Wall clock time and date at job start Tue Mar 31 2020 05:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 H 1.08997 * 109.47298 * 305.00526 * 4 3 2 6 6 N 1.46910 * 109.46906 * 65.00197 * 4 3 2 7 7 C 1.46900 * 110.99778 * 274.99902 * 6 4 3 8 8 C 1.52995 * 109.47125 * 179.97438 * 7 6 4 9 9 C 1.53004 * 109.47457 * 179.97438 * 8 7 6 10 10 S 1.80992 * 109.47236 * 180.02562 * 9 8 7 11 11 C 1.76197 * 100.00160 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99558 * 359.97438 * 11 10 9 13 13 C 1.38794 * 120.00530 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00405 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99918 * 359.97438 * 13 11 10 16 16 H 1.48510 * 109.46783 * 89.99854 * 15 13 11 17 17 H 1.48495 * 109.47692 * 209.99995 * 15 13 11 18 18 H 1.48501 * 109.47234 * 330.00424 * 15 13 11 19 19 C 1.50699 * 109.47132 * 184.99713 * 4 3 2 20 20 C 1.38229 * 120.00268 * 279.73202 * 19 4 3 21 21 C 1.38234 * 120.00148 * 179.79230 * 20 19 4 22 22 C 1.38232 * 119.99604 * 0.43465 * 21 20 19 23 23 C 1.38233 * 120.00500 * 359.81424 * 22 21 20 24 24 C 1.38231 * 119.99496 * 100.00308 * 19 4 3 25 25 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 28 28 H 1.00891 * 111.00039 * 151.04594 * 6 4 3 29 29 H 1.09001 * 109.47368 * 300.00123 * 7 6 4 30 30 H 1.09009 * 109.47237 * 60.00290 * 7 6 4 31 31 H 1.09001 * 109.47346 * 300.00440 * 8 7 6 32 32 H 1.09002 * 109.46829 * 60.00516 * 8 7 6 33 33 H 1.09000 * 109.46786 * 300.00439 * 9 8 7 34 34 H 1.08997 * 109.46933 * 59.99850 * 9 8 7 35 35 H 0.97001 * 120.00227 * 180.02562 * 14 13 11 36 36 H 1.08005 * 119.99764 * 359.97438 * 20 19 4 37 37 H 1.08002 * 120.00172 * 180.27420 * 21 20 19 38 38 H 1.08005 * 119.99795 * 179.83856 * 22 21 20 39 39 H 1.07999 * 120.00631 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.00444 * 359.97438 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 1 2.7210 0.6389 -2.0562 6 7 2.7663 2.3153 -0.7908 7 6 1.4060 2.5987 -1.2677 8 6 1.0368 4.0438 -0.9268 9 6 -0.3797 4.3392 -1.4241 10 16 -0.8161 6.0490 -1.0215 11 6 -2.4462 6.1136 -1.6873 12 1 -2.8691 5.2423 -2.1653 13 6 -3.1867 7.2841 -1.5976 14 7 -4.4042 7.3325 -2.0954 15 14 -2.4554 8.7908 -0.7702 16 1 -1.7421 9.6130 -1.7805 17 1 -3.5423 9.5947 -0.1558 18 1 -1.5003 8.3626 0.2832 19 6 4.6575 0.8405 -1.1822 20 6 5.4427 1.5377 -0.2833 21 6 6.8203 1.4494 -0.3553 22 6 7.4128 0.6709 -1.3319 23 6 6.6277 -0.0223 -2.2341 24 6 5.2500 0.0627 -2.1594 25 1 -1.0502 -0.0001 0.0004 26 1 3.0092 0.3479 0.9672 27 1 3.0098 -1.0104 -0.1831 28 1 3.4284 2.9723 -1.1753 29 1 1.3627 2.4573 -2.3476 30 1 0.7028 1.9207 -0.7839 31 1 1.0800 4.1848 0.1531 32 1 1.7400 4.7221 -1.4103 33 1 -0.4224 4.1983 -2.5041 34 1 -1.0831 3.6609 -0.9411 35 1 -4.9216 8.1506 -2.0330 36 1 4.9798 2.1492 0.4772 37 1 7.4338 1.9906 0.3499 38 1 8.4892 0.6039 -1.3897 39 1 7.0906 -0.6302 -2.9973 40 1 4.6365 -0.4789 -2.8643 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271648321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:55 Heat of formation + Delta-G solvation = 45.800942 kcal Electronic energy + Delta-G solvation = -19200.421181 eV Core-core repulsion = 16299.315648 eV Total energy + Delta-G solvation = -2901.105533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.55884 -38.26654 -35.36695 -34.69458 -33.85224 -31.87458 -31.56591 -29.72376 -27.99636 -26.41866 -24.37242 -23.41143 -22.37061 -21.47231 -19.62740 -18.92721 -17.94655 -17.14106 -17.11431 -16.67390 -16.18546 -16.03987 -15.33969 -15.26940 -15.06095 -14.91761 -14.39861 -14.17280 -14.02494 -13.75659 -13.50655 -13.41129 -13.32988 -13.07929 -12.91488 -12.64334 -12.19065 -11.91892 -11.88346 -11.82332 -11.56264 -11.17301 -11.12254 -10.78646 -10.57219 -9.76558 -9.63823 -9.42597 -9.00204 -8.52839 -6.24244 0.43377 0.55725 1.11650 1.31392 1.47536 1.72985 1.89983 1.95845 2.24310 2.67387 2.85099 2.90222 3.12135 3.44101 3.87237 3.97624 4.04293 4.18274 4.21712 4.25940 4.32266 4.36577 4.41022 4.50066 4.67036 4.71831 4.72701 4.78247 4.85613 5.00491 5.10337 5.17485 5.21173 5.23887 5.26896 5.60487 5.65655 5.68812 5.68962 6.03087 6.08891 6.16124 6.40588 6.72822 6.91132 8.60346 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.023948 B = 0.002862 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.898842 B = 9779.906232 C =10500.073309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.190 4.190 3 C 0.004 3.996 4 C 0.140 3.860 5 H 0.051 0.949 6 N -0.677 5.677 7 C 0.057 3.943 8 C -0.084 4.084 9 C -0.068 4.068 10 S -0.218 6.218 11 C -0.523 4.523 12 H 0.049 0.951 13 C 0.037 3.963 14 N -0.923 5.923 15 Si 0.926 3.074 16 H -0.261 1.261 17 H -0.262 1.262 18 H -0.229 1.229 19 C -0.099 4.099 20 C -0.107 4.107 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.121 4.121 25 H 0.228 0.772 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.347 0.653 29 H 0.026 0.974 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.277 0.723 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.340 -16.528 3.060 29.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.190 4.190 3 C -0.033 4.033 4 C 0.030 3.970 5 H 0.069 0.931 6 N -0.309 5.309 7 C -0.073 4.073 8 C -0.123 4.123 9 C -0.217 4.217 10 S 0.010 5.990 11 C -0.670 4.670 12 H 0.068 0.932 13 C -0.168 4.168 14 N -0.561 5.561 15 Si 0.747 3.253 16 H -0.185 1.185 17 H -0.187 1.187 18 H -0.152 1.152 19 C -0.100 4.100 20 C -0.125 4.125 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.146 4.146 24 C -0.140 4.140 25 H 0.245 0.755 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.166 0.834 29 H 0.044 0.956 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 24.560 -15.766 4.189 29.483 hybrid contribution -1.508 -0.195 -1.653 2.246 sum 23.052 -15.960 2.537 28.152 Atomic orbital electron populations 1.25459 0.96879 1.01262 1.00611 1.23399 0.95179 0.99699 1.00738 1.18870 0.83835 1.00269 1.00375 1.20279 0.90859 0.89131 0.96719 0.93128 1.60523 1.03170 1.03323 1.63912 1.22235 0.91497 0.96205 0.97397 1.21156 0.92777 0.96420 1.01915 1.23042 1.00347 0.95720 1.02571 1.83824 1.18694 1.17657 1.78791 1.22340 0.99629 1.01886 1.43158 0.93242 1.25796 0.94523 1.01610 0.94839 1.70038 1.10979 1.29725 1.45336 0.85701 0.79779 0.78983 0.80803 1.18544 1.18671 1.15229 1.19799 0.93821 0.99268 0.97088 1.21199 0.93869 0.98774 0.98704 1.21455 0.94824 0.99285 0.99137 1.21500 1.01006 0.96697 0.95044 1.21399 0.93482 0.99954 0.99736 1.21249 0.95645 0.98961 0.98105 0.75497 0.88589 0.87889 0.83366 0.95559 0.89583 0.90957 0.91255 0.91984 0.91787 0.91376 0.85135 0.84507 0.84249 0.84282 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -5.24 17.64 74.32 1.31 -3.93 16 2 C -0.19 -4.37 11.25 31.13 0.35 -4.02 16 3 C 0.00 0.06 5.37 28.79 0.15 0.22 16 4 C 0.14 2.58 2.45 44.17 0.11 2.69 16 5 H 0.05 1.00 7.66 -2.39 -0.02 0.98 16 6 N -0.68 -14.47 5.65 -495.42 -2.80 -17.27 16 7 C 0.06 1.48 5.25 86.30 0.45 1.94 16 8 C -0.08 -2.57 5.48 30.59 0.17 -2.40 16 9 C -0.07 -2.68 5.67 71.98 0.41 -2.27 16 10 S -0.22 -10.70 19.41 -56.49 -1.10 -11.80 16 11 C -0.52 -31.38 10.04 67.95 0.68 -30.70 16 12 H 0.05 3.23 8.03 -2.91 -0.02 3.21 16 13 C 0.04 2.20 5.50 84.86 0.47 2.67 16 14 N -0.92 -57.48 13.97 21.65 0.30 -57.18 16 15 Si 0.93 44.67 27.74 68.60 1.90 46.57 16 16 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.23 -10.65 6.74 99.48 0.67 -9.98 16 19 C -0.10 -1.63 4.72 -19.87 -0.09 -1.73 16 20 C -0.11 -1.71 9.00 22.27 0.20 -1.50 16 21 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 22 C -0.12 -1.55 10.05 22.27 0.22 -1.32 16 23 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 24 C -0.12 -1.79 9.67 22.27 0.22 -1.58 16 25 H 0.23 4.34 7.80 -4.41 -0.03 4.30 16 26 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.35 6.99 7.98 -89.70 -0.72 6.27 16 29 H 0.03 0.69 8.06 -2.39 -0.02 0.67 16 30 H 0.09 2.36 4.13 -2.38 -0.01 2.35 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 2.48 8.14 -2.40 -0.02 2.46 16 34 H 0.06 2.57 8.14 -2.40 -0.02 2.55 16 35 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.13 2.09 7.71 -2.91 -0.02 2.07 16 37 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.13 1.61 8.04 -2.91 -0.02 1.58 16 Total: -1.00 -68.24 350.64 3.66 -64.58 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.26 Total: 19.99 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 5.10 Total: -44.90 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -2.50 Total: -74.45 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.57 kcal Atomic # 16 Polarization: -10.70 SS G_CDS: -1.10 Total: -11.80 kcal Total: -68.24 3.66 -64.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271648321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.380 kcal (2) G-P(sol) polarization free energy of solvation -68.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds