Wall clock time and date at job start Tue Mar 31 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35239 * 126.06966 * 2 1 4 4 C 1.40413 * 107.86582 * 180.13850 * 3 2 1 5 5 N 1.40115 * 125.97384 * 179.83102 * 4 3 2 6 6 C 1.34773 * 120.00098 * 359.72038 * 5 4 3 7 7 O 1.21623 * 119.99874 * 359.97438 * 6 5 4 8 8 C 1.47404 * 120.00190 * 179.72592 * 6 5 4 9 9 C 1.41296 * 126.41777 * 0.29495 * 8 6 5 10 10 N 1.30442 * 108.02973 * 179.97438 * 9 8 6 11 11 N 1.39936 * 108.89937 * 359.97438 * 10 9 8 12 12 C 1.46502 * 125.75727 * 180.02562 * 11 10 9 13 13 C 1.34275 * 108.49014 * 359.76914 * 11 10 9 14 14 N 1.31229 * 108.05406 * 359.56664 * 4 3 2 15 15 N 1.34969 * 126.06686 * 179.66199 * 2 1 3 16 16 C 1.46502 * 125.97556 * 359.97438 * 15 2 1 17 17 C 1.50696 * 109.46874 * 269.99891 * 16 15 2 18 18 H 1.07998 * 120.00611 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99952 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00477 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00091 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47239 * 89.99424 * 21 19 17 23 23 H 1.48496 * 109.47102 * 210.00106 * 21 19 17 24 24 H 1.48501 * 109.46568 * 329.99614 * 21 19 17 25 25 H 1.09000 * 109.46641 * 270.33941 * 1 2 3 26 26 H 1.08999 * 109.46744 * 30.33963 * 1 2 3 27 27 H 1.09001 * 109.47034 * 150.33878 * 1 2 3 28 28 H 1.07993 * 126.06448 * 359.97105 * 3 2 1 29 29 H 0.97000 * 119.99790 * 179.71523 * 5 4 3 30 30 H 1.08005 * 125.98480 * 359.94357 * 9 8 6 31 31 H 1.09005 * 109.46797 * 89.97767 * 12 11 10 32 32 H 1.08996 * 109.47479 * 209.97922 * 12 11 10 33 33 H 1.08998 * 109.46840 * 329.98044 * 12 11 10 34 34 H 1.07999 * 126.29179 * 180.23016 * 13 11 10 35 35 H 1.08997 * 109.47081 * 29.99832 * 16 15 2 36 36 H 1.08997 * 109.47062 * 150.00071 * 16 15 2 37 37 H 0.96999 * 120.00573 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 -0.0032 5 7 4.7732 1.4746 -0.0076 6 6 4.6365 2.8153 -0.0148 7 8 3.5270 3.3134 -0.0179 8 6 5.8317 3.6781 -0.0133 9 6 7.1773 3.2471 -0.0107 10 7 7.9401 4.3053 -0.0106 11 7 7.1312 5.4472 -0.0138 12 6 7.6065 6.8329 -0.0153 13 6 5.8460 5.0585 -0.0209 14 7 3.6337 -0.6578 0.0043 15 7 2.3017 -1.0910 0.0064 16 6 1.8500 -2.4846 0.0152 17 6 1.6957 -2.9536 1.4390 18 1 1.9119 -2.2809 2.2557 19 6 1.2773 -4.2414 1.6990 20 7 1.1431 -4.6510 2.9415 21 14 0.9025 -5.4050 0.2865 22 1 2.1348 -6.1453 -0.0853 23 1 -0.1470 -6.3688 0.7044 24 1 0.4216 -4.6255 -0.8824 25 1 -0.3632 0.0061 1.0277 26 1 -0.3633 0.8869 -0.5191 27 1 -0.3633 -0.8930 -0.5086 28 1 1.9720 2.1210 -0.0004 29 1 5.6581 1.0773 -0.0054 30 1 7.5152 2.2213 -0.0085 31 1 7.7264 7.1748 -1.0434 32 1 6.8816 7.4663 0.4960 33 1 8.5652 6.8888 0.5003 34 1 4.9822 5.7068 -0.0283 35 1 0.8911 -2.5590 -0.4978 36 1 2.5844 -3.1078 -0.4951 37 1 0.8484 -5.5569 3.1245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270982290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:58 Heat of formation + Delta-G solvation = 102.049305 kcal Electronic energy + Delta-G solvation = -21679.961801 eV Core-core repulsion = 18267.294916 eV Total energy + Delta-G solvation = -3412.666884 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.51427 -42.11125 -40.15393 -36.30282 -35.24396 -34.37333 -33.15961 -32.77787 -31.41036 -29.15892 -27.95399 -27.82301 -25.03228 -23.93948 -22.34393 -21.80368 -21.09924 -20.59720 -19.21869 -18.73980 -17.66797 -17.02415 -16.81496 -16.76687 -16.38647 -15.96522 -15.62548 -15.33372 -15.10230 -14.82779 -14.49993 -13.93346 -13.83482 -13.73623 -13.63098 -13.50255 -13.42121 -13.20596 -12.84756 -12.55834 -12.23627 -12.12508 -11.81223 -11.52878 -11.39575 -10.89503 -10.86369 -10.60859 -9.83039 -9.55534 -9.04814 -8.38926 -6.49972 0.40858 0.95473 1.17489 1.26884 1.37273 1.38993 1.48311 1.58016 1.87750 2.28047 2.40313 2.56068 2.93658 3.43390 3.75477 3.83558 4.04088 4.13385 4.15479 4.41654 4.45267 4.53336 4.56004 4.64616 4.73258 4.82487 4.84735 4.87467 5.02587 5.14425 5.24157 5.26955 5.35446 5.85274 5.90064 6.02686 6.28651 6.39538 6.49102 6.54130 7.00816 7.13861 7.15412 8.77821 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.034907 B = 0.003020 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.934627 B = 9268.607546 C = 9679.589375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.089 3.911 3 C -0.297 4.297 4 C 0.277 3.723 5 N -0.622 5.622 6 C 0.605 3.395 7 O -0.556 6.556 8 C -0.315 4.315 9 C 0.086 3.914 10 N -0.322 5.322 11 N -0.360 5.360 12 C 0.085 3.915 13 C 0.146 3.854 14 N -0.356 5.356 15 N -0.344 5.344 16 C 0.241 3.759 17 C -0.550 4.550 18 H 0.023 0.977 19 C 0.021 3.979 20 N -0.938 5.938 21 Si 0.952 3.048 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.233 1.233 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.077 0.923 28 H 0.169 0.831 29 H 0.422 0.578 30 H 0.211 0.789 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.216 0.784 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.801 21.520 -9.891 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.328 4.328 4 C 0.023 3.977 5 N -0.270 5.270 6 C 0.395 3.605 7 O -0.433 6.433 8 C -0.330 4.330 9 C -0.102 4.102 10 N -0.142 5.142 11 N -0.138 5.138 12 C -0.054 4.054 13 C -0.008 4.008 14 N -0.187 5.187 15 N -0.126 5.126 16 C 0.121 3.879 17 C -0.588 4.588 18 H 0.041 0.959 19 C -0.179 4.179 20 N -0.577 5.577 21 Si 0.773 3.227 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.156 1.156 25 H 0.096 0.904 26 H 0.127 0.873 27 H 0.096 0.904 28 H 0.186 0.814 29 H 0.260 0.740 30 H 0.227 0.773 31 H 0.114 0.886 32 H 0.139 0.861 33 H 0.117 0.883 34 H 0.233 0.767 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.978 21.205 -9.770 25.390 hybrid contribution -0.784 -0.803 0.258 1.152 sum 9.194 20.402 -9.512 24.316 Atomic orbital electron populations 1.20510 0.85110 1.04748 1.03818 1.21772 0.96729 0.86367 0.99196 1.21473 0.89882 1.00084 1.21348 1.19289 0.88790 0.89216 1.00437 1.42309 1.06900 1.04965 1.72846 1.17563 0.88495 0.80068 0.74366 1.90678 1.27418 1.74333 1.50907 1.19898 0.92613 0.93614 1.26853 1.24467 0.89948 0.99791 0.95993 1.77170 1.19363 0.91951 1.25759 1.48833 1.03675 1.08135 1.53109 1.22439 1.03561 0.73831 1.05528 1.23359 0.89386 0.94884 0.93142 1.77177 0.99741 1.09964 1.31786 1.48439 1.01892 1.07102 1.55157 1.19784 0.96454 0.74661 0.96982 1.21257 1.47615 0.98725 0.91181 0.95862 1.25843 0.93754 0.99294 0.98998 1.70034 1.47024 1.19236 1.21392 0.85668 0.79019 0.78757 0.79297 1.19084 1.19952 1.15586 0.90410 0.87261 0.90405 0.81374 0.73993 0.77253 0.88589 0.86130 0.88340 0.76747 0.90742 0.93370 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.69 10.11 71.24 0.72 -1.97 16 2 C 0.09 3.70 6.92 41.39 0.29 3.99 16 3 C -0.30 -12.16 9.52 22.11 0.21 -11.95 16 4 C 0.28 11.39 8.11 133.34 1.08 12.47 16 5 N -0.62 -19.65 5.44 -310.48 -1.69 -21.34 16 6 C 0.60 17.90 7.78 86.66 0.67 18.58 16 7 O -0.56 -19.37 14.02 -4.10 -0.06 -19.43 16 8 C -0.31 -6.97 6.13 -20.16 -0.12 -7.09 16 9 C 0.09 1.66 11.50 85.65 0.99 2.65 16 10 N -0.32 -6.47 12.50 -56.27 -0.70 -7.17 16 11 N -0.36 -5.37 3.98 -367.75 -1.46 -6.83 16 12 C 0.09 0.41 11.44 127.77 1.46 1.88 16 13 C 0.15 2.43 11.30 84.28 0.95 3.38 16 14 N -0.36 -16.61 12.59 -54.47 -0.69 -17.29 16 15 N -0.34 -16.19 3.59 -338.45 -1.22 -17.41 16 16 C 0.24 11.58 5.06 85.63 0.43 12.01 16 17 C -0.55 -31.83 9.94 25.60 0.25 -31.57 16 18 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 19 C 0.02 1.17 5.47 84.65 0.46 1.63 16 20 N -0.94 -57.53 13.96 21.45 0.30 -57.23 16 21 Si 0.95 41.03 27.47 68.60 1.88 42.91 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.23 -8.83 6.54 99.48 0.65 -8.18 16 25 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.11 2.71 8.14 -2.39 -0.02 2.70 16 27 H 0.08 2.37 7.07 -2.39 -0.02 2.35 16 28 H 0.17 6.60 5.91 -2.91 -0.02 6.58 16 29 H 0.42 10.70 7.78 -92.71 -0.72 9.98 16 30 H 0.21 2.91 7.50 -2.91 -0.02 2.89 16 31 H 0.10 0.22 8.14 -2.38 -0.02 0.20 16 32 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.22 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.07 3.18 6.09 -2.39 -0.01 3.17 16 36 H 0.05 2.27 7.57 -2.39 -0.02 2.25 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -81.90 324.64 4.11 -77.79 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.34 Total: 22.00 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 7.40 Total: 3.99 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -5.46 Total: -127.27 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.06 Total: -19.43 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.88 Total: 42.91 kcal Total: -81.90 4.11 -77.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270982290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.841 kcal (2) G-P(sol) polarization free energy of solvation -81.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds