Wall clock time and date at job start Tue Mar 31 2020 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48503 * 109.47133 * 239.99690 * 3 2 1 5 5 H 1.48505 * 109.46944 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47369 * 119.99714 * 3 2 1 7 7 C 1.37880 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99709 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00280 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47267 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.46987 * 180.02562 * 10 9 7 12 12 C 1.46902 * 110.99949 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47206 * 179.97438 * 12 11 10 14 14 C 1.35076 * 126.07700 * 255.60579 * 13 12 11 15 15 N 1.35036 * 107.98107 * 179.97438 * 14 13 12 16 16 H 0.97002 * 125.93311 * 180.02562 * 15 14 13 17 17 N 1.40063 * 108.14233 * 359.97438 * 15 14 13 18 18 C 1.31626 * 108.10893 * 359.74363 * 17 15 14 19 19 C 1.48400 * 126.04307 * 180.26477 * 18 17 15 20 20 C 1.39318 * 120.13470 * 227.89010 * 19 18 17 21 21 C 1.38006 * 119.90391 * 179.70035 * 20 19 18 22 22 C 1.38352 * 120.16991 * 0.57746 * 21 20 19 23 23 C 1.38261 * 120.26914 * 359.72344 * 22 21 20 24 24 C 1.38274 * 120.08833 * 359.97375 * 23 22 21 25 25 F 1.35099 * 120.08329 * 180.02562 * 24 23 22 26 26 H 0.96996 * 120.00063 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46972 * 59.99267 * 9 7 2 28 28 H 1.09001 * 109.46942 * 300.00019 * 9 7 2 29 29 H 1.08996 * 109.46934 * 60.00155 * 10 9 7 30 30 H 1.08995 * 109.47099 * 300.00005 * 10 9 7 31 31 H 1.00895 * 111.00433 * 56.04028 * 11 10 9 32 32 H 1.08996 * 109.47123 * 59.99274 * 12 11 10 33 33 H 1.08999 * 109.46815 * 299.99564 * 12 11 10 34 34 H 1.08007 * 126.01313 * 359.93674 * 14 13 12 35 35 H 1.08002 * 120.04641 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.91783 * 180.28111 * 21 20 19 37 37 H 1.08005 * 119.86626 * 179.70357 * 22 21 20 38 38 H 1.07997 * 119.95679 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 -0.0001 12 6 2.4353 -6.0759 0.0005 13 6 1.6472 -7.3605 0.0005 14 6 1.4622 -8.1802 1.0580 15 7 0.7018 -9.2196 0.6518 16 1 0.4114 -9.9624 1.2039 17 7 0.4042 -9.0383 -0.7047 18 6 0.9668 -7.9161 -1.1006 19 6 0.8994 -7.3400 -2.4666 20 6 2.0599 -6.8949 -3.0960 21 6 1.9926 -6.3657 -4.3687 22 6 0.7742 -6.2651 -5.0164 23 6 -0.3828 -6.6989 -4.3960 24 6 -0.3271 -7.2366 -3.1234 25 9 -1.4576 -7.6610 -2.5175 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8905 30 1 2.8719 -3.6043 -0.8894 31 1 0.8745 -4.9842 -0.7816 32 1 3.0627 -6.0349 0.8909 33 1 3.0638 -6.0349 -0.8891 34 1 1.8541 -8.0309 2.0534 35 1 3.0114 -6.9680 -2.5903 36 1 2.8927 -6.0247 -4.8586 37 1 0.7266 -5.8457 -6.0106 38 1 -1.3312 -6.6176 -4.9061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273008941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:11 Heat of formation + Delta-G solvation = 46.433954 kcal Electronic energy + Delta-G solvation = -22116.211373 eV Core-core repulsion = 18681.212864 eV Total energy + Delta-G solvation = -3434.998509 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.77353 -41.25234 -38.79831 -35.95637 -33.26761 -32.70893 -31.07538 -30.65637 -29.66175 -28.62140 -25.14685 -23.79634 -23.13340 -22.66248 -20.95368 -20.41590 -19.74545 -17.71993 -17.52387 -16.28009 -16.22546 -15.94160 -15.51800 -15.25973 -14.66423 -14.44897 -14.41126 -13.95629 -13.62713 -13.44728 -13.17354 -13.08460 -12.35486 -12.22589 -12.07418 -11.94457 -11.89918 -11.19926 -11.04294 -10.87933 -10.61132 -10.53129 -9.94683 -9.89311 -9.38237 -9.14468 -8.96449 -8.70270 -8.41686 -8.30379 -7.67724 -5.95246 -3.97932 0.88784 1.15039 1.90222 2.66011 2.78336 3.35673 3.40121 3.42271 3.56519 4.19933 4.34386 4.48040 4.67795 4.80610 4.86315 5.09813 5.17402 5.18493 5.32557 5.39922 5.40493 5.62213 5.72050 5.91927 5.95075 6.03313 6.17926 6.19442 6.29908 6.39930 6.46887 6.53999 6.79691 7.04057 7.20175 7.54888 7.57947 7.79744 7.88567 8.02907 8.15051 8.48407 9.09456 9.65467 11.16172 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.004171 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.243462 B = 6710.954839 C = 7640.797022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.686 5.686 12 C 0.131 3.869 13 C -0.206 4.206 14 C 0.070 3.930 15 N -0.476 5.476 16 H 0.440 0.560 17 N -0.276 5.276 18 C 0.118 3.882 19 C -0.046 4.046 20 C -0.069 4.069 21 C -0.129 4.129 22 C -0.083 4.083 23 C -0.155 4.155 24 C 0.125 3.875 25 F -0.130 7.130 26 H 0.261 0.739 27 H 0.013 0.987 28 H 0.024 0.976 29 H 0.058 0.942 30 H 0.015 0.985 31 H 0.336 0.664 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.180 0.820 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 -18.813 -5.564 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.317 5.317 12 C 0.001 3.999 13 C -0.217 4.217 14 C -0.077 4.077 15 N -0.185 5.185 16 H 0.284 0.716 17 N -0.100 5.100 18 C -0.048 4.048 19 C -0.049 4.049 20 C -0.089 4.089 21 C -0.147 4.147 22 C -0.101 4.101 23 C -0.174 4.174 24 C 0.104 3.896 25 F -0.108 7.108 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.153 0.847 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.197 0.803 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.761 -19.713 -5.150 20.561 hybrid contribution 0.797 1.231 -0.089 1.469 sum 3.557 -18.482 -5.239 19.536 Atomic orbital electron populations 1.69965 1.06040 1.26635 1.50602 1.24997 0.94807 0.99143 0.95363 0.86668 0.79569 0.83229 0.78561 1.20300 1.21310 1.20249 1.21141 0.92907 0.91028 1.50906 0.92817 1.19051 0.94033 0.90409 0.97677 1.22156 0.96960 0.88519 0.98540 1.60627 1.19541 1.01615 1.49916 1.20208 0.92874 0.86424 1.00378 1.20093 1.08946 1.00603 0.92082 1.22314 0.96239 0.89192 0.99905 1.46148 1.42219 1.21388 1.08696 0.71639 1.77582 1.22732 1.18510 0.91134 1.20323 0.97857 0.93348 0.93282 1.17807 0.92746 1.02972 0.91349 1.21079 0.97145 0.96108 0.94519 1.21132 0.98437 1.00273 0.94848 1.21098 0.91615 0.97331 1.00086 1.21101 1.00502 1.01939 0.93881 1.17693 0.81733 0.98418 0.91736 1.91527 1.48782 1.87372 1.83105 0.92973 0.96892 0.95745 0.92368 0.96686 0.84679 0.90725 0.95010 0.80327 0.84710 0.84897 0.84812 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.68 5.23 -27.89 -0.15 0.54 16 10 C 0.07 1.41 5.62 -3.82 -0.02 1.38 16 11 N -0.69 -12.74 6.49 -115.06 -0.75 -13.49 16 12 C 0.13 1.93 5.75 -4.97 -0.03 1.90 16 13 C -0.21 -2.88 5.61 -104.76 -0.59 -3.47 16 14 C 0.07 0.80 11.87 -17.27 -0.20 0.60 16 15 N -0.48 -5.33 7.35 30.42 0.22 -5.11 16 16 H 0.44 3.24 8.96 -182.62 -1.64 1.61 16 17 N -0.28 -4.11 12.56 33.43 0.42 -3.69 16 18 C 0.12 1.77 6.34 -82.78 -0.52 1.25 16 19 C -0.05 -0.66 5.69 -104.83 -0.60 -1.25 16 20 C -0.07 -0.84 8.86 -39.26 -0.35 -1.19 16 21 C -0.13 -1.35 10.03 -39.62 -0.40 -1.75 16 22 C -0.08 -0.85 10.04 -39.53 -0.40 -1.25 16 23 C -0.16 -1.84 10.02 -39.56 -0.40 -2.24 16 24 C 0.12 1.81 7.28 -39.09 -0.28 1.52 16 25 F -0.13 -2.10 16.67 2.25 0.04 -2.06 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.34 6.50 8.71 -39.29 -0.34 6.16 16 32 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 33 H 0.03 0.44 6.08 -51.93 -0.32 0.13 16 34 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 35 H 0.14 1.46 6.70 -52.49 -0.35 1.11 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -34.14 333.54 -9.66 -43.80 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.99 Total: 2.91 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -4.34 Total: -17.57 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.63 Total: -48.82 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.14 -9.66 -43.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273008941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.230 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds