Wall clock time and date at job start Tue Mar 31 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46968 * 109.70452 * 3 2 1 5 5 C 1.53003 * 109.47072 * 179.97438 * 4 3 2 6 6 N 1.46492 * 109.47193 * 180.02562 * 5 4 3 7 7 C 1.40002 * 120.00165 * 180.02562 * 6 5 4 8 8 C 1.38650 * 120.09787 * 359.72509 * 7 6 5 9 9 C 1.38284 * 120.00206 * 179.70196 * 8 7 6 10 10 C 1.38264 * 120.20802 * 0.59458 * 9 8 7 11 11 C 1.38254 * 120.19576 * 359.68358 * 10 9 8 12 12 C 1.38733 * 119.99132 * 0.02562 * 11 10 9 13 13 S 1.76198 * 120.10023 * 179.97438 * 12 11 10 14 14 C 1.81404 * 103.00017 * 354.28206 * 13 12 11 15 15 H 1.09007 * 109.46943 * 52.12605 * 14 13 12 16 16 C 1.52995 * 109.47146 * 172.12148 * 14 13 12 17 17 C 1.50697 * 109.47151 * 292.12616 * 14 13 12 18 18 H 1.07998 * 120.00122 * 359.97438 * 17 14 13 19 19 C 1.37875 * 119.99840 * 179.97438 * 17 14 13 20 20 N 1.31512 * 120.00223 * 359.97438 * 19 17 14 21 21 Si 1.86804 * 120.00035 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.46781 * 89.99958 * 21 19 17 23 23 H 1.48499 * 109.47202 * 209.99973 * 21 19 17 24 24 H 1.48494 * 109.47122 * 330.00558 * 21 19 17 25 25 H 4.44645 * 5.63372 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.46863 * 349.70530 * 3 2 1 27 27 H 1.08997 * 109.46860 * 229.70839 * 3 2 1 28 28 H 1.08999 * 109.46591 * 60.00635 * 4 3 2 29 29 H 1.08997 * 109.47646 * 299.99906 * 4 3 2 30 30 H 1.08997 * 109.46964 * 300.00514 * 5 4 3 31 31 H 1.09001 * 109.46655 * 60.00141 * 5 4 3 32 32 H 0.97004 * 120.00186 * 0.02562 * 6 5 4 33 33 H 1.08002 * 119.99741 * 359.97438 * 8 7 6 34 34 H 1.08003 * 119.89878 * 180.32461 * 9 8 7 35 35 H 1.07996 * 119.90810 * 179.70350 * 10 9 8 36 36 H 1.08003 * 120.00299 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.47430 * 186.03246 * 16 14 13 38 38 H 1.08998 * 109.47378 * 306.03533 * 16 14 13 39 39 H 1.09003 * 109.47260 * 66.03561 * 16 14 13 40 40 H 0.97001 * 119.99928 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4873 -1.3581 5 6 4.6858 0.4886 -1.3579 6 7 5.1739 0.9550 -2.6579 7 6 6.5503 1.0420 -2.8988 8 6 7.4533 0.6926 -1.9063 9 6 8.8124 0.7734 -2.1485 10 6 9.2756 1.2138 -3.3745 11 6 8.3827 1.5698 -4.3681 12 6 7.0174 1.4862 -4.1362 13 16 5.8769 1.9399 -5.4003 14 6 6.9533 2.5957 -6.7049 15 1 7.7363 1.8710 -6.9284 16 6 6.1260 2.8576 -7.9650 17 6 7.5800 3.8844 -6.2385 18 1 7.3531 4.2706 -5.2558 19 6 8.4430 4.5705 -7.0664 20 7 8.7197 4.1001 -8.2629 21 14 9.2192 6.1684 -6.4886 22 1 10.5042 5.8753 -5.8042 23 1 9.4708 7.0479 -7.6584 24 1 8.3000 6.8520 -5.5438 25 1 -1.0500 -0.0002 0.0000 26 1 3.0098 -1.0103 0.1837 27 1 3.0090 0.6654 0.7839 28 1 2.7920 1.4982 -1.5416 29 1 2.7928 -0.1775 -2.1419 30 1 5.0484 1.1535 -0.5741 31 1 5.0499 -0.5223 -1.1740 32 1 4.5435 1.2037 -3.3520 33 1 7.0952 0.3531 -0.9457 34 1 9.5143 0.4958 -1.3760 35 1 10.3380 1.2796 -3.5567 36 1 8.7480 1.9130 -5.3248 37 1 6.7881 3.1493 -8.7802 38 1 5.5875 1.9510 -8.2409 39 1 5.4130 3.6591 -7.7715 40 1 9.3271 4.5826 -8.8453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270907821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:37 Heat of formation + Delta-G solvation = 47.660835 kcal Electronic energy + Delta-G solvation = -19634.711835 eV Core-core repulsion = 16733.686953 eV Total energy + Delta-G solvation = -2901.024882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.15132 -37.54942 -36.14110 -35.35742 -32.62250 -32.38972 -31.65947 -29.76148 -27.38495 -26.73292 -24.04633 -23.68574 -22.46111 -21.92183 -18.99764 -18.60119 -18.36534 -17.39139 -17.17959 -16.59780 -16.58469 -15.75567 -15.18962 -15.03533 -14.91922 -14.74561 -14.67097 -14.31604 -13.68239 -13.61480 -13.44695 -13.34495 -12.88807 -12.74154 -12.44005 -12.37102 -12.32623 -12.24087 -12.11749 -11.55050 -11.28434 -11.14690 -10.98168 -10.88641 -10.82695 -10.50595 -10.28082 -8.71331 -8.22355 -7.71789 -6.33525 0.54536 0.79280 1.11540 1.38148 1.39577 1.49504 1.85411 1.93559 1.95279 2.39332 2.63654 3.03232 3.09653 3.50985 4.05766 4.09656 4.13653 4.28470 4.35171 4.56749 4.61873 4.65391 4.70605 4.74585 4.76020 4.84187 4.88957 4.91832 5.16888 5.19236 5.21132 5.23883 5.34617 5.38828 5.58531 5.60834 5.76976 5.83112 6.04564 6.06772 6.52908 6.68144 6.72644 6.78622 7.32683 8.84913 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.003845 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.270231 B = 7280.828192 C = 8006.616892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.217 4.217 3 C -0.005 4.005 4 C -0.118 4.118 5 C 0.127 3.873 6 N -0.750 5.750 7 C 0.218 3.782 8 C -0.190 4.190 9 C -0.078 4.078 10 C -0.179 4.179 11 C -0.091 4.091 12 C -0.155 4.155 13 S -0.198 6.198 14 C 0.097 3.903 15 H 0.022 0.978 16 C -0.114 4.114 17 C -0.520 4.520 18 H 0.050 0.950 19 C 0.028 3.972 20 N -0.911 5.911 21 Si 0.952 3.048 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.273 1.273 25 H 0.240 0.760 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.396 0.604 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 -8.782 16.240 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.217 4.217 3 C -0.042 4.042 4 C -0.156 4.156 5 C 0.004 3.996 6 N -0.380 5.380 7 C 0.109 3.891 8 C -0.214 4.214 9 C -0.099 4.099 10 C -0.200 4.200 11 C -0.115 4.115 12 C -0.272 4.272 13 S 0.045 5.955 14 C -0.031 4.031 15 H 0.040 0.960 16 C -0.174 4.174 17 C -0.559 4.559 18 H 0.068 0.932 19 C -0.173 4.173 20 N -0.549 5.549 21 Si 0.778 3.222 22 H -0.200 1.200 23 H -0.203 1.203 24 H -0.198 1.198 25 H 0.256 0.744 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.232 0.768 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.144 0.856 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.974 -8.883 16.154 20.504 hybrid contribution 1.425 1.283 -0.749 2.058 sum -7.550 -7.600 15.405 18.764 Atomic orbital electron populations 1.25708 0.97059 1.00662 0.99895 1.23710 0.95645 1.01010 1.01326 1.18663 0.83941 1.04148 0.97431 1.21594 0.94000 1.02162 0.97832 1.21444 0.93615 1.00032 0.84486 1.44885 1.02474 1.73965 1.16707 1.17543 0.85336 0.94930 0.91284 1.20801 0.92571 1.08909 0.99119 1.21203 0.95375 0.96898 0.96379 1.21034 0.99329 1.05142 0.94544 1.21235 0.92189 0.97892 1.00189 1.21179 0.96684 1.11905 0.97408 1.84008 1.18112 1.77511 1.15860 1.20802 0.93716 0.97430 0.91192 0.96013 1.21480 0.98659 0.98739 0.98490 1.21282 1.26897 1.06690 1.01037 0.93187 1.25612 0.96441 1.00439 0.94852 1.69967 1.35884 1.40411 1.08681 0.85630 0.78846 0.79772 0.77980 1.20000 1.20341 1.19811 0.74362 0.87660 0.87867 0.91894 0.91584 0.91143 0.90723 0.76845 0.82989 0.82856 0.85606 0.87476 0.90453 0.94297 0.94539 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.51 19.25 74.32 1.43 -2.08 16 2 C -0.22 -3.88 13.34 31.13 0.42 -3.46 16 3 C 0.00 -0.07 5.70 28.79 0.16 0.10 16 4 C -0.12 -1.99 5.28 30.60 0.16 -1.83 16 5 C 0.13 2.38 4.92 86.38 0.42 2.81 16 6 N -0.75 -21.30 5.68 -338.84 -1.93 -23.23 16 7 C 0.22 7.40 6.66 38.24 0.25 7.66 16 8 C -0.19 -5.30 9.31 22.38 0.21 -5.09 16 9 C -0.08 -2.17 10.04 22.29 0.22 -1.95 16 10 C -0.18 -6.24 10.04 22.28 0.22 -6.02 16 11 C -0.09 -3.91 8.80 22.39 0.20 -3.72 16 12 C -0.16 -6.48 6.05 22.70 0.14 -6.34 16 13 S -0.20 -8.80 19.77 -56.49 -1.12 -9.91 16 14 C 0.10 4.95 2.01 29.85 0.06 5.01 16 15 H 0.02 1.22 7.00 -2.39 -0.02 1.21 16 16 C -0.11 -5.55 8.88 71.98 0.64 -4.91 16 17 C -0.52 -28.50 6.90 25.60 0.18 -28.33 16 18 H 0.05 2.85 7.71 -2.91 -0.02 2.83 16 19 C 0.03 1.52 5.30 84.65 0.45 1.97 16 20 N -0.91 -50.92 11.39 21.45 0.24 -50.68 16 21 Si 0.95 43.59 29.54 68.60 2.03 45.62 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H 0.24 2.20 7.80 -4.42 -0.03 2.16 16 26 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.18 7.94 -2.39 -0.02 1.16 16 31 H 0.07 1.19 7.96 -2.39 -0.02 1.17 16 32 H 0.40 12.18 7.02 -92.71 -0.65 11.53 16 33 H 0.15 3.08 6.74 -2.91 -0.02 3.06 16 34 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.11 5.35 5.09 -2.91 -0.01 5.33 16 37 H 0.08 4.05 6.26 -2.39 -0.01 4.04 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -63.50 347.00 4.77 -58.73 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.37 Total: 25.68 kcal Atomic # 6 Polarization: -51.37 SS G_CDS: 5.17 Total: -46.20 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -1.68 Total: -73.91 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.12 Total: -9.91 kcal Total: -63.50 4.77 -58.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270907821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.387 kcal (2) G-P(sol) polarization free energy of solvation -63.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds