Wall clock time and date at job start Tue Mar 31 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47321 * 2 1 4 4 C 1.50707 * 109.46951 * 239.99914 * 2 1 3 5 5 H 1.07998 * 120.00117 * 239.99689 * 4 2 1 6 6 C 1.37873 * 120.00045 * 60.00626 * 4 2 1 7 7 N 1.31516 * 119.99826 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00146 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47153 * 59.99159 * 8 6 4 10 10 H 1.48501 * 109.46840 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46518 * 299.99096 * 8 6 4 12 12 N 1.46496 * 109.47169 * 120.00327 * 2 1 3 13 13 C 1.46499 * 120.00281 * 59.99553 * 12 2 1 14 14 C 1.34778 * 119.99665 * 240.00185 * 12 2 1 15 15 O 1.21586 * 120.00390 * 359.97438 * 14 12 2 16 16 N 1.34776 * 119.99939 * 179.97438 * 14 12 2 17 17 C 1.39660 * 120.00052 * 179.97438 * 16 14 12 18 18 N 1.32939 * 125.26379 * 359.97438 * 17 16 14 19 19 C 1.32921 * 109.62780 * 179.97438 * 18 17 16 20 20 C 1.40623 * 132.76053 * 179.97438 * 19 18 17 21 21 C 1.36235 * 119.27023 * 180.02562 * 20 19 18 22 22 C 1.40225 * 119.60666 * 0.02562 * 21 20 19 23 23 C 1.35234 * 120.19585 * 359.97438 * 22 21 20 24 24 N 1.35859 * 120.58755 * 359.97438 * 23 22 21 25 25 N 1.31749 * 125.26205 * 180.02562 * 17 16 14 26 26 H 1.09001 * 109.46865 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46931 * 299.99983 * 1 2 3 28 28 H 1.09002 * 109.46946 * 60.00416 * 1 2 3 29 29 H 0.97005 * 120.00230 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47022 * 270.00172 * 13 12 2 31 31 H 1.09000 * 109.46767 * 30.00442 * 13 12 2 32 32 H 1.09006 * 109.46879 * 150.00482 * 13 12 2 33 33 H 0.97003 * 119.99977 * 359.97438 * 16 14 12 34 34 H 1.08001 * 120.36248 * 0.04603 * 20 19 18 35 35 H 1.08000 * 120.19474 * 180.27185 * 21 20 19 36 36 H 1.07996 * 119.89850 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.70612 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.8258 -2.5202 -4.0078 10 1 1.8260 -0.4205 -5.2205 11 1 3.8063 -1.1209 -4.0082 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0872 1.1283 1.8907 16 7 3.2420 -0.6708 3.1840 17 6 4.0454 0.0078 4.1030 18 7 4.4303 1.2757 3.9967 19 6 5.1848 1.6024 5.0411 20 6 5.8355 2.7920 5.4140 21 6 6.5544 2.8234 6.5708 22 6 6.6343 1.6729 7.3684 23 6 6.0011 0.5389 6.9917 24 7 5.2811 0.4989 5.8403 25 7 4.5397 -0.5100 5.2090 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7083 1.1610 -3.4844 30 1 0.7376 -2.1443 1.9993 31 1 1.5295 -2.5969 0.4708 32 1 2.4629 -2.5819 1.9864 33 1 3.0071 -1.5993 3.3378 34 1 5.7658 3.6710 4.7904 35 1 7.0565 3.7304 6.8738 36 1 7.2032 1.6924 8.2861 37 1 6.0676 -0.3426 7.6122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184377822.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:24 Heat of formation + Delta-G solvation = 100.208245 kcal Electronic energy + Delta-G solvation = -22373.827553 eV Core-core repulsion = 18961.080834 eV Total energy + Delta-G solvation = -3412.746719 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.70935 -41.34815 -38.92475 -37.26172 -35.89178 -34.71159 -34.40190 -31.75901 -30.91432 -30.61099 -27.72550 -27.30030 -25.16295 -24.43421 -23.84371 -22.36384 -21.04306 -19.54273 -18.69366 -18.53398 -17.91897 -17.59856 -17.50499 -16.95742 -16.40665 -16.20972 -15.94380 -15.49594 -14.98247 -14.52631 -14.25142 -13.78665 -13.56727 -13.50151 -13.36765 -13.14193 -12.89317 -12.74555 -12.65115 -12.27200 -12.23316 -12.19811 -12.11496 -11.57445 -11.46184 -11.20333 -10.80515 -10.51155 -9.98972 -9.40912 -9.18490 -8.13984 -6.30701 -0.19351 -0.07720 0.72570 1.42004 1.45310 1.47223 1.52588 1.64146 2.27016 2.41698 2.52373 2.73743 3.01586 3.14147 3.50761 3.88631 4.07900 4.24347 4.31614 4.43344 4.55899 4.65684 4.71962 4.89524 4.95158 4.98029 5.04579 5.11345 5.22058 5.32603 5.46008 5.49537 5.54660 5.63805 5.74578 5.92212 6.09339 6.15812 6.72933 6.77103 7.12975 7.35439 7.53973 8.90731 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.030749 B = 0.003457 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.379873 B = 8097.521268 C = 8357.242264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.280 3.720 3 H 0.009 0.991 4 C -0.542 4.542 5 H 0.063 0.937 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.968 3.032 9 H -0.260 1.260 10 H -0.283 1.283 11 H -0.280 1.280 12 N -0.606 5.606 13 C 0.076 3.924 14 C 0.693 3.307 15 O -0.588 6.588 16 N -0.627 5.627 17 C 0.487 3.513 18 N -0.583 5.583 19 C 0.265 3.735 20 C -0.138 4.138 21 C -0.027 4.027 22 C -0.138 4.138 23 C 0.095 3.905 24 N -0.286 5.286 25 N -0.382 5.382 26 H 0.051 0.949 27 H 0.018 0.982 28 H 0.071 0.929 29 H 0.265 0.735 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.431 0.569 34 H 0.156 0.844 35 H 0.197 0.803 36 H 0.214 0.786 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.915 -2.352 22.829 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.178 3.822 3 H 0.027 0.973 4 C -0.580 4.580 5 H 0.081 0.919 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.208 1.208 11 H -0.205 1.205 12 N -0.341 5.341 13 C -0.066 4.066 14 C 0.393 3.607 15 O -0.463 6.463 16 N -0.286 5.286 17 C 0.119 3.881 18 N -0.318 5.318 19 C 0.014 3.986 20 C -0.160 4.160 21 C -0.052 4.052 22 C -0.159 4.159 23 C -0.033 4.033 24 N -0.061 5.061 25 N -0.225 5.225 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.273 0.727 34 H 0.174 0.826 35 H 0.214 0.786 36 H 0.231 0.769 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 10.598 -2.036 22.221 24.703 hybrid contribution -0.132 -0.603 -1.182 1.334 sum 10.466 -2.640 21.039 23.646 Atomic orbital electron populations 1.21887 0.96730 1.00393 0.99988 1.18527 0.91621 0.91931 0.80118 0.97291 1.21555 1.32153 1.13298 0.91014 0.91917 1.25740 0.95009 0.95637 1.01990 1.70022 1.37151 1.23816 1.24588 0.85472 0.78244 0.79060 0.77989 1.18442 1.20796 1.20526 1.47489 1.50768 1.13458 1.22382 1.21885 1.00905 0.80327 1.03501 1.16030 0.80014 0.84732 0.79952 1.90966 1.61996 1.16853 1.76474 1.41687 1.51044 1.15754 1.20135 1.20204 0.91460 0.88055 0.88412 1.71043 1.22130 1.13649 1.24958 1.22447 0.96614 0.92078 0.87460 1.20680 1.00319 0.94109 1.00910 1.21864 0.92502 1.00876 0.89982 1.21661 1.01001 0.89882 1.03396 1.22493 0.92220 1.03617 0.84923 1.47658 1.32472 1.08577 1.17414 1.78458 1.23665 1.08954 1.11390 0.93029 0.96317 0.91040 0.92536 0.91089 0.89919 0.90197 0.72697 0.82589 0.78562 0.76885 0.78352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.97 71.98 0.65 -5.92 16 2 C 0.28 15.32 2.64 44.25 0.12 15.43 16 3 H 0.01 0.60 6.90 -2.39 -0.02 0.58 16 4 C -0.54 -30.36 7.99 25.60 0.20 -30.15 16 5 H 0.06 3.39 7.33 -2.91 -0.02 3.37 16 6 C 0.02 0.90 5.30 84.65 0.45 1.34 16 7 N -0.92 -54.08 11.32 21.45 0.24 -53.83 16 8 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 9 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 N -0.61 -27.82 2.75 -844.84 -2.33 -30.14 16 13 C 0.08 2.51 9.20 127.77 1.18 3.68 16 14 C 0.69 33.67 8.25 179.05 1.48 35.15 16 15 O -0.59 -34.69 14.32 -3.99 -0.06 -34.75 16 16 N -0.63 -24.72 5.30 -326.94 -1.73 -26.45 16 17 C 0.49 19.98 8.77 260.97 2.29 22.27 16 18 N -0.58 -25.81 9.39 -195.43 -1.84 -27.64 16 19 C 0.27 8.71 7.87 134.08 1.06 9.77 16 20 C -0.14 -2.96 10.11 22.39 0.23 -2.73 16 21 C -0.03 -0.25 10.07 22.29 0.22 -0.02 16 22 C -0.14 -0.89 9.99 22.06 0.22 -0.67 16 23 C 0.10 1.36 11.20 83.38 0.93 2.29 16 24 N -0.29 -8.00 3.89 -192.98 -0.75 -8.75 16 25 N -0.38 -13.16 12.80 -59.11 -0.76 -13.92 16 26 H 0.05 2.30 7.67 -2.39 -0.02 2.28 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 29 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 2.85 7.02 -2.39 -0.02 2.83 16 32 H 0.08 2.08 6.36 -2.38 -0.02 2.06 16 33 H 0.43 13.19 6.55 -92.71 -0.61 12.59 16 34 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.20 -0.01 8.06 -2.91 -0.02 -0.03 16 36 H 0.21 -0.87 8.06 -2.91 -0.02 -0.89 16 37 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -89.46 315.71 4.34 -85.13 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.51 Total: 13.93 kcal Atomic # 6 Polarization: 41.42 SS G_CDS: 9.02 Total: 50.44 kcal Atomic # 7 Polarization: -153.58 SS G_CDS: -7.16 Total: -160.74 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.06 Total: -34.75 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -89.46 4.34 -85.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184377822.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.333 kcal (2) G-P(sol) polarization free energy of solvation -89.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds