.71 -0.77 -9.80 16 25 N -0.35 -11.27 12.78 -51.45 -0.66 -11.93 16 26 H 0.05 2.15 5.64 -2.39 -0.01 2.14 16 27 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.03 1.29 7.85 -2.39 -0.02 1.27 16 29 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.04 2.00 3.23 -2.39 -0.01 1.99 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.41 13.59 8.54 -92.71 -0.79 12.80 16 33 H 0.15 3.55 8.14 -2.39 -0.02 3.53 16 34 H 0.16 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.24 -0.32 8.06 -2.91 -0.02 -0.34 16 36 H 0.23 -1.72 8.06 -2.91 -0.02 -1.74 16 37 H 0.21 1.16 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -90.78 311.53 1.98 -88.80 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.25 Total: 10.81 kcal Atomic # 6 Polarization: 18.40 SS G_CDS: 7.69 Total: 26.09 kcal Atomic # 7 Polarization: -138.06 SS G_CDS: -7.59 Total: -145.65 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.04 Total: -27.69 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.68 Total: 47.64 kcal Total: -90.78 1.98 -88.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183801507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.022 kcal (2) G-P(sol) polarization free energy of solvation -90.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds