Wall clock time and date at job start Tue Mar 31 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 5 5 C 1.46903 * 110.99908 * 274.99684 * 4 2 1 6 6 C 1.52996 * 109.47400 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47333 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.47164 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99684 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99855 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00011 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99793 * 179.97438 * 10 8 7 13 13 H 1.48491 * 109.47082 * 60.00128 * 12 10 8 14 14 H 1.48504 * 109.46961 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46984 * 299.99593 * 12 10 8 16 16 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 17 17 C 1.31820 * 124.30047 * 100.00188 * 16 2 1 18 18 C 1.45390 * 114.89390 * 179.97438 * 17 16 2 19 19 C 1.41172 * 129.33925 * 180.02562 * 18 17 16 20 20 C 1.36098 * 120.45494 * 179.97438 * 19 18 17 21 21 C 1.38850 * 120.58988 * 359.95925 * 20 19 18 22 22 C 1.37462 * 120.18996 * 0.03811 * 21 20 19 23 23 C 1.39734 * 111.82956 * 359.97438 * 18 17 16 24 24 S 1.75304 * 124.29694 * 279.70356 * 16 2 1 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.00895 * 111.00219 * 151.04779 * 4 2 1 29 29 H 1.09003 * 109.46856 * 300.00136 * 5 4 2 30 30 H 1.09001 * 109.47072 * 60.00127 * 5 4 2 31 31 H 1.09000 * 109.47322 * 300.00427 * 6 5 4 32 32 H 1.09001 * 109.46886 * 60.00036 * 6 5 4 33 33 H 1.09003 * 109.47173 * 299.99675 * 7 6 5 34 34 H 1.08992 * 109.47026 * 60.00010 * 7 6 5 35 35 H 0.97000 * 120.00136 * 179.97438 * 11 10 8 36 36 H 1.08003 * 122.55171 * 359.95918 * 17 16 2 37 37 H 1.08001 * 119.77217 * 359.96974 * 19 18 17 38 38 H 1.08001 * 119.70271 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.89915 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.91168 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5332 3.5744 7 6 2.6599 0.4198 4.7697 8 6 3.1653 -0.3245 5.9787 9 1 3.4149 -1.3725 5.9023 10 6 3.3091 0.3324 7.1823 11 7 3.0056 1.6087 7.2752 12 14 3.9349 -0.5903 8.6811 13 1 5.2908 -1.1272 8.4013 14 1 3.9991 0.3350 9.8409 15 1 3.0128 -1.7119 8.9925 16 6 2.0323 -0.7104 -1.2305 17 6 2.4582 -0.1004 -2.3187 18 6 2.8979 -0.9861 -3.3845 19 6 3.4047 -0.6656 -4.6625 20 6 3.7664 -1.6514 -5.5283 21 6 3.6440 -2.9871 -5.1693 22 6 3.1536 -3.3280 -3.9312 23 6 2.7756 -2.3311 -3.0260 24 16 2.1314 -2.4531 -1.3937 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 2.9172 -1.1205 1.0287 29 1 2.7589 1.0461 2.1181 30 1 1.0871 0.6163 2.5525 31 1 1.9183 -1.3565 3.8030 32 1 3.5903 -0.9273 3.3691 33 1 3.3364 1.2434 4.5415 34 1 1.6644 0.8134 4.9749 35 1 3.1064 2.0708 8.1221 36 1 2.4787 0.9754 -2.4115 37 1 3.5060 0.3691 -4.9552 38 1 4.1523 -1.3924 -6.5032 39 1 3.9347 -3.7603 -5.8650 40 1 3.0599 -4.3683 -3.6569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184363106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:54 Heat of formation + Delta-G solvation = 22.671834 kcal Electronic energy + Delta-G solvation = -19159.462527 eV Core-core repulsion = 16257.354041 eV Total energy + Delta-G solvation = -2902.108487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.73341 -37.68700 -35.25210 -33.64502 -31.95438 -31.23737 -29.76247 -28.55046 -26.10320 -24.08249 -23.43562 -22.42793 -21.04932 -20.60181 -19.85166 -17.99921 -16.34345 -16.27705 -15.74955 -15.62258 -14.96586 -14.59041 -14.33323 -14.26275 -13.96768 -13.72197 -13.40076 -13.15954 -12.56945 -12.19068 -12.08760 -11.89877 -11.83074 -11.54478 -11.37712 -11.16153 -11.09127 -10.81004 -10.62666 -10.54968 -10.51402 -9.87443 -9.68629 -9.33799 -9.06287 -8.63863 -8.32791 -8.28847 -7.87122 -5.97834 -3.99877 0.51221 0.99553 1.37032 1.91204 2.06095 3.35319 3.39199 3.42158 3.47483 4.12082 4.40511 4.49942 4.54226 4.65986 4.82988 5.02262 5.10807 5.22777 5.28860 5.37920 5.44590 5.54664 5.68365 5.70123 5.72244 5.81555 5.88872 5.93117 6.05720 6.17842 6.21225 6.24512 6.34082 6.59372 6.71013 6.75514 7.13932 7.26491 7.53693 7.69850 7.84762 8.02428 8.45715 9.07047 9.63977 11.13603 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.031099 B = 0.002569 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.128481 B =10894.946886 C =11223.834107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.147 3.853 3 H 0.062 0.938 4 N -0.685 5.685 5 C 0.059 3.941 6 C -0.107 4.107 7 C 0.023 3.977 8 C -0.519 4.519 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.276 1.276 16 C -0.151 4.151 17 C -0.128 4.128 18 C -0.072 4.072 19 C -0.081 4.081 20 C -0.122 4.122 21 C -0.109 4.109 22 C -0.082 4.082 23 C -0.152 4.152 24 S 0.129 5.871 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.341 0.659 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.013 0.987 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.143 0.857 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 -5.721 -26.777 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.036 3.964 3 H 0.080 0.920 4 N -0.318 5.318 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.267 4.267 17 C -0.158 4.158 18 C -0.080 4.080 19 C -0.101 4.101 20 C -0.142 4.142 21 C -0.130 4.130 22 C -0.105 4.105 23 C -0.267 4.267 24 S 0.395 5.605 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.159 0.841 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.161 0.839 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.435 -6.978 -25.426 26.479 hybrid contribution 1.506 1.345 -0.285 2.039 sum -0.929 -5.633 -25.712 26.338 Atomic orbital electron populations 1.21809 0.93093 1.02843 1.01681 1.20140 0.96311 0.94936 0.85028 0.92036 1.60757 1.33604 1.33776 1.03620 1.22202 1.00717 0.93628 0.90340 1.21623 0.99354 0.99497 0.93995 1.19057 0.97099 0.94197 0.91134 1.21220 1.43575 0.96378 0.94566 0.92714 1.25029 0.95646 0.94891 0.98960 1.69955 1.48910 1.08987 1.25795 0.86651 0.79437 0.79612 0.82266 1.20270 1.21323 1.20207 1.24197 1.05046 0.97496 0.99979 1.20820 1.02589 1.00331 0.92110 1.19258 1.01969 0.91480 0.95339 1.20708 0.97901 0.99746 0.91737 1.20681 1.00925 0.92851 0.99768 1.21029 0.99455 0.96555 0.95945 1.20489 0.99217 0.97852 0.92930 1.22989 1.06779 0.96976 0.99995 1.84475 1.66433 1.02614 1.06990 0.91724 0.91559 0.92578 0.84060 0.95532 0.91180 0.92459 0.93624 0.96830 0.96569 0.92991 0.83948 0.85746 0.85648 0.85413 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.40 37.16 0.35 -1.25 16 2 C 0.15 1.86 3.01 -68.87 -0.21 1.65 16 3 H 0.06 0.76 7.76 -51.93 -0.40 0.36 16 4 N -0.69 -10.13 6.06 -107.95 -0.65 -10.78 16 5 C 0.06 1.02 5.48 -3.82 -0.02 1.00 16 6 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 7 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 8 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 9 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 12 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 C -0.15 -1.81 5.04 -36.20 -0.18 -1.99 16 17 C -0.13 -1.42 10.19 -38.63 -0.39 -1.82 16 18 C -0.07 -0.81 6.04 -105.38 -0.64 -1.44 16 19 C -0.08 -0.74 10.05 -39.24 -0.39 -1.14 16 20 C -0.12 -0.96 9.95 -40.12 -0.40 -1.36 16 21 C -0.11 -0.87 10.03 -39.64 -0.40 -1.27 16 22 C -0.08 -0.79 10.07 -39.26 -0.40 -1.18 16 23 C -0.15 -1.73 6.48 -38.42 -0.25 -1.98 16 24 S 0.13 1.53 22.66 -107.50 -2.44 -0.91 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.81 7.45 -51.93 -0.39 0.42 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.34 4.99 8.11 -39.29 -0.32 4.67 16 29 H 0.03 0.46 8.06 -51.93 -0.42 0.04 16 30 H 0.07 1.21 7.44 -51.93 -0.39 0.83 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -30.98 347.56 -11.86 -42.85 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.11 Total: -0.36 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -3.62 Total: -26.44 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.08 Total: -37.31 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.44 Total: -0.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.98 -11.86 -42.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184363106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.518 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds