Wall clock time and date at job start Tue Mar 31 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47202 * 85.07980 * 3 2 1 5 5 H 1.48504 * 109.46890 * 325.07904 * 3 2 1 6 6 H 1.48497 * 109.46660 * 205.08285 * 3 2 1 7 7 C 1.37873 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00057 * 172.55182 * 7 2 1 9 9 C 1.50697 * 120.00023 * 352.55704 * 7 2 1 10 10 H 1.08994 * 109.50868 * 56.29914 * 9 7 2 11 11 C 1.53118 * 109.50236 * 296.21973 * 9 7 2 12 12 C 1.53120 * 109.16113 * 182.40641 * 11 9 7 13 13 C 1.53039 * 109.27944 * 57.65456 * 12 11 9 14 14 N 1.46836 * 109.52102 * 300.81951 * 13 12 11 15 15 C 1.46901 * 110.99741 * 185.83707 * 14 13 12 16 16 C 1.50707 * 109.47138 * 66.04999 * 15 14 13 17 17 C 1.38244 * 119.92357 * 269.72561 * 16 15 14 18 18 C 1.38245 * 120.14201 * 179.72644 * 17 16 15 19 19 C 1.38545 * 120.02466 * 0.57983 * 18 17 16 20 20 C 1.39271 * 119.82906 * 359.67956 * 19 18 17 21 21 C 1.38230 * 119.92742 * 89.99572 * 16 15 14 22 22 O 1.36500 * 108.63733 * 180.02562 * 20 19 18 23 23 C 1.43986 * 105.48686 * 342.71743 * 22 20 19 24 24 O 1.36502 * 131.53436 * 179.69453 * 19 18 17 25 25 C 1.46848 * 111.19808 * 61.74573 * 14 13 12 26 26 H 0.97003 * 120.00213 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.52478 * 302.31061 * 11 9 7 28 28 H 1.08999 * 109.52605 * 62.43643 * 11 9 7 29 29 H 1.09004 * 109.50177 * 177.59802 * 12 11 9 30 30 H 1.08993 * 109.50369 * 297.67297 * 12 11 9 31 31 H 1.09003 * 109.46047 * 60.84046 * 13 12 11 32 32 H 1.08997 * 109.46222 * 180.80171 * 13 12 11 33 33 H 1.08998 * 109.47527 * 186.04821 * 15 14 13 34 34 H 1.08997 * 109.47739 * 306.05053 * 15 14 13 35 35 H 1.08007 * 119.93808 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.98914 * 180.25269 * 18 17 16 37 37 H 1.08005 * 119.98675 * 0.02562 * 21 16 15 38 38 H 1.09003 * 110.57005 * 268.55478 * 23 22 20 39 39 H 1.08998 * 110.70004 * 145.74729 * 23 22 20 40 40 H 1.09004 * 109.46623 * 178.23823 * 25 14 13 41 41 H 1.09002 * 109.46414 * 58.26861 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3926 2.1065 1.3949 5 1 1.5024 2.6204 -0.8015 6 1 3.5947 1.4124 -0.5935 7 6 2.0045 -1.1940 0.0005 8 1 3.0777 -1.1980 -0.1207 9 6 1.2606 -2.4935 0.1702 10 1 0.4934 -2.5769 -0.5995 11 6 0.6036 -2.5297 1.5528 12 6 -0.0993 -3.8771 1.7401 13 6 0.9194 -5.0064 1.5698 14 7 1.5190 -4.9287 0.2317 15 6 2.3996 -6.0777 -0.0181 16 6 1.5773 -7.3397 -0.0664 17 6 1.3548 -8.0626 1.0908 18 6 0.5965 -9.2178 1.0526 19 6 0.0674 -9.6604 -0.1489 20 6 0.2960 -8.9350 -1.3156 21 6 1.0519 -7.7748 -1.2687 22 8 -0.3240 -9.5700 -2.3527 23 6 -0.5895 -10.9049 -1.8827 24 8 -0.6957 -10.7500 -0.4552 25 6 2.2399 -3.6630 0.0455 26 1 -0.4850 0.8401 -0.0004 27 1 1.3662 -2.4066 2.3218 28 1 -0.1258 -1.7234 1.6307 29 1 -0.5328 -3.9256 2.7390 30 1 -0.8882 -3.9826 0.9955 31 1 1.7002 -4.9079 2.3240 32 1 0.4193 -5.9676 1.6885 33 1 2.9130 -5.9419 -0.9700 34 1 3.1344 -6.1534 0.7834 35 1 1.7710 -7.7220 2.0274 36 1 0.4208 -9.7784 1.9588 37 1 1.2313 -7.2106 -2.1720 38 1 0.2355 -11.5710 -2.1352 39 1 -1.5246 -11.2807 -2.2979 40 1 2.6989 -3.6484 -0.9431 41 1 3.0145 -3.5708 0.8068 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259215505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:53 Heat of formation + Delta-G solvation = -38.161914 kcal Electronic energy + Delta-G solvation = -22839.030553 eV Core-core repulsion = 19491.531247 eV Total energy + Delta-G solvation = -3347.499307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.22063 -38.96726 -37.38251 -36.36285 -33.84244 -32.10056 -30.61231 -30.27168 -29.56004 -26.44586 -25.33662 -24.87265 -23.01927 -22.51568 -21.66466 -20.86641 -18.63779 -17.99488 -17.59381 -17.39847 -16.38865 -16.20677 -15.18777 -14.74294 -14.54040 -14.50283 -13.98002 -13.87805 -13.80712 -13.26874 -13.07719 -13.01788 -12.85940 -12.52358 -12.29058 -11.84840 -11.70953 -11.37238 -11.06320 -10.95647 -10.86388 -10.65152 -10.63178 -10.10558 -9.87390 -9.45512 -9.07739 -8.81808 -8.71198 -8.29238 -8.09406 -7.66116 -5.98200 -4.01079 1.08172 1.20749 2.66294 3.31737 3.32638 3.39189 3.41587 3.50561 4.42787 4.44083 4.48311 4.62776 4.69848 4.93088 4.98362 5.08667 5.19150 5.33849 5.42261 5.58904 5.67181 5.82150 5.84552 5.97860 6.06121 6.08194 6.18398 6.26662 6.33032 6.38230 6.50203 6.56547 6.70674 6.73679 6.95374 7.06220 7.21109 7.34800 7.64486 7.75683 7.79426 8.04985 8.14029 8.48742 9.03378 9.62299 11.10404 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.003263 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.268566 B = 8579.210670 C = 8744.461735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.053 0.947 9 C 0.054 3.946 10 H 0.040 0.960 11 C -0.106 4.106 12 C -0.117 4.117 13 C 0.059 3.941 14 N -0.533 5.533 15 C 0.093 3.907 16 C -0.054 4.054 17 C -0.105 4.105 18 C -0.100 4.100 19 C 0.021 3.979 20 C 0.029 3.971 21 C -0.078 4.078 22 O -0.309 6.309 23 C 0.214 3.786 24 O -0.313 6.313 25 C 0.068 3.932 26 H 0.259 0.741 27 H 0.031 0.969 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.080 0.920 39 H 0.128 0.872 40 H 0.061 0.939 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 -20.189 0.476 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.137 4.137 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.058 0.942 11 C -0.144 4.144 12 C -0.155 4.155 13 C -0.069 4.069 14 N -0.257 5.257 15 C -0.035 4.035 16 C -0.055 4.055 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.023 4.023 20 C -0.015 4.015 21 C -0.097 4.097 22 O -0.226 6.226 23 C 0.102 3.898 24 O -0.229 6.229 25 C -0.058 4.058 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.098 0.902 39 H 0.146 0.854 40 H 0.079 0.921 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.861 -20.145 0.033 20.164 hybrid contribution 0.922 0.734 0.491 1.277 sum 1.783 -19.411 0.524 19.500 Atomic orbital electron populations 1.69963 1.05863 1.26380 1.50223 1.24930 0.94758 0.98917 0.95103 0.86663 0.80020 0.83897 0.77904 1.20818 1.21312 1.19936 1.21126 0.93528 0.90886 1.50001 0.92824 1.18669 0.93775 0.90243 0.93804 0.94205 1.21597 0.99275 0.94592 0.98985 1.21654 0.97918 0.96261 0.99660 1.22118 0.97027 0.99142 0.88584 1.62028 1.33521 1.01741 1.28443 1.21007 0.92806 0.87934 1.01743 1.19609 0.98218 0.95909 0.91719 1.20864 0.99111 0.93880 0.98513 1.19989 0.98926 0.97967 0.95011 1.19770 0.97022 0.89923 0.95553 1.19771 0.98726 0.97315 0.85659 1.19960 0.96524 0.93706 0.99510 1.87367 1.74239 1.24757 1.36192 1.25557 1.03085 0.84514 0.76683 1.87330 1.65617 1.45720 1.24249 1.22339 0.96096 0.88246 0.99131 0.93077 0.94990 0.90522 0.93544 0.92013 0.95881 0.91863 0.89889 0.94080 0.84713 0.84965 0.84491 0.90211 0.85420 0.92063 0.96211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 11.97 55.43 0.66 -24.78 16 2 C 0.06 1.79 5.24 -17.82 -0.09 1.69 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.04 8.51 -34.44 -0.29 -14.33 16 8 H 0.05 1.44 7.76 -52.49 -0.41 1.03 16 9 C 0.05 1.33 2.15 -91.69 -0.20 1.14 16 10 H 0.04 1.11 8.13 -51.93 -0.42 0.69 16 11 C -0.11 -2.48 5.07 -26.61 -0.13 -2.61 16 12 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 13 C 0.06 1.01 5.17 -3.84 -0.02 0.99 16 14 N -0.53 -9.50 4.65 -236.11 -1.10 -10.60 16 15 C 0.09 1.31 5.12 -4.97 -0.03 1.29 16 16 C -0.05 -0.71 4.89 -104.62 -0.51 -1.22 16 17 C -0.10 -1.23 7.88 -39.58 -0.31 -1.55 16 18 C -0.10 -1.16 10.06 -39.47 -0.40 -1.56 16 19 C 0.02 0.28 7.15 -39.08 -0.28 0.00 16 20 C 0.03 0.40 7.15 -39.08 -0.28 0.12 16 21 C -0.08 -1.06 9.71 -39.47 -0.38 -1.45 16 22 O -0.31 -4.00 11.40 -45.69 -0.52 -4.52 16 23 C 0.21 1.97 8.89 101.05 0.90 2.87 16 24 O -0.31 -3.81 11.40 -45.70 -0.52 -4.33 16 25 C 0.07 1.41 4.68 -3.83 -0.02 1.39 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 2.00 6.75 -51.93 -0.35 1.65 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.98 5.77 -51.93 -0.30 0.68 16 33 H 0.08 1.11 7.92 -51.93 -0.41 0.70 16 34 H 0.04 0.54 8.06 -51.93 -0.42 0.12 16 35 H 0.14 1.36 7.97 -52.48 -0.42 0.94 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.24 8.01 -51.93 -0.42 0.82 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -30.17 329.83 -9.82 -39.99 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.08 Total: -1.22 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -2.21 Total: -15.66 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.43 Total: -35.38 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -1.04 Total: -8.85 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.17 -9.82 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259215505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.825 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds