Wall clock time and date at job start Tue Mar 31 2020 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48503 * 109.47133 * 239.99690 * 3 2 1 5 5 H 1.48505 * 109.46944 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47369 * 119.99714 * 3 2 1 7 7 C 1.37880 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99709 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00280 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47267 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.46987 * 180.02562 * 10 9 7 12 12 C 1.46902 * 110.99949 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47206 * 179.97438 * 12 11 10 14 14 C 1.35076 * 126.07700 * 255.60579 * 13 12 11 15 15 N 1.35036 * 107.98107 * 179.97438 * 14 13 12 16 16 H 0.97002 * 125.93311 * 180.02562 * 15 14 13 17 17 N 1.40063 * 108.14233 * 359.97438 * 15 14 13 18 18 C 1.31626 * 108.10893 * 359.74363 * 17 15 14 19 19 C 1.48400 * 126.04307 * 180.26477 * 18 17 15 20 20 C 1.39318 * 120.13470 * 227.89010 * 19 18 17 21 21 C 1.38006 * 119.90391 * 179.70035 * 20 19 18 22 22 C 1.38352 * 120.16991 * 0.57746 * 21 20 19 23 23 C 1.38261 * 120.26914 * 359.72344 * 22 21 20 24 24 C 1.38274 * 120.08833 * 359.97375 * 23 22 21 25 25 F 1.35099 * 120.08329 * 180.02562 * 24 23 22 26 26 H 0.96996 * 120.00063 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46972 * 59.99267 * 9 7 2 28 28 H 1.09001 * 109.46942 * 300.00019 * 9 7 2 29 29 H 1.08996 * 109.46934 * 60.00155 * 10 9 7 30 30 H 1.08995 * 109.47099 * 300.00005 * 10 9 7 31 31 H 1.00895 * 111.00433 * 56.04028 * 11 10 9 32 32 H 1.08996 * 109.47123 * 59.99274 * 12 11 10 33 33 H 1.08999 * 109.46815 * 299.99564 * 12 11 10 34 34 H 1.08007 * 126.01313 * 359.93674 * 14 13 12 35 35 H 1.08002 * 120.04641 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.91783 * 180.28111 * 21 20 19 37 37 H 1.08005 * 119.86626 * 179.70357 * 22 21 20 38 38 H 1.07997 * 119.95679 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 -0.0001 12 6 2.4353 -6.0759 0.0005 13 6 1.6472 -7.3605 0.0005 14 6 1.4622 -8.1802 1.0580 15 7 0.7018 -9.2196 0.6518 16 1 0.4114 -9.9624 1.2039 17 7 0.4042 -9.0383 -0.7047 18 6 0.9668 -7.9161 -1.1006 19 6 0.8994 -7.3400 -2.4666 20 6 2.0599 -6.8949 -3.0960 21 6 1.9926 -6.3657 -4.3687 22 6 0.7742 -6.2651 -5.0164 23 6 -0.3828 -6.6989 -4.3960 24 6 -0.3271 -7.2366 -3.1234 25 9 -1.4576 -7.6610 -2.5175 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8905 30 1 2.8719 -3.6043 -0.8894 31 1 0.8745 -4.9842 -0.7816 32 1 3.0627 -6.0349 0.8909 33 1 3.0638 -6.0349 -0.8891 34 1 1.8541 -8.0309 2.0534 35 1 3.0114 -6.9680 -2.5903 36 1 2.8927 -6.0247 -4.8586 37 1 0.7266 -5.8457 -6.0106 38 1 -1.3312 -6.6176 -4.9061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273008941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:11 Heat of formation + Delta-G solvation = 23.534493 kcal Electronic energy + Delta-G solvation = -22117.204368 eV Core-core repulsion = 18681.212864 eV Total energy + Delta-G solvation = -3435.991504 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.89179 -42.23062 -39.69256 -37.47302 -35.12135 -33.87840 -32.52024 -31.59220 -30.61652 -30.24971 -26.79012 -24.88088 -24.55340 -23.66247 -22.42126 -21.76529 -20.75498 -18.74069 -18.50801 -18.39897 -17.25512 -16.84156 -16.75888 -16.60005 -16.38837 -15.81427 -15.31706 -15.07003 -14.90826 -14.90738 -14.32173 -14.08164 -14.07908 -13.48664 -13.45130 -13.27108 -12.87451 -12.75731 -12.73933 -12.41767 -12.13091 -11.87421 -11.62258 -11.36544 -11.26739 -10.85597 -10.52516 -9.90061 -9.73385 -9.43527 -9.08927 -8.16035 -6.27984 -0.04546 0.22989 0.95783 1.43243 1.46873 1.54642 1.63751 1.93437 2.44280 2.65766 3.17399 3.26573 3.38815 3.63616 3.79506 3.90296 4.05119 4.28203 4.34414 4.37042 4.43512 4.58274 4.66218 4.69187 4.78896 4.90387 5.04655 5.12991 5.15244 5.19969 5.29985 5.41236 5.49053 5.54064 5.71809 5.83259 5.90839 6.19315 6.36875 6.39638 6.52974 6.61632 6.89940 7.41530 8.96146 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.004171 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.243462 B = 6710.954839 C = 7640.797022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.032 3.968 10 C 0.086 3.914 11 N -0.694 5.694 12 C 0.137 3.863 13 C -0.235 4.235 14 C 0.090 3.910 15 N -0.463 5.463 16 H 0.455 0.545 17 N -0.313 5.313 18 C 0.105 3.895 19 C -0.066 4.066 20 C -0.078 4.078 21 C -0.125 4.125 22 C -0.081 4.081 23 C -0.160 4.160 24 C 0.088 3.912 25 F -0.150 7.150 26 H 0.263 0.737 27 H -0.016 1.016 28 H -0.011 1.011 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.328 0.672 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.219 0.781 35 H 0.145 0.855 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.013 -18.492 -5.757 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.005 4.005 10 C -0.043 4.043 11 N -0.324 5.324 12 C 0.008 3.992 13 C -0.247 4.247 14 C -0.058 4.058 15 N -0.173 5.173 16 H 0.303 0.697 17 N -0.137 5.137 18 C -0.060 4.060 19 C -0.068 4.068 20 C -0.097 4.097 21 C -0.143 4.143 22 C -0.099 4.099 23 C -0.179 4.179 24 C 0.068 3.932 25 F -0.128 7.128 26 H 0.071 0.929 27 H 0.002 0.998 28 H 0.008 0.992 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.145 0.855 32 H 0.109 0.891 33 H 0.060 0.940 34 H 0.235 0.765 35 H 0.163 0.837 36 H 0.181 0.819 37 H 0.185 0.815 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.037 -19.437 -5.340 20.777 hybrid contribution 0.066 1.058 -0.022 1.061 sum 5.103 -18.379 -5.363 19.813 Atomic orbital electron populations 1.70123 1.08014 1.27781 1.51586 1.26002 0.95689 1.03469 0.94658 0.85469 0.78198 0.77851 0.79319 1.18900 1.21105 1.19030 1.21594 0.93642 0.92026 1.50716 0.91709 1.18910 0.94361 0.92709 0.94560 1.21779 0.95426 0.87956 0.99144 1.60575 1.20261 1.01842 1.49724 1.20217 0.92352 0.85077 1.01548 1.20142 1.10576 1.01147 0.92824 1.22883 0.94344 0.87896 1.00693 1.46191 1.41423 1.21850 1.07850 0.69732 1.77517 1.23997 1.19223 0.92986 1.20580 0.97936 0.93500 0.93990 1.18060 0.93384 1.03759 0.91639 1.21302 0.96857 0.96210 0.95328 1.21560 0.99726 0.98803 0.94175 1.21530 0.90845 0.96223 1.01266 1.21403 1.02051 1.01349 0.93055 1.18122 0.81507 1.00504 0.93108 1.91461 1.49769 1.87945 1.83659 0.92864 0.99776 0.99215 0.91662 0.95934 0.85548 0.89139 0.94031 0.76499 0.83694 0.81929 0.81520 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.75 5.23 29.85 0.16 1.91 16 10 C 0.09 3.59 5.62 86.30 0.49 4.08 16 11 N -0.69 -25.63 6.49 -517.93 -3.36 -28.99 16 12 C 0.14 3.83 5.75 85.56 0.49 4.32 16 13 C -0.24 -6.37 5.61 -19.95 -0.11 -6.48 16 14 C 0.09 1.87 11.87 83.47 0.99 2.86 16 15 N -0.46 -9.86 7.35 -57.68 -0.42 -10.28 16 16 H 0.46 6.07 8.96 -213.34 -1.91 4.15 16 17 N -0.31 -9.41 12.56 -48.16 -0.60 -10.01 16 18 C 0.11 3.19 6.34 42.53 0.27 3.46 16 19 C -0.07 -1.91 5.69 -20.00 -0.11 -2.03 16 20 C -0.08 -1.83 8.86 22.47 0.20 -1.63 16 21 C -0.12 -2.39 10.03 22.24 0.22 -2.17 16 22 C -0.08 -1.52 10.04 22.30 0.22 -1.29 16 23 C -0.16 -3.78 10.02 22.28 0.22 -3.56 16 24 C 0.09 2.65 7.28 22.59 0.16 2.82 16 25 F -0.15 -5.17 16.67 44.97 0.75 -4.42 16 26 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 27 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.33 13.00 8.71 -89.70 -0.78 12.22 16 32 H 0.09 2.22 8.13 -2.39 -0.02 2.20 16 33 H 0.04 1.08 6.08 -2.39 -0.01 1.07 16 34 H 0.22 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.15 2.98 6.70 -2.91 -0.02 2.96 16 36 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 37 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -75.95 333.54 0.98 -74.97 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -1.59 Total: 18.36 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 3.90 Total: -28.02 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -4.10 Total: -107.06 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.75 Total: -4.42 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -75.95 0.98 -74.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273008941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.503 kcal (2) G-P(sol) polarization free energy of solvation -75.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds