Wall clock time and date at job start Tue Mar 31 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37881 * 119.99818 * 64.73702 * 5 3 2 8 8 N 1.31514 * 119.99809 * 187.26380 * 7 5 3 9 9 Si 1.86797 * 120.00131 * 7.25952 * 7 5 3 10 10 H 1.48495 * 109.46960 * 269.99957 * 9 7 5 11 11 H 1.48492 * 109.46983 * 30.00111 * 9 7 5 12 12 H 1.48497 * 109.46898 * 149.99978 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.46978 * 179.97438 * 16 14 13 18 18 N 1.32621 * 125.18252 * 90.02587 * 17 16 14 19 19 C 1.32820 * 109.75759 * 179.97438 * 18 17 16 20 20 N 1.33817 * 132.50477 * 180.02562 * 19 18 17 21 21 C 1.31352 * 120.87046 * 179.97438 * 20 19 18 22 22 C 1.40050 * 120.30749 * 359.97438 * 21 20 19 23 23 C 1.35783 * 119.24019 * 0.02562 * 22 21 20 24 24 N 1.35971 * 119.02143 * 359.97438 * 23 22 21 25 25 N 1.31176 * 125.19287 * 269.72723 * 17 16 14 26 26 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 27 27 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 29 29 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 30 30 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 31 31 H 0.97003 * 119.99883 * 354.93902 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 33 33 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 34 34 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 35 35 H 1.07992 * 119.84900 * 179.97438 * 21 20 19 36 36 H 1.08005 * 120.38014 * 180.02562 * 22 21 20 37 37 H 1.08002 * 120.48871 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2862 8 7 5.4380 0.8380 -1.3494 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9153 -2.6640 11 1 1.8532 1.3600 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6726 17 6 -1.3441 3.8803 2.5515 18 7 -2.4532 3.2203 2.8566 19 6 -3.5107 3.9926 2.6348 20 7 -4.8251 3.7908 2.7845 21 6 -5.6898 4.7345 2.4894 22 6 -5.2473 5.9742 2.0111 23 6 -3.9154 6.1881 1.8559 24 7 -3.0461 5.1910 2.1703 25 7 -1.6496 5.0856 2.1336 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1425 -0.6140 32 1 2.2853 2.1184 1.9978 33 1 0.0905 2.6048 3.4843 34 1 0.7469 4.1462 2.8830 35 1 -6.7469 4.5536 2.6161 36 1 -5.9572 6.7511 1.7685 37 1 -3.5519 7.1366 1.4890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183801525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:05 Heat of formation + Delta-G solvation = 98.732011 kcal Electronic energy + Delta-G solvation = -22392.342649 eV Core-core repulsion = 18979.531916 eV Total energy + Delta-G solvation = -3412.810733 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.05328 -39.52059 -38.72108 -35.34688 -34.75561 -32.68930 -32.32440 -31.43336 -30.85408 -29.34671 -27.06991 -24.93974 -24.01730 -22.41622 -21.80807 -20.34928 -19.55524 -18.61451 -18.32138 -17.83201 -16.87740 -16.53881 -16.08147 -15.50313 -15.13858 -14.74242 -14.04379 -13.65503 -13.56775 -13.26310 -12.92748 -12.84902 -12.71301 -12.53346 -12.32509 -12.14806 -11.97801 -11.53547 -10.90121 -10.67399 -10.44426 -10.30214 -10.22475 -9.88403 -9.78943 -9.67367 -9.20226 -8.99547 -8.88004 -8.50897 -8.09570 -6.55156 -4.22769 0.15290 0.49200 1.69426 2.34783 3.01837 3.19617 3.22011 3.37535 3.46620 3.60707 3.67237 3.96652 4.02882 4.33245 4.41881 4.51247 4.74723 4.97881 5.20084 5.30171 5.33937 5.35584 5.55283 5.93511 6.05286 6.07298 6.09163 6.11736 6.28459 6.72886 6.79199 6.93053 7.06218 7.18884 7.35943 7.37460 7.64044 7.79877 8.23086 8.43462 8.69845 8.95331 9.47393 10.85522 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.031313 B = 0.003581 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.982335 B = 7816.602703 C = 7943.787944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.609 4.609 6 H 0.063 0.937 7 C 0.036 3.964 8 N -0.905 5.905 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.287 1.287 13 N -0.698 5.698 14 C 0.511 3.489 15 O -0.540 6.540 16 C -0.059 4.059 17 C 0.309 3.691 18 N -0.510 5.510 19 C 0.440 3.560 20 N -0.454 5.454 21 C 0.202 3.798 22 C -0.230 4.230 23 C 0.175 3.825 24 N -0.327 5.327 25 N -0.321 5.321 26 H 0.049 0.951 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.269 0.731 32 H 0.394 0.606 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.189 0.811 36 H 0.173 0.827 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.423 11.335 9.434 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.139 3.861 4 H 0.066 0.934 5 C -0.647 4.647 6 H 0.081 0.919 7 C -0.170 4.170 8 N -0.539 5.539 9 Si 0.877 3.123 10 H -0.206 1.206 11 H -0.200 1.200 12 H -0.214 1.214 13 N -0.346 5.346 14 C 0.294 3.706 15 O -0.419 6.419 16 C -0.101 4.101 17 C 0.028 3.972 18 N -0.241 5.241 19 C 0.079 3.921 20 N -0.168 5.168 21 C 0.016 3.984 22 C -0.255 4.255 23 C 0.037 3.963 24 N -0.106 5.106 25 N -0.152 5.152 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.227 0.773 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.206 0.794 36 H 0.191 0.809 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -20.264 9.852 7.489 23.744 hybrid contribution 0.254 1.530 1.603 2.230 sum -20.010 11.382 9.091 24.751 Atomic orbital electron populations 1.21889 0.97054 0.99061 1.02205 1.22249 0.94038 0.99814 1.01391 1.19258 0.95877 0.88557 0.82392 0.93420 1.22168 0.89660 1.48095 1.04786 0.91893 1.25681 0.97486 0.93590 1.00203 1.70836 1.04409 1.42539 1.36072 0.83952 0.75304 0.77246 0.75828 1.20646 1.19957 1.21400 1.46154 1.14206 1.55945 1.18299 1.19848 0.82992 0.79533 0.88204 1.90707 1.50895 1.59491 1.40765 1.20167 0.87727 1.02259 0.99980 1.23601 0.95404 0.87230 0.90960 1.70694 0.95144 1.29200 1.29059 1.22734 0.92469 0.82167 0.94704 1.67990 0.97054 1.32253 1.19469 1.23555 1.00122 0.87290 0.87477 1.21919 0.94348 1.01383 1.07893 1.22162 0.88318 0.93065 0.92734 1.48801 1.07510 1.12986 1.41304 1.78568 0.84383 1.21175 1.31089 0.93140 0.94926 0.92932 0.92275 0.92595 0.92130 0.77252 0.85772 0.86169 0.79403 0.80938 0.80123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.52 37.15 0.32 -2.77 16 2 C -0.14 -3.10 5.20 -26.74 -0.14 -3.24 16 3 C 0.24 5.85 1.81 -69.08 -0.13 5.73 16 4 H 0.05 1.28 6.07 -51.93 -0.32 0.96 16 5 C -0.61 -16.49 9.09 -34.44 -0.31 -16.81 16 6 H 0.06 1.76 7.95 -52.48 -0.42 1.34 16 7 C 0.04 1.03 5.42 -17.82 -0.10 0.93 16 8 N -0.90 -27.22 13.70 55.43 0.76 -26.46 16 9 Si 1.05 25.88 25.39 -169.99 -4.32 21.56 16 10 H -0.28 -6.56 6.73 56.52 0.38 -6.18 16 11 H -0.27 -6.62 6.38 56.52 0.36 -6.26 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 13 N -0.70 -13.96 5.03 -54.93 -0.28 -14.24 16 14 C 0.51 9.94 6.41 -10.98 -0.07 9.87 16 15 O -0.54 -12.62 13.18 5.56 0.07 -12.55 16 16 C -0.06 -0.87 6.33 -29.03 -0.18 -1.05 16 17 C 0.31 5.33 6.59 -157.01 -1.03 4.29 16 18 N -0.51 -9.29 11.25 -11.80 -0.13 -9.42 16 19 C 0.44 6.99 8.99 -323.14 -2.91 4.08 16 20 N -0.45 -5.81 10.48 -13.82 -0.14 -5.95 16 21 C 0.20 1.38 11.27 -17.08 -0.19 1.18 16 22 C -0.23 -1.13 10.07 -39.78 -0.40 -1.53 16 23 C 0.18 1.44 11.32 -16.60 -0.19 1.25 16 24 N -0.33 -4.59 3.91 -13.84 -0.05 -4.65 16 25 N -0.32 -5.36 12.78 32.39 0.41 -4.94 16 26 H 0.05 1.13 7.87 -51.93 -0.41 0.72 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 1.13 5.64 -51.93 -0.29 0.84 16 29 H 0.06 1.39 4.43 -51.93 -0.23 1.16 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.27 7.96 8.72 -40.82 -0.36 7.61 16 32 H 0.39 6.79 8.53 -40.82 -0.35 6.44 16 33 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.19 0.39 8.06 -52.49 -0.42 -0.03 16 36 H 0.17 0.05 8.06 -52.48 -0.42 -0.37 16 37 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 312.88 15.07 4.72 4.72 Total: -1.00 -38.41 312.88 -8.48 -46.89 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.19 Total: 3.11 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -5.33 Total: 1.93 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: 0.57 Total: -65.66 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -4.32 Total: 21.56 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -38.41 -8.48 -46.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183801525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.621 kcal (2) G-P(sol) polarization free energy of solvation -38.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds