Wall clock time and date at job start Tue Mar 31 2020 05:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 H 1.08997 * 109.47298 * 305.00526 * 4 3 2 6 6 N 1.46910 * 109.46906 * 65.00197 * 4 3 2 7 7 C 1.46900 * 110.99778 * 274.99902 * 6 4 3 8 8 C 1.52995 * 109.47125 * 179.97438 * 7 6 4 9 9 C 1.53004 * 109.47457 * 179.97438 * 8 7 6 10 10 S 1.80992 * 109.47236 * 180.02562 * 9 8 7 11 11 C 1.76197 * 100.00160 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99558 * 359.97438 * 11 10 9 13 13 C 1.38794 * 120.00530 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00405 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99918 * 359.97438 * 13 11 10 16 16 H 1.48510 * 109.46783 * 89.99854 * 15 13 11 17 17 H 1.48495 * 109.47692 * 209.99995 * 15 13 11 18 18 H 1.48501 * 109.47234 * 330.00424 * 15 13 11 19 19 C 1.50699 * 109.47132 * 184.99713 * 4 3 2 20 20 C 1.38229 * 120.00268 * 279.73202 * 19 4 3 21 21 C 1.38234 * 120.00148 * 179.79230 * 20 19 4 22 22 C 1.38232 * 119.99604 * 0.43465 * 21 20 19 23 23 C 1.38233 * 120.00500 * 359.81424 * 22 21 20 24 24 C 1.38231 * 119.99496 * 100.00308 * 19 4 3 25 25 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 28 28 H 1.00891 * 111.00039 * 151.04594 * 6 4 3 29 29 H 1.09001 * 109.47368 * 300.00123 * 7 6 4 30 30 H 1.09009 * 109.47237 * 60.00290 * 7 6 4 31 31 H 1.09001 * 109.47346 * 300.00440 * 8 7 6 32 32 H 1.09002 * 109.46829 * 60.00516 * 8 7 6 33 33 H 1.09000 * 109.46786 * 300.00439 * 9 8 7 34 34 H 1.08997 * 109.46933 * 59.99850 * 9 8 7 35 35 H 0.97001 * 120.00227 * 180.02562 * 14 13 11 36 36 H 1.08005 * 119.99764 * 359.97438 * 20 19 4 37 37 H 1.08002 * 120.00172 * 180.27420 * 21 20 19 38 38 H 1.08005 * 119.99795 * 179.83856 * 22 21 20 39 39 H 1.07999 * 120.00631 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.00444 * 359.97438 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 1 2.7210 0.6389 -2.0562 6 7 2.7663 2.3153 -0.7908 7 6 1.4060 2.5987 -1.2677 8 6 1.0368 4.0438 -0.9268 9 6 -0.3797 4.3392 -1.4241 10 16 -0.8161 6.0490 -1.0215 11 6 -2.4462 6.1136 -1.6873 12 1 -2.8691 5.2423 -2.1653 13 6 -3.1867 7.2841 -1.5976 14 7 -4.4042 7.3325 -2.0954 15 14 -2.4554 8.7908 -0.7702 16 1 -1.7421 9.6130 -1.7805 17 1 -3.5423 9.5947 -0.1558 18 1 -1.5003 8.3626 0.2832 19 6 4.6575 0.8405 -1.1822 20 6 5.4427 1.5377 -0.2833 21 6 6.8203 1.4494 -0.3553 22 6 7.4128 0.6709 -1.3319 23 6 6.6277 -0.0223 -2.2341 24 6 5.2500 0.0627 -2.1594 25 1 -1.0502 -0.0001 0.0004 26 1 3.0092 0.3479 0.9672 27 1 3.0098 -1.0104 -0.1831 28 1 3.4284 2.9723 -1.1753 29 1 1.3627 2.4573 -2.3476 30 1 0.7028 1.9207 -0.7839 31 1 1.0800 4.1848 0.1531 32 1 1.7400 4.7221 -1.4103 33 1 -0.4224 4.1983 -2.5041 34 1 -1.0831 3.6609 -0.9411 35 1 -4.9216 8.1506 -2.0330 36 1 4.9798 2.1492 0.4772 37 1 7.4338 1.9906 0.3499 38 1 8.4892 0.6039 -1.3897 39 1 7.0906 -0.6302 -2.9973 40 1 4.6365 -0.4789 -2.8643 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271648321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:55 Heat of formation + Delta-G solvation = 63.216785 kcal Electronic energy + Delta-G solvation = -19199.665974 eV Core-core repulsion = 16299.315648 eV Total energy + Delta-G solvation = -2900.350326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.89650 -37.41516 -34.23479 -32.96687 -32.42079 -31.20960 -30.68237 -28.91299 -25.81630 -25.17017 -23.56450 -22.71600 -21.16573 -20.72084 -18.10477 -17.44341 -17.23114 -16.27304 -15.78454 -15.24522 -14.97005 -14.65458 -14.52647 -14.31026 -13.95081 -13.63821 -13.31201 -13.08440 -12.84551 -12.76588 -12.63680 -12.11194 -12.00117 -11.55785 -11.28891 -11.21079 -11.06211 -11.03711 -10.56771 -10.23446 -10.15640 -9.88517 -9.70163 -9.17900 -9.01464 -8.98828 -8.53553 -8.49169 -6.91708 -6.26731 -3.98562 1.03723 1.14349 2.79980 2.86368 3.02896 3.31392 3.47315 3.50664 3.59391 4.04282 4.22494 4.33504 4.61176 4.65683 4.75023 4.83543 4.89592 5.04593 5.11927 5.12237 5.23396 5.31238 5.33784 5.45379 5.52447 5.69145 5.70378 5.74752 5.81078 5.87090 6.00981 6.11922 6.18368 6.24072 6.26061 6.33094 6.53655 6.66653 6.72630 6.97555 7.30254 7.62236 7.97118 8.45898 9.19339 10.82799 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.023948 B = 0.002862 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.898842 B = 9779.906232 C =10500.073309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.003 3.997 4 C 0.133 3.867 5 H 0.056 0.944 6 N -0.679 5.679 7 C 0.047 3.953 8 C -0.097 4.097 9 C -0.080 4.080 10 S -0.216 6.216 11 C -0.501 4.501 12 H 0.087 0.913 13 C 0.091 3.909 14 N -0.883 5.883 15 Si 0.862 3.138 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.237 1.237 19 C -0.091 4.091 20 C -0.098 4.098 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.112 4.112 25 H 0.216 0.784 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.343 0.657 29 H 0.027 0.973 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.270 0.730 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.820 -16.457 2.506 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.179 4.179 3 C -0.034 4.034 4 C 0.023 3.977 5 H 0.074 0.926 6 N -0.311 5.311 7 C -0.083 4.083 8 C -0.136 4.136 9 C -0.229 4.229 10 S 0.012 5.988 11 C -0.649 4.649 12 H 0.105 0.895 13 C -0.117 4.117 14 N -0.520 5.520 15 Si 0.687 3.313 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.161 1.161 19 C -0.092 4.092 20 C -0.116 4.116 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.141 4.141 24 C -0.130 4.130 25 H 0.233 0.767 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.161 0.839 29 H 0.045 0.955 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 22.034 -15.681 3.636 27.287 hybrid contribution -0.758 -0.077 -1.431 1.621 sum 21.275 -15.758 2.206 26.567 Atomic orbital electron populations 1.24933 0.96048 1.00992 1.00398 1.22836 0.94312 0.99849 1.00862 1.18762 0.85011 0.99277 1.00327 1.20345 0.90014 0.90297 0.97024 0.92647 1.60577 1.04245 1.02229 1.64017 1.22445 0.90178 0.98225 0.97472 1.21277 0.95439 0.94573 1.02290 1.22985 0.97969 0.99305 1.02614 1.84147 1.22075 1.13526 1.79054 1.22129 0.96936 1.02835 1.42965 0.89467 1.24799 0.94170 0.98405 0.94338 1.69939 1.09511 1.28389 1.44142 0.86666 0.80081 0.83035 0.81542 1.19412 1.20130 1.16120 1.19889 0.94625 0.98347 0.96326 1.21151 0.93305 0.98516 0.98628 1.21215 0.94989 0.99133 0.98666 1.21189 0.99818 0.97339 0.95537 1.21113 0.93692 0.99936 0.99322 1.21069 0.94980 0.98910 0.98088 0.76686 0.88723 0.89594 0.83854 0.95505 0.89105 0.90722 0.91947 0.91737 0.91419 0.92006 0.84831 0.85980 0.86245 0.86132 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.45 17.64 29.55 0.52 -1.93 16 2 C -0.18 -2.12 11.25 -37.12 -0.42 -2.54 16 3 C 0.00 0.03 5.37 -29.51 -0.16 -0.13 16 4 C 0.13 1.32 2.45 -68.86 -0.17 1.15 16 5 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 6 N -0.68 -7.72 5.65 -107.94 -0.61 -8.33 16 7 C 0.05 0.63 5.25 -3.83 -0.02 0.61 16 8 C -0.10 -1.55 5.48 -26.73 -0.15 -1.70 16 9 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 10 S -0.22 -5.36 19.41 -107.50 -2.09 -7.45 16 11 C -0.50 -14.75 10.04 30.94 0.31 -14.44 16 12 H 0.09 2.73 8.03 -52.48 -0.42 2.31 16 13 C 0.09 2.69 5.50 -17.43 -0.10 2.60 16 14 N -0.88 -27.06 13.97 55.49 0.78 -26.29 16 15 Si 0.86 21.82 27.74 -169.99 -4.71 17.10 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 19 C -0.09 -0.82 4.72 -104.63 -0.49 -1.31 16 20 C -0.10 -0.85 9.00 -39.59 -0.36 -1.21 16 21 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 22 C -0.12 -0.90 10.05 -39.59 -0.40 -1.29 16 23 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 24 C -0.11 -0.93 9.67 -39.58 -0.38 -1.31 16 25 H 0.22 2.07 7.80 -54.08 -0.42 1.65 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.34 3.72 7.98 -39.30 -0.31 3.41 16 29 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 30 H 0.09 1.28 4.13 -51.92 -0.21 1.07 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 34 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 35 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.13 1.15 7.71 -52.48 -0.40 0.75 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.12 0.85 8.04 -52.48 -0.42 0.43 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -31.86 350.64 -9.72 -41.57 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.97 Total: 3.66 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -2.39 Total: -25.56 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.16 Total: -34.61 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -2.09 Total: -7.45 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.86 -9.72 -41.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271648321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.790 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds