Wall clock time and date at job start Tue Mar 31 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40419 * 107.86750 * 179.88554 * 3 2 1 5 5 N 1.40115 * 125.97828 * 180.15434 * 4 3 2 6 6 C 1.34772 * 119.99865 * 0.29168 * 5 4 3 7 7 O 1.21620 * 119.99781 * 0.02562 * 6 5 4 8 8 C 1.47411 * 120.00159 * 179.97438 * 6 5 4 9 9 C 1.41302 * 126.41479 * 359.69689 * 8 6 5 10 10 N 1.30447 * 108.02265 * 179.81377 * 9 8 6 11 11 N 1.39935 * 108.89857 * 0.44381 * 10 9 8 12 12 H 0.96998 * 125.75129 * 179.73645 * 11 10 9 13 13 C 1.34267 * 108.49416 * 359.71185 * 11 10 9 14 14 C 1.50700 * 126.29028 * 180.02562 * 13 11 10 15 15 N 1.31225 * 108.04903 * 0.38027 * 4 3 2 16 16 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 17 17 C 1.46494 * 125.97360 * 359.94234 * 16 2 1 18 18 C 1.50702 * 109.47377 * 90.00230 * 17 16 2 19 19 H 1.07999 * 119.99790 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00105 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00037 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99826 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46951 * 89.99908 * 22 20 18 24 24 H 1.48496 * 109.46975 * 209.99951 * 22 20 18 25 25 H 1.48501 * 109.47248 * 329.99861 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 29 29 H 1.08001 * 126.06730 * 0.02562 * 3 2 1 30 30 H 0.96993 * 119.99966 * 180.29571 * 5 4 3 31 31 H 1.08000 * 125.98267 * 359.95434 * 9 8 6 32 32 H 1.09006 * 109.47204 * 269.95571 * 14 13 11 33 33 H 1.08999 * 109.47535 * 29.95737 * 14 13 11 34 34 H 1.09003 * 109.47115 * 149.96109 * 14 13 11 35 35 H 1.08999 * 109.46728 * 209.99683 * 17 16 2 36 36 H 1.08994 * 109.47426 * 329.99585 * 17 16 2 37 37 H 0.96997 * 120.00178 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0027 5 7 4.7732 1.4746 0.0066 6 6 4.6365 2.8153 0.0141 7 8 3.5270 3.3134 0.0179 8 6 5.8317 3.6781 0.0188 9 6 7.1774 3.2471 0.0223 10 7 7.9401 4.3053 0.0219 11 7 7.1312 5.4471 0.0284 12 1 7.4459 6.3646 0.0332 13 6 5.8460 5.0585 0.0264 14 6 4.6406 5.9631 0.0311 15 7 3.6337 -0.6577 -0.0041 16 7 2.3016 -1.0910 -0.0059 17 6 1.8499 -2.4846 -0.0123 18 6 1.6939 -2.9556 -1.4353 19 1 1.9093 -2.2839 -2.2531 20 6 1.2762 -4.2441 -1.6930 21 7 1.0145 -5.0621 -0.6972 22 14 1.0822 -4.8277 -3.4569 23 1 2.3628 -5.4133 -3.9282 24 1 0.0133 -5.8564 -3.5231 25 1 0.7161 -3.6772 -4.3216 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 1.9719 2.1210 0.0004 30 1 5.6581 1.0773 0.0039 31 1 7.5151 2.2212 0.0227 32 1 4.3496 6.1752 1.0600 33 1 4.8844 6.8960 -0.4772 34 1 3.8160 5.4723 -0.4858 35 1 2.5850 -3.1070 0.4979 36 1 0.8918 -2.5583 0.5020 37 1 0.7210 -5.9687 -0.8785 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271150205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:05 Heat of formation + Delta-G solvation = 109.360850 kcal Electronic energy + Delta-G solvation = -21909.696919 eV Core-core repulsion = 18497.347087 eV Total energy + Delta-G solvation = -3412.349832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.71545 -40.55808 -38.82535 -34.83387 -33.42272 -32.86238 -31.77121 -31.18679 -30.66254 -27.76716 -26.56177 -26.28190 -23.71666 -22.50497 -22.16262 -20.47171 -19.68974 -18.96768 -17.79496 -16.67353 -16.13174 -15.85754 -15.65646 -15.27267 -14.70427 -14.68312 -14.34435 -13.93841 -13.82347 -13.40562 -13.08128 -12.97381 -12.49154 -12.45962 -12.29325 -12.11219 -11.63310 -11.38595 -11.17947 -11.04490 -10.82019 -10.40449 -10.21944 -10.02030 -9.87573 -9.51976 -9.49178 -8.98418 -8.62856 -7.88511 -7.39531 -6.23816 -4.31480 1.24527 1.89478 2.33756 2.76104 2.93914 3.23127 3.24017 3.29400 3.34490 3.89828 3.94564 4.29277 4.31965 4.44484 4.69919 4.89833 5.09772 5.17126 5.25241 5.45585 5.58670 5.76010 5.82249 5.98427 6.08144 6.12937 6.31198 6.51169 6.61814 6.77376 6.80313 6.96579 7.08148 7.19444 7.51333 7.68891 7.73662 7.91111 8.09196 8.37342 8.69409 8.78042 9.34929 10.83349 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.027704 B = 0.003262 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.427724 B = 8581.717655 C = 9032.704018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.090 3.910 3 C -0.289 4.289 4 C 0.267 3.733 5 N -0.627 5.627 6 C 0.602 3.398 7 O -0.524 6.524 8 C -0.291 4.291 9 C 0.089 3.911 10 N -0.296 5.296 11 N -0.465 5.465 12 H 0.442 0.558 13 C 0.167 3.833 14 C -0.103 4.103 15 N -0.321 5.321 16 N -0.317 5.317 17 C 0.259 3.741 18 C -0.536 4.536 19 H 0.065 0.935 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.272 1.272 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.408 0.592 31 H 0.193 0.807 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.224 19.896 2.588 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.014 3.986 5 N -0.273 5.273 6 C 0.389 3.611 7 O -0.400 6.400 8 C -0.306 4.306 9 C -0.100 4.100 10 N -0.116 5.116 11 N -0.172 5.172 12 H 0.287 0.713 13 C 0.033 3.967 14 C -0.161 4.161 15 N -0.152 5.152 16 N -0.100 5.100 17 C 0.141 3.859 18 C -0.574 4.574 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.196 1.196 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.177 0.823 30 H 0.244 0.756 31 H 0.209 0.791 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.278 19.286 2.633 21.152 hybrid contribution -0.498 0.043 -0.931 1.057 sum 7.779 19.330 1.702 20.906 Atomic orbital electron populations 1.20373 0.87986 1.03827 1.02481 1.21065 0.94886 0.87187 1.00980 1.21250 0.89690 0.99786 1.21247 1.18939 0.87160 0.89534 1.02959 1.42169 1.07443 1.04825 1.72861 1.17027 0.87748 0.80499 0.75794 1.90675 1.25929 1.73837 1.49595 1.19861 0.93682 0.92399 1.24673 1.24137 0.90507 0.98910 0.96427 1.77173 1.17804 0.91434 1.25154 1.46197 1.03577 1.09317 1.58086 0.71309 1.21562 0.87162 0.94330 0.93685 1.20753 0.93717 0.97159 1.04504 1.77257 0.99919 1.08520 1.29509 1.48979 1.00977 1.07752 1.52272 1.19675 0.95960 0.71399 0.98881 1.21337 1.46719 0.97962 0.91415 0.91724 1.24927 0.94695 0.96060 0.98106 1.69917 1.45011 1.06937 1.31130 0.86360 0.78002 0.78558 0.83797 1.20348 1.20907 1.19640 0.91128 0.89955 0.90647 0.82253 0.75648 0.79054 0.89219 0.90975 0.87091 0.93021 0.92818 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.50 9.89 36.01 0.36 -1.15 16 2 C 0.09 1.90 6.92 -82.28 -0.57 1.33 16 3 C -0.29 -5.89 9.52 -39.83 -0.38 -6.27 16 4 C 0.27 5.43 8.11 -154.42 -1.25 4.18 16 5 N -0.63 -9.88 5.44 -12.11 -0.07 -9.95 16 6 C 0.60 8.93 7.78 -12.53 -0.10 8.83 16 7 O -0.52 -8.84 11.96 5.26 0.06 -8.78 16 8 C -0.29 -3.41 6.13 -105.07 -0.64 -4.06 16 9 C 0.09 0.91 11.50 -16.98 -0.20 0.71 16 10 N -0.30 -3.11 12.63 30.86 0.39 -2.72 16 11 N -0.47 -3.80 7.29 33.86 0.25 -3.56 16 12 H 0.44 2.02 8.96 -182.72 -1.64 0.38 16 13 C 0.17 1.58 7.29 -81.60 -0.60 0.99 16 14 C -0.10 -0.75 9.89 36.01 0.36 -0.40 16 15 N -0.32 -7.43 12.59 31.43 0.40 -7.03 16 16 N -0.32 -7.54 3.59 -58.33 -0.21 -7.74 16 17 C 0.26 6.63 5.81 -5.20 -0.03 6.60 16 18 C -0.54 -14.76 9.39 -34.44 -0.32 -15.08 16 19 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 22 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.16 3.11 5.91 -52.49 -0.31 2.80 16 30 H 0.41 5.21 7.78 -40.82 -0.32 4.90 16 31 H 0.19 1.41 7.50 -52.49 -0.39 1.02 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.11 1.06 6.50 -51.93 -0.34 0.72 16 35 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.05 1.36 7.65 -51.93 -0.40 0.96 16 37 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 324.19 15.07 4.89 4.89 Total: -1.00 -33.84 324.19 -7.50 -41.35 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.45 Total: 4.43 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -3.47 Total: -2.63 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 1.49 Total: -55.33 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.78 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.84 -7.50 -41.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271150205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.706 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds