Wall clock time and date at job start Tue Mar 31 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37881 * 119.99818 * 64.73702 * 5 3 2 8 8 N 1.31514 * 119.99809 * 187.26380 * 7 5 3 9 9 Si 1.86797 * 120.00131 * 7.25952 * 7 5 3 10 10 H 1.48495 * 109.46960 * 269.99957 * 9 7 5 11 11 H 1.48492 * 109.46983 * 30.00111 * 9 7 5 12 12 H 1.48497 * 109.46898 * 149.99978 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.46978 * 179.97438 * 16 14 13 18 18 N 1.32621 * 125.18252 * 90.02587 * 17 16 14 19 19 C 1.32820 * 109.75759 * 179.97438 * 18 17 16 20 20 N 1.33817 * 132.50477 * 180.02562 * 19 18 17 21 21 C 1.31352 * 120.87046 * 179.97438 * 20 19 18 22 22 C 1.40050 * 120.30749 * 359.97438 * 21 20 19 23 23 C 1.35783 * 119.24019 * 0.02562 * 22 21 20 24 24 N 1.35971 * 119.02143 * 359.97438 * 23 22 21 25 25 N 1.31176 * 125.19287 * 269.72723 * 17 16 14 26 26 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 27 27 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 29 29 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 30 30 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 31 31 H 0.97003 * 119.99883 * 354.93902 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 33 33 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 34 34 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 35 35 H 1.07992 * 119.84900 * 179.97438 * 21 20 19 36 36 H 1.08005 * 120.38014 * 180.02562 * 22 21 20 37 37 H 1.08002 * 120.48871 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2862 8 7 5.4380 0.8380 -1.3494 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9153 -2.6640 11 1 1.8532 1.3600 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6726 17 6 -1.3441 3.8803 2.5515 18 7 -2.4532 3.2203 2.8566 19 6 -3.5107 3.9926 2.6348 20 7 -4.8251 3.7908 2.7845 21 6 -5.6898 4.7345 2.4894 22 6 -5.2473 5.9742 2.0111 23 6 -3.9154 6.1881 1.8559 24 7 -3.0461 5.1910 2.1703 25 7 -1.6496 5.0856 2.1336 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1425 -0.6140 32 1 2.2853 2.1184 1.9978 33 1 0.0905 2.6048 3.4843 34 1 0.7469 4.1462 2.8830 35 1 -6.7469 4.5536 2.6161 36 1 -5.9572 6.7511 1.7685 37 1 -3.5519 7.1366 1.4890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183801525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:04 Heat of formation + Delta-G solvation = 70.418162 kcal Electronic energy + Delta-G solvation = -22393.570430 eV Core-core repulsion = 18979.531916 eV Total energy + Delta-G solvation = -3414.038514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.98835 -40.94745 -39.74027 -37.15693 -35.62708 -34.50416 -33.80360 -32.89290 -31.80293 -30.52424 -28.93603 -25.70607 -24.93266 -24.29905 -23.17062 -21.83987 -21.25690 -19.85967 -19.46805 -19.11363 -18.19749 -17.47336 -17.30210 -16.99089 -16.54427 -15.70649 -15.48699 -15.15136 -14.72956 -14.59363 -14.41928 -14.25244 -14.10416 -13.82898 -13.71918 -13.70189 -13.08811 -13.04516 -12.75450 -12.51646 -12.32540 -11.74685 -11.52999 -11.36570 -11.04864 -11.01510 -10.92637 -10.67502 -10.60011 -9.90934 -9.85623 -8.79281 -6.47373 -0.49388 -0.32601 0.87586 1.32568 1.38839 1.48069 1.65952 1.68667 2.16255 2.37096 2.38545 2.54867 2.83087 3.01487 3.38285 3.51081 3.90413 3.97932 4.14911 4.25763 4.28453 4.34107 4.41320 4.49100 4.54990 4.82559 4.85750 5.02490 5.04164 5.07830 5.14445 5.26119 5.38335 5.50761 5.61362 5.63153 5.99899 6.38997 6.51384 6.78600 6.79714 7.26163 7.39867 8.60611 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.031313 B = 0.003581 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.982335 B = 7816.602703 C = 7943.787944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.133 4.133 3 C 0.248 3.752 4 H 0.021 0.979 5 C -0.602 4.602 6 H 0.046 0.954 7 C -0.008 4.008 8 N -0.935 5.935 9 Si 1.077 2.923 10 H -0.257 1.257 11 H -0.272 1.272 12 H -0.285 1.285 13 N -0.696 5.696 14 C 0.512 3.488 15 O -0.580 6.580 16 C -0.047 4.047 17 C 0.290 3.710 18 N -0.559 5.559 19 C 0.419 3.581 20 N -0.496 5.496 21 C 0.212 3.788 22 C -0.188 4.188 23 C 0.142 3.858 24 N -0.334 5.334 25 N -0.351 5.351 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.259 0.741 32 H 0.408 0.592 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.241 0.759 36 H 0.234 0.766 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.796 12.579 9.884 28.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.172 4.172 3 C 0.143 3.857 4 H 0.039 0.961 5 C -0.640 4.640 6 H 0.065 0.935 7 C -0.208 4.208 8 N -0.570 5.570 9 Si 0.901 3.099 10 H -0.183 1.183 11 H -0.197 1.197 12 H -0.211 1.211 13 N -0.346 5.346 14 C 0.298 3.702 15 O -0.461 6.461 16 C -0.089 4.089 17 C 0.008 3.992 18 N -0.292 5.292 19 C 0.059 3.941 20 N -0.213 5.213 21 C 0.029 3.971 22 C -0.212 4.212 23 C 0.006 3.994 24 N -0.113 5.113 25 N -0.183 5.183 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.244 0.756 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.257 0.743 36 H 0.250 0.750 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -23.681 11.143 7.972 27.359 hybrid contribution 1.020 1.341 1.508 2.261 sum -22.661 12.484 9.480 27.554 Atomic orbital electron populations 1.21749 0.95760 1.00361 1.01145 1.22153 0.95062 0.98473 1.01469 1.18902 0.93634 0.89641 0.83511 0.96127 1.22356 0.91305 1.46475 1.03915 0.93542 1.26739 0.97694 0.93718 1.02638 1.70926 1.05283 1.44731 1.36091 0.83559 0.74239 0.78449 0.73629 1.18253 1.19704 1.21121 1.45949 1.15134 1.56055 1.17437 1.20514 0.81859 0.78528 0.89305 1.90682 1.51928 1.60808 1.42681 1.20149 0.87736 1.03375 0.97627 1.23782 0.95867 0.87649 0.91866 1.70536 0.96232 1.31152 1.31305 1.22933 0.93276 0.82688 0.95198 1.68111 0.96166 1.34852 1.22135 1.24675 1.01493 0.86769 0.84120 1.22684 0.93674 1.01574 1.03285 1.23162 0.89055 0.93411 0.93743 1.48853 1.06878 1.13929 1.41621 1.78348 0.86499 1.21385 1.32068 0.94803 0.92324 0.93427 0.93005 0.91643 0.93154 0.75617 0.83173 0.83358 0.74288 0.74959 0.77156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 8.52 71.98 0.61 -4.95 16 2 C -0.13 -5.96 5.20 30.59 0.16 -5.80 16 3 C 0.25 12.04 1.81 44.24 0.08 12.12 16 4 H 0.02 1.13 6.07 -2.39 -0.01 1.12 16 5 C -0.60 -33.08 9.09 25.60 0.23 -32.84 16 6 H 0.05 2.65 7.95 -2.91 -0.02 2.63 16 7 C -0.01 -0.45 5.42 84.66 0.46 0.01 16 8 N -0.93 -57.20 13.70 21.45 0.29 -56.91 16 9 Si 1.08 52.36 25.39 68.60 1.74 54.10 16 10 H -0.26 -11.52 6.73 99.48 0.67 -10.85 16 11 H -0.27 -13.01 6.38 99.48 0.63 -12.38 16 12 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 13 N -0.70 -27.88 5.03 -446.09 -2.24 -30.13 16 14 C 0.51 20.06 6.41 87.66 0.56 20.62 16 15 O -0.58 -27.69 13.18 -3.02 -0.04 -27.73 16 16 C -0.05 -1.39 6.33 29.10 0.18 -1.20 16 17 C 0.29 10.18 6.59 138.68 0.91 11.09 16 18 N -0.56 -20.93 11.25 -191.25 -2.15 -23.08 16 19 C 0.42 13.34 8.99 261.60 2.35 15.69 16 20 N -0.50 -12.02 10.48 -197.64 -2.07 -14.09 16 21 C 0.21 2.02 11.27 85.20 0.96 2.98 16 22 C -0.19 -0.91 10.07 22.14 0.22 -0.68 16 23 C 0.14 1.93 11.32 83.48 0.94 2.88 16 24 N -0.33 -9.20 3.91 -197.71 -0.77 -9.97 16 25 N -0.35 -11.86 12.78 -51.45 -0.66 -12.52 16 26 H 0.03 1.50 7.87 -2.38 -0.02 1.48 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.05 2.03 5.64 -2.39 -0.01 2.02 16 29 H 0.05 2.39 4.43 -2.39 -0.01 2.38 16 30 H 0.06 2.78 8.14 -2.38 -0.02 2.76 16 31 H 0.26 15.80 8.72 -92.71 -0.81 15.00 16 32 H 0.41 13.93 8.53 -92.71 -0.79 13.14 16 33 H 0.15 3.54 8.14 -2.39 -0.02 3.52 16 34 H 0.15 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.24 -0.44 8.06 -2.91 -0.02 -0.47 16 36 H 0.23 -1.69 8.06 -2.91 -0.02 -1.71 16 37 H 0.21 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -89.88 312.88 1.97 -87.91 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.18 Total: 12.53 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 7.68 Total: 19.90 kcal Atomic # 7 Polarization: -139.10 SS G_CDS: -7.60 Total: -146.70 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.04 Total: -27.73 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 1.74 Total: 54.10 kcal Total: -89.88 1.97 -87.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183801525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.326 kcal (2) G-P(sol) polarization free energy of solvation -89.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds