Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40419 * 107.86750 * 179.88554 * 3 2 1 5 5 N 1.40115 * 125.97828 * 180.15434 * 4 3 2 6 6 C 1.34772 * 119.99865 * 0.29168 * 5 4 3 7 7 O 1.21620 * 119.99781 * 0.02562 * 6 5 4 8 8 C 1.47411 * 120.00159 * 179.97438 * 6 5 4 9 9 C 1.41302 * 126.41479 * 359.69689 * 8 6 5 10 10 N 1.30447 * 108.02265 * 179.81377 * 9 8 6 11 11 N 1.39935 * 108.89857 * 0.44381 * 10 9 8 12 12 H 0.96998 * 125.75129 * 179.73645 * 11 10 9 13 13 C 1.34267 * 108.49416 * 359.71185 * 11 10 9 14 14 C 1.50700 * 126.29028 * 180.02562 * 13 11 10 15 15 N 1.31225 * 108.04903 * 0.38027 * 4 3 2 16 16 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 17 17 C 1.46494 * 125.97360 * 359.94234 * 16 2 1 18 18 C 1.50702 * 109.47377 * 90.00230 * 17 16 2 19 19 H 1.07999 * 119.99790 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00105 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00037 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99826 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46951 * 89.99908 * 22 20 18 24 24 H 1.48496 * 109.46975 * 209.99951 * 22 20 18 25 25 H 1.48501 * 109.47248 * 329.99861 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 29 29 H 1.08001 * 126.06730 * 0.02562 * 3 2 1 30 30 H 0.96993 * 119.99966 * 180.29571 * 5 4 3 31 31 H 1.08000 * 125.98267 * 359.95434 * 9 8 6 32 32 H 1.09006 * 109.47204 * 269.95571 * 14 13 11 33 33 H 1.08999 * 109.47535 * 29.95737 * 14 13 11 34 34 H 1.09003 * 109.47115 * 149.96109 * 14 13 11 35 35 H 1.08999 * 109.46728 * 209.99683 * 17 16 2 36 36 H 1.08994 * 109.47426 * 329.99585 * 17 16 2 37 37 H 0.96997 * 120.00178 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0027 5 7 4.7732 1.4746 0.0066 6 6 4.6365 2.8153 0.0141 7 8 3.5270 3.3134 0.0179 8 6 5.8317 3.6781 0.0188 9 6 7.1774 3.2471 0.0223 10 7 7.9401 4.3053 0.0219 11 7 7.1312 5.4471 0.0284 12 1 7.4459 6.3646 0.0332 13 6 5.8460 5.0585 0.0264 14 6 4.6406 5.9631 0.0311 15 7 3.6337 -0.6577 -0.0041 16 7 2.3016 -1.0910 -0.0059 17 6 1.8499 -2.4846 -0.0123 18 6 1.6939 -2.9556 -1.4353 19 1 1.9093 -2.2839 -2.2531 20 6 1.2762 -4.2441 -1.6930 21 7 1.0145 -5.0621 -0.6972 22 14 1.0822 -4.8277 -3.4569 23 1 2.3628 -5.4133 -3.9282 24 1 0.0133 -5.8564 -3.5231 25 1 0.7161 -3.6772 -4.3216 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 1.9719 2.1210 0.0004 30 1 5.6581 1.0773 0.0039 31 1 7.5151 2.2212 0.0227 32 1 4.3496 6.1752 1.0600 33 1 4.8844 6.8960 -0.4772 34 1 3.8160 5.4723 -0.4858 35 1 2.5850 -3.1070 0.4979 36 1 0.8918 -2.5583 0.5020 37 1 0.7210 -5.9687 -0.8785 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271150205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = 86.038805 kcal Electronic energy + Delta-G solvation = -21910.708239 eV Core-core repulsion = 18497.347087 eV Total energy + Delta-G solvation = -3413.361152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.58283 -42.09329 -40.09331 -36.29572 -35.29457 -33.69980 -33.09124 -32.64736 -32.03259 -28.86735 -28.11207 -27.80873 -25.27477 -23.98775 -22.97239 -21.73844 -21.15318 -20.27325 -18.81952 -18.69829 -17.59340 -17.12063 -16.83168 -16.65922 -16.20947 -15.93240 -15.42929 -15.23483 -15.15639 -14.62000 -14.29505 -14.12762 -13.76291 -13.66220 -13.58152 -13.52255 -13.15324 -13.12048 -12.78462 -12.67282 -12.22561 -12.06312 -11.94955 -11.48334 -11.29625 -10.82212 -10.74225 -10.71505 -9.85771 -9.51668 -9.05691 -8.30734 -6.48609 0.38546 0.96033 1.21187 1.36672 1.39382 1.40820 1.52343 1.78855 1.89997 2.33191 2.49117 2.57019 2.98671 3.52479 3.65660 3.87791 3.98320 4.12503 4.20485 4.43291 4.53684 4.71495 4.80595 4.83117 4.89960 4.94368 5.04256 5.05055 5.14824 5.22723 5.32812 5.34700 5.55858 5.83422 6.00369 6.18846 6.30484 6.32534 6.48835 6.64928 7.07370 7.19219 7.22453 8.74947 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.027704 B = 0.003262 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.427724 B = 8581.717655 C = 9032.704018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.086 3.914 3 C -0.296 4.296 4 C 0.276 3.724 5 N -0.622 5.622 6 C 0.603 3.397 7 O -0.547 6.547 8 C -0.320 4.320 9 C 0.091 3.909 10 N -0.314 5.314 11 N -0.449 5.449 12 H 0.459 0.541 13 C 0.181 3.819 14 C -0.102 4.102 15 N -0.360 5.360 16 N -0.344 5.344 17 C 0.276 3.724 18 C -0.553 4.553 19 H 0.049 0.951 20 C 0.023 3.977 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.269 1.269 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.171 0.829 30 H 0.421 0.579 31 H 0.213 0.787 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.024 0.976 36 H 0.052 0.948 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.517 21.805 1.918 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.327 4.327 4 C 0.022 3.978 5 N -0.270 5.270 6 C 0.393 3.607 7 O -0.424 6.424 8 C -0.334 4.334 9 C -0.097 4.097 10 N -0.134 5.134 11 N -0.157 5.157 12 H 0.307 0.693 13 C 0.045 3.955 14 C -0.160 4.160 15 N -0.191 5.191 16 N -0.126 5.126 17 C 0.157 3.843 18 C -0.591 4.591 19 H 0.068 0.932 20 C -0.178 4.178 21 N -0.557 5.557 22 Si 0.795 3.205 23 H -0.201 1.201 24 H -0.195 1.195 25 H -0.194 1.194 26 H 0.111 0.889 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.188 0.812 30 H 0.259 0.741 31 H 0.229 0.771 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.614 21.243 1.973 23.008 hybrid contribution -0.526 -0.372 -0.672 0.931 sum 8.088 20.871 1.301 22.421 Atomic orbital electron populations 1.20498 0.85389 1.04361 1.04076 1.21768 0.96665 0.86476 0.99539 1.21459 0.89751 1.00009 1.21455 1.19278 0.88753 0.89159 1.00618 1.42292 1.06855 1.04933 1.72969 1.17478 0.88520 0.80044 0.74624 1.90646 1.27125 1.74031 1.50611 1.19700 0.92971 0.93025 1.27753 1.24477 0.89791 0.99964 0.95473 1.77151 1.18463 0.92012 1.25800 1.46198 1.02902 1.09845 1.56751 0.69269 1.21854 0.88159 0.93925 0.91565 1.20818 0.91954 0.97874 1.05320 1.77177 1.00059 1.10034 1.31813 1.48771 1.01768 1.07488 1.54602 1.19223 0.94864 0.72517 0.97716 1.21451 1.47449 0.98365 0.91818 0.93226 1.25728 0.93970 0.95903 1.02222 1.69999 1.45184 1.07381 1.33106 0.85361 0.78235 0.78200 0.78727 1.20052 1.19533 1.19368 0.88912 0.91565 0.87841 0.81195 0.74129 0.77075 0.88127 0.87588 0.89244 0.95831 0.93041 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.83 9.89 71.24 0.70 -2.12 16 2 C 0.09 3.62 6.92 41.38 0.29 3.91 16 3 C -0.30 -12.04 9.52 22.11 0.21 -11.83 16 4 C 0.28 11.33 8.11 133.34 1.08 12.41 16 5 N -0.62 -19.45 5.44 -310.47 -1.69 -21.14 16 6 C 0.60 17.46 7.78 86.66 0.67 18.13 16 7 O -0.55 -18.07 11.96 -4.09 -0.05 -18.12 16 8 C -0.32 -7.03 6.13 -20.15 -0.12 -7.16 16 9 C 0.09 1.72 11.50 85.65 0.99 2.71 16 10 N -0.31 -5.97 12.63 -56.27 -0.71 -6.69 16 11 N -0.45 -6.16 7.29 -46.79 -0.34 -6.50 16 12 H 0.46 2.78 8.96 -213.43 -1.91 0.86 16 13 C 0.18 3.03 7.29 42.14 0.31 3.34 16 14 C -0.10 -1.23 9.89 71.24 0.70 -0.52 16 15 N -0.36 -17.10 12.59 -54.47 -0.69 -17.78 16 16 N -0.34 -16.78 3.59 -338.46 -1.22 -18.00 16 17 C 0.28 14.70 5.81 85.63 0.50 15.19 16 18 C -0.55 -31.17 9.39 25.60 0.24 -30.93 16 19 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 20 C 0.02 1.25 5.46 84.66 0.46 1.71 16 21 N -0.92 -52.10 13.29 21.45 0.28 -51.81 16 22 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.07 2.42 7.71 -2.39 -0.02 2.40 16 28 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 29 H 0.17 6.52 5.91 -2.91 -0.02 6.50 16 30 H 0.42 10.62 7.78 -92.71 -0.72 9.90 16 31 H 0.21 2.79 7.50 -2.91 -0.02 2.77 16 32 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.09 1.57 6.50 -2.39 -0.02 1.56 16 35 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 2.71 7.65 -2.39 -0.02 2.69 16 37 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -73.70 324.19 2.15 -71.54 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -1.49 Total: 18.42 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.03 Total: 4.83 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -4.36 Total: -121.92 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.05 Total: -18.12 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -73.70 2.15 -71.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271150205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.580 kcal (2) G-P(sol) polarization free energy of solvation -73.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds