Wall clock time and date at job start Tue Mar 31 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47321 * 2 1 4 4 C 1.50707 * 109.46951 * 239.99914 * 2 1 3 5 5 H 1.07998 * 120.00117 * 239.99689 * 4 2 1 6 6 C 1.37873 * 120.00045 * 60.00626 * 4 2 1 7 7 N 1.31516 * 119.99826 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00146 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47153 * 59.99159 * 8 6 4 10 10 H 1.48501 * 109.46840 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46518 * 299.99096 * 8 6 4 12 12 N 1.46496 * 109.47169 * 120.00327 * 2 1 3 13 13 C 1.46499 * 120.00281 * 59.99553 * 12 2 1 14 14 C 1.34778 * 119.99665 * 240.00185 * 12 2 1 15 15 O 1.21586 * 120.00390 * 359.97438 * 14 12 2 16 16 N 1.34776 * 119.99939 * 179.97438 * 14 12 2 17 17 C 1.39660 * 120.00052 * 179.97438 * 16 14 12 18 18 N 1.32939 * 125.26379 * 359.97438 * 17 16 14 19 19 C 1.32921 * 109.62780 * 179.97438 * 18 17 16 20 20 C 1.40623 * 132.76053 * 179.97438 * 19 18 17 21 21 C 1.36235 * 119.27023 * 180.02562 * 20 19 18 22 22 C 1.40225 * 119.60666 * 0.02562 * 21 20 19 23 23 C 1.35234 * 120.19585 * 359.97438 * 22 21 20 24 24 N 1.35859 * 120.58755 * 359.97438 * 23 22 21 25 25 N 1.31749 * 125.26205 * 180.02562 * 17 16 14 26 26 H 1.09001 * 109.46865 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46931 * 299.99983 * 1 2 3 28 28 H 1.09002 * 109.46946 * 60.00416 * 1 2 3 29 29 H 0.97005 * 120.00230 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47022 * 270.00172 * 13 12 2 31 31 H 1.09000 * 109.46767 * 30.00442 * 13 12 2 32 32 H 1.09006 * 109.46879 * 150.00482 * 13 12 2 33 33 H 0.97003 * 119.99977 * 359.97438 * 16 14 12 34 34 H 1.08001 * 120.36248 * 0.04603 * 20 19 18 35 35 H 1.08000 * 120.19474 * 180.27185 * 21 20 19 36 36 H 1.07996 * 119.89850 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.70612 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.8258 -2.5202 -4.0078 10 1 1.8260 -0.4205 -5.2205 11 1 3.8063 -1.1209 -4.0082 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0872 1.1283 1.8907 16 7 3.2420 -0.6708 3.1840 17 6 4.0454 0.0078 4.1030 18 7 4.4303 1.2757 3.9967 19 6 5.1848 1.6024 5.0411 20 6 5.8355 2.7920 5.4140 21 6 6.5544 2.8234 6.5708 22 6 6.6343 1.6729 7.3684 23 6 6.0011 0.5389 6.9917 24 7 5.2811 0.4989 5.8403 25 7 4.5397 -0.5100 5.2090 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7083 1.1610 -3.4844 30 1 0.7376 -2.1443 1.9993 31 1 1.5295 -2.5969 0.4708 32 1 2.4629 -2.5819 1.9864 33 1 3.0071 -1.5993 3.3378 34 1 5.7658 3.6710 4.7904 35 1 7.0565 3.7304 6.8738 36 1 7.2032 1.6924 8.2861 37 1 6.0676 -0.3426 7.6122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184377822.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:25 Heat of formation + Delta-G solvation = 123.553112 kcal Electronic energy + Delta-G solvation = -22372.815244 eV Core-core repulsion = 18961.080834 eV Total energy + Delta-G solvation = -3411.734409 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.62134 -39.70783 -37.89088 -35.47989 -34.29861 -33.50994 -32.67369 -30.43810 -29.82910 -29.05174 -26.19514 -25.19737 -24.08614 -23.40174 -22.56775 -20.78081 -19.44229 -18.10740 -17.54799 -16.87658 -16.65132 -16.35515 -16.15644 -15.43699 -15.02052 -14.77757 -14.70403 -14.05569 -13.20214 -13.02054 -12.85677 -12.72442 -12.50798 -12.21439 -11.67029 -11.51461 -11.38611 -11.24206 -11.03564 -10.84101 -10.67761 -10.41816 -10.23305 -10.14003 -9.96238 -9.25940 -9.09228 -8.71759 -8.40311 -8.25181 -7.58119 -6.04747 -4.12722 0.57123 0.87751 1.85580 2.69009 2.91008 3.30226 3.34962 3.35397 3.37897 3.89480 4.00649 4.21115 4.40291 4.50991 4.55487 4.75176 5.08188 5.13727 5.26516 5.53558 5.62262 5.76455 5.88676 5.96633 6.02217 6.25518 6.28586 6.58128 6.74240 6.82083 6.86679 7.00282 7.11733 7.46945 7.64500 7.74705 8.03984 8.17416 8.26173 8.63300 8.87831 9.21754 9.53821 11.00643 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.030749 B = 0.003457 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.379873 B = 8097.521268 C = 8357.242264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.274 3.726 3 H 0.066 0.934 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.601 5.601 13 C 0.081 3.919 14 C 0.694 3.306 15 O -0.534 6.534 16 N -0.641 5.641 17 C 0.513 3.487 18 N -0.511 5.511 19 C 0.290 3.710 20 C -0.104 4.104 21 C -0.064 4.064 22 C -0.172 4.172 23 C 0.121 3.879 24 N -0.286 5.286 25 N -0.376 5.376 26 H 0.030 0.970 27 H 0.012 0.988 28 H 0.095 0.905 29 H 0.264 0.736 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.416 0.584 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.859 -1.250 19.915 21.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.174 3.826 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.337 5.337 13 C -0.063 4.063 14 C 0.394 3.606 15 O -0.404 6.404 16 N -0.299 5.299 17 C 0.145 3.855 18 N -0.243 5.243 19 C 0.036 3.964 20 C -0.126 4.126 21 C -0.090 4.090 22 C -0.195 4.195 23 C -0.008 4.008 24 N -0.061 5.061 25 N -0.217 5.217 26 H 0.049 0.951 27 H 0.031 0.969 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.255 0.745 34 H 0.175 0.825 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.519 -0.878 19.218 21.039 hybrid contribution 0.290 -1.081 -0.605 1.273 sum 8.809 -1.959 18.613 20.685 Atomic orbital electron populations 1.22107 0.98067 0.99452 1.00913 1.18931 0.90713 0.94372 0.78567 0.91592 1.21296 1.31953 1.13137 0.90274 0.92247 1.24877 0.94931 0.94982 0.98904 1.69872 1.36211 1.22531 1.23898 0.86536 0.79252 0.79510 0.81963 1.20256 1.21160 1.20250 1.47623 1.50962 1.11568 1.23525 1.21599 0.98395 0.83430 1.02859 1.15931 0.80253 0.85249 0.79179 1.91016 1.60097 1.14319 1.75003 1.42215 1.51195 1.15369 1.21132 1.20079 0.90189 0.87699 0.87489 1.71224 1.19163 1.12377 1.21573 1.22009 0.96261 0.90357 0.87757 1.20355 0.98363 0.95391 0.98488 1.21187 0.96118 0.98875 0.92808 1.20856 1.03870 0.91964 1.02803 1.21487 0.92386 1.00852 0.86119 1.47516 1.32485 1.09722 1.16391 1.78650 1.23104 1.07817 1.12163 0.95116 0.96904 0.88675 0.92589 0.93624 0.89380 0.93546 0.74534 0.82529 0.83444 0.82529 0.81510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.97 37.16 0.33 -3.23 16 2 C 0.27 7.16 2.64 -69.08 -0.18 6.97 16 3 H 0.07 2.01 6.90 -51.93 -0.36 1.65 16 4 C -0.53 -14.42 7.99 -34.44 -0.28 -14.70 16 5 H 0.06 1.59 7.33 -52.49 -0.38 1.20 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.32 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.60 -13.34 2.75 -181.00 -0.50 -13.84 16 13 C 0.08 1.37 9.20 59.85 0.55 1.92 16 14 C 0.69 15.93 8.25 -86.92 -0.72 15.22 16 15 O -0.53 -14.53 14.32 5.29 0.08 -14.45 16 16 N -0.64 -12.09 5.30 -17.31 -0.09 -12.18 16 17 C 0.51 9.99 8.77 -321.34 -2.82 7.17 16 18 N -0.51 -10.55 9.39 -13.12 -0.12 -10.67 16 19 C 0.29 4.64 7.87 -156.31 -1.23 3.41 16 20 C -0.10 -1.16 10.11 -39.40 -0.40 -1.56 16 21 C -0.06 -0.45 10.07 -39.56 -0.40 -0.84 16 22 C -0.17 -1.06 9.99 -39.91 -0.40 -1.46 16 23 C 0.12 1.08 11.20 -16.84 -0.19 0.89 16 24 N -0.29 -4.08 3.89 -12.35 -0.05 -4.12 16 25 N -0.38 -6.35 12.80 29.96 0.38 -5.96 16 26 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.56 7.02 -51.93 -0.36 1.19 16 32 H 0.05 0.63 6.36 -51.93 -0.33 0.30 16 33 H 0.42 6.28 6.55 -40.82 -0.27 6.02 16 34 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.16 0.36 8.06 -52.49 -0.42 -0.06 16 37 H 0.17 0.98 8.06 -52.48 -0.42 0.55 16 LS Contribution 315.71 15.07 4.76 4.76 Total: -1.00 -36.52 315.71 -9.85 -46.36 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.09 Total: 3.09 kcal Atomic # 6 Polarization: 21.32 SS G_CDS: -5.82 Total: 15.51 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: 0.25 Total: -71.48 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.08 Total: -14.45 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.52 -9.85 -46.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184377822.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.918 kcal (2) G-P(sol) polarization free energy of solvation -36.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds