Wall clock time and date at job start Tue Mar 31 2020 06:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47202 * 85.07980 * 3 2 1 5 5 H 1.48504 * 109.46890 * 325.07904 * 3 2 1 6 6 H 1.48497 * 109.46660 * 205.08285 * 3 2 1 7 7 C 1.37873 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00057 * 172.55182 * 7 2 1 9 9 C 1.50697 * 120.00023 * 352.55704 * 7 2 1 10 10 H 1.08994 * 109.50868 * 56.29914 * 9 7 2 11 11 C 1.53118 * 109.50236 * 296.21973 * 9 7 2 12 12 C 1.53120 * 109.16113 * 182.40641 * 11 9 7 13 13 C 1.53039 * 109.27944 * 57.65456 * 12 11 9 14 14 N 1.46836 * 109.52102 * 300.81951 * 13 12 11 15 15 C 1.46901 * 110.99741 * 185.83707 * 14 13 12 16 16 C 1.50707 * 109.47138 * 66.04999 * 15 14 13 17 17 C 1.38244 * 119.92357 * 269.72561 * 16 15 14 18 18 C 1.38245 * 120.14201 * 179.72644 * 17 16 15 19 19 C 1.38545 * 120.02466 * 0.57983 * 18 17 16 20 20 C 1.39271 * 119.82906 * 359.67956 * 19 18 17 21 21 C 1.38230 * 119.92742 * 89.99572 * 16 15 14 22 22 O 1.36500 * 108.63733 * 180.02562 * 20 19 18 23 23 C 1.43986 * 105.48686 * 342.71743 * 22 20 19 24 24 O 1.36502 * 131.53436 * 179.69453 * 19 18 17 25 25 C 1.46848 * 111.19808 * 61.74573 * 14 13 12 26 26 H 0.97003 * 120.00213 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.52478 * 302.31061 * 11 9 7 28 28 H 1.08999 * 109.52605 * 62.43643 * 11 9 7 29 29 H 1.09004 * 109.50177 * 177.59802 * 12 11 9 30 30 H 1.08993 * 109.50369 * 297.67297 * 12 11 9 31 31 H 1.09003 * 109.46047 * 60.84046 * 13 12 11 32 32 H 1.08997 * 109.46222 * 180.80171 * 13 12 11 33 33 H 1.08998 * 109.47527 * 186.04821 * 15 14 13 34 34 H 1.08997 * 109.47739 * 306.05053 * 15 14 13 35 35 H 1.08007 * 119.93808 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.98914 * 180.25269 * 18 17 16 37 37 H 1.08005 * 119.98675 * 0.02562 * 21 16 15 38 38 H 1.09003 * 110.57005 * 268.55478 * 23 22 20 39 39 H 1.08998 * 110.70004 * 145.74729 * 23 22 20 40 40 H 1.09004 * 109.46623 * 178.23823 * 25 14 13 41 41 H 1.09002 * 109.46414 * 58.26861 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3926 2.1065 1.3949 5 1 1.5024 2.6204 -0.8015 6 1 3.5947 1.4124 -0.5935 7 6 2.0045 -1.1940 0.0005 8 1 3.0777 -1.1980 -0.1207 9 6 1.2606 -2.4935 0.1702 10 1 0.4934 -2.5769 -0.5995 11 6 0.6036 -2.5297 1.5528 12 6 -0.0993 -3.8771 1.7401 13 6 0.9194 -5.0064 1.5698 14 7 1.5190 -4.9287 0.2317 15 6 2.3996 -6.0777 -0.0181 16 6 1.5773 -7.3397 -0.0664 17 6 1.3548 -8.0626 1.0908 18 6 0.5965 -9.2178 1.0526 19 6 0.0674 -9.6604 -0.1489 20 6 0.2960 -8.9350 -1.3156 21 6 1.0519 -7.7748 -1.2687 22 8 -0.3240 -9.5700 -2.3527 23 6 -0.5895 -10.9049 -1.8827 24 8 -0.6957 -10.7500 -0.4552 25 6 2.2399 -3.6630 0.0455 26 1 -0.4850 0.8401 -0.0004 27 1 1.3662 -2.4066 2.3218 28 1 -0.1258 -1.7234 1.6307 29 1 -0.5328 -3.9256 2.7390 30 1 -0.8882 -3.9826 0.9955 31 1 1.7002 -4.9079 2.3240 32 1 0.4193 -5.9676 1.6885 33 1 2.9130 -5.9419 -0.9700 34 1 3.1344 -6.1534 0.7834 35 1 1.7710 -7.7220 2.0274 36 1 0.4208 -9.7784 1.9588 37 1 1.2313 -7.2106 -2.1720 38 1 0.2355 -11.5710 -2.1352 39 1 -1.5246 -11.2807 -2.2979 40 1 2.6989 -3.6484 -0.9431 41 1 3.0145 -3.5708 0.8068 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259215505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:52 Heat of formation + Delta-G solvation = -56.441610 kcal Electronic energy + Delta-G solvation = -22839.823221 eV Core-core repulsion = 19491.531247 eV Total energy + Delta-G solvation = -3348.291974 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.09835 -40.22578 -38.64119 -37.25842 -35.55152 -33.77158 -31.77111 -31.64692 -30.93209 -27.44500 -26.87752 -26.28818 -24.01066 -23.85211 -23.18682 -22.19330 -20.33225 -18.88773 -18.60103 -18.30508 -18.26584 -17.12452 -16.77586 -16.33697 -15.85249 -15.43627 -15.20065 -15.10216 -14.87021 -14.80480 -14.36383 -14.28433 -14.01918 -13.94590 -13.64239 -13.37805 -13.00935 -12.80566 -12.69355 -12.52871 -12.45075 -11.99844 -11.88019 -11.69757 -11.62746 -11.35129 -10.80941 -10.63968 -10.38201 -9.80472 -9.15471 -8.92893 -8.09144 -6.19254 0.11874 0.26560 1.42118 1.43154 1.53342 1.82175 2.43181 2.51698 2.56546 3.20861 3.30888 3.52052 3.81784 3.83929 4.04323 4.10060 4.21971 4.27801 4.29601 4.32284 4.45148 4.48759 4.63167 4.69576 4.73540 4.82477 4.93393 4.99535 5.06471 5.11305 5.13641 5.21143 5.27189 5.41239 5.43866 5.49492 5.59978 5.66469 5.98299 6.10825 6.15256 6.20908 6.38287 6.49286 6.94814 7.47945 8.98908 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.003263 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.268566 B = 8579.210670 C = 8744.461735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.051 3.949 10 H -0.004 1.004 11 C -0.099 4.099 12 C -0.112 4.112 13 C 0.065 3.935 14 N -0.548 5.548 15 C 0.097 3.903 16 C -0.063 4.063 17 C -0.099 4.099 18 C -0.098 4.098 19 C 0.013 3.987 20 C 0.012 3.988 21 C -0.092 4.092 22 O -0.330 6.330 23 C 0.205 3.795 24 O -0.324 6.324 25 C 0.083 3.917 26 H 0.259 0.741 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.158 0.842 40 H 0.058 0.942 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 -21.863 1.668 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.032 3.968 10 H 0.014 0.986 11 C -0.137 4.137 12 C -0.150 4.150 13 C -0.063 4.063 14 N -0.273 5.273 15 C -0.030 4.030 16 C -0.064 4.064 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.032 4.032 20 C -0.032 4.032 21 C -0.112 4.112 22 O -0.247 6.247 23 C 0.094 3.906 24 O -0.241 6.241 25 C -0.044 4.044 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.149 0.851 38 H 0.122 0.878 39 H 0.175 0.825 40 H 0.077 0.923 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.884 -21.845 1.221 21.960 hybrid contribution 0.558 1.168 0.064 1.296 sum 2.442 -20.677 1.285 20.861 Atomic orbital electron populations 1.70105 1.07354 1.27080 1.51196 1.25725 0.95530 1.02380 0.94862 0.85644 0.78944 0.79638 0.78038 1.20196 1.21226 1.19024 1.21532 0.93766 0.92317 1.49676 0.92755 1.18590 0.93488 0.91480 0.93235 0.98624 1.21407 0.98455 0.95817 0.98020 1.21580 0.97901 0.95024 1.00459 1.22088 0.96732 0.98933 0.88508 1.61900 1.34420 1.01699 1.29241 1.21014 0.92690 0.86713 1.02617 1.19542 0.98739 0.95857 0.92212 1.21116 0.98403 0.93455 0.98737 1.20322 0.98012 0.97873 0.95458 1.20060 0.97118 0.90119 0.95859 1.19933 0.99236 0.97687 0.86391 1.20044 0.97221 0.94090 0.99808 1.87329 1.74284 1.26415 1.36649 1.26078 1.05746 0.83344 0.75424 1.87301 1.65573 1.45393 1.25807 1.21978 0.94929 0.88345 0.99160 0.93176 0.94958 0.94182 0.91132 0.93893 0.94502 0.89505 0.89613 0.92133 0.82372 0.82430 0.85065 0.87793 0.82453 0.92329 0.95794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.41 11.97 21.45 0.26 -54.15 16 2 C 0.01 0.77 5.24 84.65 0.44 1.22 16 3 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.53 -29.58 8.51 25.60 0.22 -29.37 16 8 H 0.05 2.92 7.76 -2.91 -0.02 2.90 16 9 C 0.05 2.59 2.15 -11.49 -0.02 2.56 16 10 H 0.00 -0.26 8.13 -2.39 -0.02 -0.28 16 11 C -0.10 -4.68 5.07 30.67 0.16 -4.52 16 12 C -0.11 -4.27 6.09 30.65 0.19 -4.09 16 13 C 0.06 2.07 5.17 86.33 0.45 2.51 16 14 N -0.55 -18.89 4.65 -900.93 -4.19 -23.08 16 15 C 0.10 2.54 5.12 85.56 0.44 2.98 16 16 C -0.06 -1.54 4.89 -19.86 -0.10 -1.64 16 17 C -0.10 -2.00 7.88 22.27 0.18 -1.83 16 18 C -0.10 -1.99 10.06 22.34 0.22 -1.77 16 19 C 0.01 0.31 7.15 22.59 0.16 0.47 16 20 C 0.01 0.31 7.15 22.59 0.16 0.47 16 21 C -0.09 -2.47 9.71 22.34 0.22 -2.26 16 22 O -0.33 -8.31 11.40 -76.05 -0.87 -9.17 16 23 C 0.20 3.41 8.89 113.37 1.01 4.42 16 24 O -0.32 -7.29 11.40 -76.08 -0.87 -8.16 16 25 C 0.08 3.40 4.68 86.33 0.40 3.81 16 26 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 27 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 2.16 6.75 -2.39 -0.02 2.14 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 2.39 5.77 -2.39 -0.01 2.38 16 33 H 0.09 2.19 7.92 -2.39 -0.02 2.17 16 34 H 0.06 1.38 8.06 -2.39 -0.02 1.37 16 35 H 0.16 2.45 7.97 -2.91 -0.02 2.43 16 36 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.13 3.51 8.06 -2.91 -0.02 3.48 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.16 1.55 8.14 -2.39 -0.02 1.54 16 40 H 0.06 2.38 8.01 -2.38 -0.02 2.36 16 41 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -66.93 329.83 1.50 -65.43 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.01 Total: 10.24 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 4.12 Total: -27.02 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -3.93 Total: -77.23 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -1.73 Total: -17.33 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.93 1.50 -65.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259215505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.988 kcal (2) G-P(sol) polarization free energy of solvation -66.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds