Wall clock time and date at job start Tue Mar 31 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35239 * 126.06966 * 2 1 4 4 C 1.40413 * 107.86582 * 180.13850 * 3 2 1 5 5 N 1.40115 * 125.97384 * 179.83102 * 4 3 2 6 6 C 1.34773 * 120.00098 * 359.72038 * 5 4 3 7 7 O 1.21623 * 119.99874 * 359.97438 * 6 5 4 8 8 C 1.47404 * 120.00190 * 179.72592 * 6 5 4 9 9 C 1.41296 * 126.41777 * 0.29495 * 8 6 5 10 10 N 1.30442 * 108.02973 * 179.97438 * 9 8 6 11 11 N 1.39936 * 108.89937 * 359.97438 * 10 9 8 12 12 C 1.46502 * 125.75727 * 180.02562 * 11 10 9 13 13 C 1.34275 * 108.49014 * 359.76914 * 11 10 9 14 14 N 1.31229 * 108.05406 * 359.56664 * 4 3 2 15 15 N 1.34969 * 126.06686 * 179.66199 * 2 1 3 16 16 C 1.46502 * 125.97556 * 359.97438 * 15 2 1 17 17 C 1.50696 * 109.46874 * 269.99891 * 16 15 2 18 18 H 1.07998 * 120.00611 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99952 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00477 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00091 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47239 * 89.99424 * 21 19 17 23 23 H 1.48496 * 109.47102 * 210.00106 * 21 19 17 24 24 H 1.48501 * 109.46568 * 329.99614 * 21 19 17 25 25 H 1.09000 * 109.46641 * 270.33941 * 1 2 3 26 26 H 1.08999 * 109.46744 * 30.33963 * 1 2 3 27 27 H 1.09001 * 109.47034 * 150.33878 * 1 2 3 28 28 H 1.07993 * 126.06448 * 359.97105 * 3 2 1 29 29 H 0.97000 * 119.99790 * 179.71523 * 5 4 3 30 30 H 1.08005 * 125.98480 * 359.94357 * 9 8 6 31 31 H 1.09005 * 109.46797 * 89.97767 * 12 11 10 32 32 H 1.08996 * 109.47479 * 209.97922 * 12 11 10 33 33 H 1.08998 * 109.46840 * 329.98044 * 12 11 10 34 34 H 1.07999 * 126.29179 * 180.23016 * 13 11 10 35 35 H 1.08997 * 109.47081 * 29.99832 * 16 15 2 36 36 H 1.08997 * 109.47062 * 150.00071 * 16 15 2 37 37 H 0.96999 * 120.00573 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 -0.0032 5 7 4.7732 1.4746 -0.0076 6 6 4.6365 2.8153 -0.0148 7 8 3.5270 3.3134 -0.0179 8 6 5.8317 3.6781 -0.0133 9 6 7.1773 3.2471 -0.0107 10 7 7.9401 4.3053 -0.0106 11 7 7.1312 5.4472 -0.0138 12 6 7.6065 6.8329 -0.0153 13 6 5.8460 5.0585 -0.0209 14 7 3.6337 -0.6578 0.0043 15 7 2.3017 -1.0910 0.0064 16 6 1.8500 -2.4846 0.0152 17 6 1.6957 -2.9536 1.4390 18 1 1.9119 -2.2809 2.2557 19 6 1.2773 -4.2414 1.6990 20 7 1.1431 -4.6510 2.9415 21 14 0.9025 -5.4050 0.2865 22 1 2.1348 -6.1453 -0.0853 23 1 -0.1470 -6.3688 0.7044 24 1 0.4216 -4.6255 -0.8824 25 1 -0.3632 0.0061 1.0277 26 1 -0.3633 0.8869 -0.5191 27 1 -0.3633 -0.8930 -0.5086 28 1 1.9720 2.1210 -0.0004 29 1 5.6581 1.0773 -0.0054 30 1 7.5152 2.2213 -0.0085 31 1 7.7264 7.1748 -1.0434 32 1 6.8816 7.4663 0.4960 33 1 8.5652 6.8888 0.5003 34 1 4.9822 5.7068 -0.0283 35 1 0.8911 -2.5590 -0.4978 36 1 2.5844 -3.1078 -0.4951 37 1 0.8484 -5.5569 3.1245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270982290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:59 Heat of formation + Delta-G solvation = 128.249644 kcal Electronic energy + Delta-G solvation = -21678.825669 eV Core-core repulsion = 18267.294916 eV Total energy + Delta-G solvation = -3411.530753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63507 -40.63899 -38.88311 -34.83013 -33.80672 -33.20421 -31.54656 -31.12706 -30.51338 -27.79518 -26.83917 -26.36348 -23.70293 -22.33191 -21.43985 -20.73694 -19.65900 -19.28089 -17.71518 -17.09828 -16.17049 -15.98532 -15.88528 -15.32482 -14.97492 -14.85285 -14.37952 -14.03841 -13.77437 -13.27377 -13.22653 -13.03293 -12.91468 -12.59630 -12.36986 -12.26381 -11.88542 -11.56122 -11.33520 -11.16787 -10.77529 -10.54613 -9.95363 -9.92762 -9.90961 -9.58789 -9.54151 -8.99022 -8.76457 -7.94974 -7.43004 -6.24359 -4.27293 1.26636 1.90005 2.00362 2.69235 2.85179 3.17243 3.22329 3.22994 3.25488 3.82335 3.86743 4.14539 4.23119 4.45865 4.64879 4.68917 4.88065 4.95310 5.04274 5.16249 5.31865 5.51324 5.66309 5.86626 6.06403 6.09564 6.25984 6.39316 6.46393 6.49172 6.58904 6.65950 6.77657 7.21921 7.31017 7.45021 7.66132 7.89017 8.33039 8.34974 8.61717 8.81503 9.30882 10.88196 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.034907 B = 0.003020 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.934627 B = 9268.607546 C = 9679.589375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.094 3.906 3 C -0.286 4.286 4 C 0.271 3.729 5 N -0.627 5.627 6 C 0.602 3.398 7 O -0.526 6.526 8 C -0.287 4.287 9 C 0.084 3.916 10 N -0.298 5.298 11 N -0.366 5.366 12 C 0.097 3.903 13 C 0.132 3.868 14 N -0.319 5.319 15 N -0.318 5.318 16 C 0.232 3.768 17 C -0.540 4.540 18 H 0.081 0.919 19 C 0.079 3.921 20 N -0.887 5.887 21 Si 0.874 3.126 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.264 1.264 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.162 0.838 29 H 0.409 0.591 30 H 0.193 0.807 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.191 0.809 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.804 20.223 -7.875 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C -0.317 4.317 4 C 0.018 3.982 5 N -0.273 5.273 6 C 0.390 3.610 7 O -0.402 6.402 8 C -0.302 4.302 9 C -0.104 4.104 10 N -0.118 5.118 11 N -0.145 5.145 12 C -0.044 4.044 13 C -0.020 4.020 14 N -0.149 5.149 15 N -0.100 5.100 16 C 0.113 3.887 17 C -0.578 4.578 18 H 0.099 0.901 19 C -0.126 4.126 20 N -0.524 5.524 21 Si 0.700 3.300 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.189 1.189 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.179 0.821 29 H 0.245 0.755 30 H 0.209 0.791 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.208 0.792 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.926 19.851 -7.747 23.508 hybrid contribution -0.891 -0.643 -0.469 1.195 sum 9.035 19.208 -8.216 22.762 Atomic orbital electron populations 1.20352 0.87825 1.02685 1.03442 1.21060 0.94891 0.87005 1.00739 1.21264 0.89675 0.99829 1.20924 1.18933 0.87256 0.89474 1.02505 1.42185 1.07417 1.04858 1.72868 1.17083 0.87775 0.80479 0.75708 1.90715 1.25998 1.74035 1.49452 1.20092 0.93521 0.93013 1.23622 1.24154 0.90583 0.98800 0.96871 1.77198 1.18465 0.91187 1.24920 1.48437 1.04082 1.07096 1.54878 1.22002 1.02478 0.75965 1.03944 1.22970 0.88364 0.95368 0.95275 1.77265 0.99348 1.08628 1.29670 1.48502 1.01276 1.06996 1.53193 1.19992 0.95286 0.73777 0.99683 1.21182 1.47224 0.99034 0.90363 0.90096 1.24810 0.94506 0.97478 0.95759 1.69872 1.45776 1.18340 1.18423 0.86889 0.78969 0.81506 0.82640 1.19640 1.20574 1.18877 0.90088 0.90661 0.91147 0.82080 0.75540 0.79057 0.90172 0.88916 0.88812 0.79198 0.93234 0.93665 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.11 36.01 0.36 -1.05 16 2 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.29 -5.85 9.52 -39.83 -0.38 -6.23 16 4 C 0.27 5.52 8.11 -154.42 -1.25 4.27 16 5 N -0.63 -9.90 5.44 -12.11 -0.07 -9.97 16 6 C 0.60 9.05 7.78 -12.53 -0.10 8.95 16 7 O -0.53 -9.30 14.02 5.26 0.07 -9.22 16 8 C -0.29 -3.35 6.13 -105.07 -0.64 -3.99 16 9 C 0.08 0.86 11.50 -16.98 -0.20 0.67 16 10 N -0.30 -3.22 12.50 30.86 0.39 -2.84 16 11 N -0.37 -3.16 3.98 -67.59 -0.27 -3.43 16 12 C 0.10 0.38 11.44 59.85 0.68 1.06 16 13 C 0.13 1.24 11.30 -16.55 -0.19 1.05 16 14 N -0.32 -7.29 12.59 31.43 0.40 -6.90 16 15 N -0.32 -7.42 3.59 -58.33 -0.21 -7.63 16 16 C 0.23 5.60 5.06 -5.19 -0.03 5.58 16 17 C -0.54 -15.18 9.94 -34.44 -0.34 -15.53 16 18 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 21 Si 0.87 20.21 27.47 -169.99 -4.67 15.54 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 25 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.14 7.07 -51.93 -0.37 0.77 16 28 H 0.16 3.19 5.91 -52.49 -0.31 2.88 16 29 H 0.41 5.19 7.78 -40.82 -0.32 4.88 16 30 H 0.19 1.42 7.50 -52.48 -0.39 1.03 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.19 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.05 1.11 6.09 -51.93 -0.32 0.80 16 36 H 0.05 1.09 7.57 -51.93 -0.39 0.69 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 324.64 15.07 4.89 4.89 Total: -1.00 -36.36 324.64 -5.66 -42.02 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -4.22 Total: 4.94 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.74 Total: -1.74 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 1.01 Total: -56.43 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.07 Total: -9.22 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.36 -5.66 -42.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270982290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.267 kcal (2) G-P(sol) polarization free energy of solvation -36.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds