Wall clock time and date at job start Tue Mar 31 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 5 5 C 1.46903 * 110.99908 * 274.99684 * 4 2 1 6 6 C 1.52996 * 109.47400 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47333 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.47164 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99684 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99855 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00011 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99793 * 179.97438 * 10 8 7 13 13 H 1.48491 * 109.47082 * 60.00128 * 12 10 8 14 14 H 1.48504 * 109.46961 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46984 * 299.99593 * 12 10 8 16 16 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 17 17 C 1.31820 * 124.30047 * 100.00188 * 16 2 1 18 18 C 1.45390 * 114.89390 * 179.97438 * 17 16 2 19 19 C 1.41172 * 129.33925 * 180.02562 * 18 17 16 20 20 C 1.36098 * 120.45494 * 179.97438 * 19 18 17 21 21 C 1.38850 * 120.58988 * 359.95925 * 20 19 18 22 22 C 1.37462 * 120.18996 * 0.03811 * 21 20 19 23 23 C 1.39734 * 111.82956 * 359.97438 * 18 17 16 24 24 S 1.75304 * 124.29694 * 279.70356 * 16 2 1 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.00895 * 111.00219 * 151.04779 * 4 2 1 29 29 H 1.09003 * 109.46856 * 300.00136 * 5 4 2 30 30 H 1.09001 * 109.47072 * 60.00127 * 5 4 2 31 31 H 1.09000 * 109.47322 * 300.00427 * 6 5 4 32 32 H 1.09001 * 109.46886 * 60.00036 * 6 5 4 33 33 H 1.09003 * 109.47173 * 299.99675 * 7 6 5 34 34 H 1.08992 * 109.47026 * 60.00010 * 7 6 5 35 35 H 0.97000 * 120.00136 * 179.97438 * 11 10 8 36 36 H 1.08003 * 122.55171 * 359.95918 * 17 16 2 37 37 H 1.08001 * 119.77217 * 359.96974 * 19 18 17 38 38 H 1.08001 * 119.70271 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.89915 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.91168 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5332 3.5744 7 6 2.6599 0.4198 4.7697 8 6 3.1653 -0.3245 5.9787 9 1 3.4149 -1.3725 5.9023 10 6 3.3091 0.3324 7.1823 11 7 3.0056 1.6087 7.2752 12 14 3.9349 -0.5903 8.6811 13 1 5.2908 -1.1272 8.4013 14 1 3.9991 0.3350 9.8409 15 1 3.0128 -1.7119 8.9925 16 6 2.0323 -0.7104 -1.2305 17 6 2.4582 -0.1004 -2.3187 18 6 2.8979 -0.9861 -3.3845 19 6 3.4047 -0.6656 -4.6625 20 6 3.7664 -1.6514 -5.5283 21 6 3.6440 -2.9871 -5.1693 22 6 3.1536 -3.3280 -3.9312 23 6 2.7756 -2.3311 -3.0260 24 16 2.1314 -2.4531 -1.3937 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 2.9172 -1.1205 1.0287 29 1 2.7589 1.0461 2.1181 30 1 1.0871 0.6163 2.5525 31 1 1.9183 -1.3565 3.8030 32 1 3.5903 -0.9273 3.3691 33 1 3.3364 1.2434 4.5415 34 1 1.6644 0.8134 4.9749 35 1 3.1064 2.0708 8.1221 36 1 2.4787 0.9754 -2.4115 37 1 3.5060 0.3691 -4.9552 38 1 4.1523 -1.3924 -6.5032 39 1 3.9347 -3.7603 -5.8650 40 1 3.0599 -4.3683 -3.6569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184363106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:53 Heat of formation + Delta-G solvation = 6.347094 kcal Electronic energy + Delta-G solvation = -19160.170421 eV Core-core repulsion = 16257.354041 eV Total energy + Delta-G solvation = -2902.816380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.45702 -38.77804 -36.48700 -35.30533 -33.62364 -31.90751 -31.17668 -29.42703 -27.87087 -25.23706 -24.35946 -23.71614 -22.10530 -21.99421 -20.98010 -18.80293 -18.47612 -17.22526 -16.74278 -16.53560 -16.48885 -15.97381 -15.44125 -15.24104 -15.13731 -14.50312 -14.45507 -14.35840 -13.92403 -13.72461 -13.49099 -13.22758 -12.85719 -12.73683 -12.66761 -12.44055 -12.32274 -12.27110 -12.00592 -11.92432 -11.56167 -11.43622 -11.38812 -11.11984 -10.61393 -10.55203 -9.50440 -9.41773 -8.68798 -8.20448 -6.31415 -0.25246 0.30694 0.54058 1.07957 1.27565 1.39560 1.42850 1.50753 2.40725 2.78561 3.06814 3.12524 3.43913 3.85070 4.01962 4.11820 4.18298 4.23648 4.30741 4.40151 4.43517 4.46684 4.68466 4.74914 4.76221 4.82049 4.91180 4.96612 4.97448 5.08019 5.13376 5.21217 5.29852 5.37771 5.47362 5.51527 5.55470 5.74160 5.85236 5.96022 5.98214 6.26144 6.32622 6.85049 7.37630 8.91251 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.031099 B = 0.002569 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.128481 B =10894.946886 C =11223.834107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.150 3.850 3 H 0.066 0.934 4 N -0.686 5.686 5 C 0.074 3.926 6 C -0.092 4.092 7 C 0.027 3.973 8 C -0.544 4.544 9 H 0.058 0.942 10 C -0.001 4.001 11 N -0.933 5.933 12 Si 0.965 3.035 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.267 1.267 16 C -0.166 4.166 17 C -0.121 4.121 18 C -0.096 4.096 19 C -0.088 4.088 20 C -0.121 4.121 21 C -0.102 4.102 22 C -0.100 4.100 23 C -0.166 4.166 24 S 0.098 5.902 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.342 0.658 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.048 0.952 33 H -0.009 1.009 34 H -0.007 1.007 35 H 0.264 0.736 36 H 0.159 0.841 37 H 0.144 0.856 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.623 -6.493 -28.597 29.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.084 0.916 4 N -0.318 5.318 5 C -0.055 4.055 6 C -0.130 4.130 7 C -0.011 4.011 8 C -0.582 4.582 9 H 0.076 0.924 10 C -0.199 4.199 11 N -0.573 5.573 12 Si 0.789 3.211 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.192 1.192 16 C -0.282 4.282 17 C -0.152 4.152 18 C -0.104 4.104 19 C -0.108 4.108 20 C -0.141 4.141 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.281 4.281 24 S 0.363 5.637 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.161 0.839 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.010 0.990 34 H 0.011 0.989 35 H 0.073 0.927 36 H 0.177 0.823 37 H 0.162 0.838 38 H 0.174 0.826 39 H 0.175 0.825 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.646 -7.758 -27.268 28.398 hybrid contribution 1.288 1.585 0.120 2.045 sum -0.358 -6.173 -27.148 27.843 Atomic orbital electron populations 1.21783 0.92562 1.02510 1.02198 1.20128 0.96674 0.94953 0.84344 0.91594 1.60675 1.33730 1.33408 1.03962 1.21893 1.00317 0.93370 0.89920 1.21366 0.99644 0.98353 0.93645 1.18954 0.94919 0.94377 0.92855 1.21670 1.43878 0.96844 0.95851 0.92353 1.25988 0.95676 0.95802 1.02424 1.70086 1.49795 1.10648 1.26813 0.85500 0.79196 0.78371 0.77991 1.19196 1.20705 1.19193 1.24040 1.06756 0.97265 1.00093 1.21071 1.01127 1.01219 0.91762 1.19516 1.03167 0.91378 0.96386 1.21043 0.97412 1.01311 0.91033 1.21115 0.99710 0.92513 1.00742 1.21461 0.97649 0.97621 0.95547 1.20795 0.99800 0.98211 0.93490 1.23163 1.07459 0.97828 0.99641 1.84439 1.67433 1.03245 1.08545 0.92466 0.92220 0.90827 0.83931 0.95534 0.91323 0.92872 0.93364 0.99047 0.98866 0.92741 0.82341 0.83788 0.82585 0.82451 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.40 71.98 0.68 -2.39 16 2 C 0.15 3.73 3.01 44.17 0.13 3.86 16 3 H 0.07 1.59 7.76 -2.39 -0.02 1.57 16 4 N -0.69 -20.28 6.06 -495.44 -3.00 -23.28 16 5 C 0.07 2.56 5.48 86.30 0.47 3.04 16 6 C -0.09 -3.91 5.41 30.59 0.17 -3.74 16 7 C 0.03 1.43 4.97 29.85 0.15 1.58 16 8 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 9 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 10 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 11 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 12 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 C -0.17 -3.92 5.04 24.91 0.13 -3.79 16 17 C -0.12 -2.59 10.19 23.33 0.24 -2.35 16 18 C -0.10 -2.05 6.04 -20.36 -0.12 -2.17 16 19 C -0.09 -1.41 10.05 22.49 0.23 -1.18 16 20 C -0.12 -1.52 9.95 21.92 0.22 -1.30 16 21 C -0.10 -1.34 10.03 22.23 0.22 -1.12 16 22 C -0.10 -1.78 10.07 22.48 0.23 -1.55 16 23 C -0.17 -3.68 6.48 23.02 0.15 -3.53 16 24 S 0.10 2.35 22.66 -56.49 -1.28 1.07 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.44 7.45 -2.39 -0.02 1.42 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.34 10.04 8.11 -89.70 -0.73 9.31 16 29 H 0.03 0.92 8.06 -2.39 -0.02 0.90 16 30 H 0.07 2.41 7.44 -2.39 -0.02 2.39 16 31 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 39 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 40 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -67.11 347.56 1.90 -65.21 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.29 Total: 13.09 kcal Atomic # 6 Polarization: -49.38 SS G_CDS: 3.57 Total: -45.80 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -2.72 Total: -80.61 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.28 Total: 1.07 kcal Total: -67.11 1.90 -65.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184363106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.557 kcal (2) G-P(sol) polarization free energy of solvation -67.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds