Wall clock time and date at job start Tue Mar 31 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 N 1.46496 * 109.47238 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00209 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00318 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47347 * 180.02562 * 14 12 11 16 16 H 1.08995 * 109.34136 * 54.99668 * 15 14 12 17 17 O 1.42719 * 109.33294 * 295.32475 * 15 14 12 18 18 C 1.43173 * 113.16770 * 187.88139 * 17 15 14 19 19 C 1.52977 * 108.32040 * 70.94245 * 18 17 15 20 20 C 1.50742 * 109.75284 * 310.72606 * 19 18 17 21 21 C 1.38601 * 118.75806 * 196.87206 * 20 19 18 22 22 C 1.38069 * 120.27584 * 180.24524 * 21 20 19 23 23 C 1.38267 * 119.86078 * 359.97438 * 22 21 20 24 24 C 1.38059 * 119.89476 * 359.91427 * 23 22 21 25 25 C 1.37907 * 121.35320 * 16.96055 * 20 19 18 26 26 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 28 28 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 29 29 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 30 30 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 31 31 H 0.97005 * 119.99809 * 0.02562 * 11 10 9 32 32 H 1.09001 * 109.46564 * 300.00524 * 14 12 11 33 33 H 1.08998 * 109.47012 * 59.99578 * 14 12 11 34 34 H 1.08993 * 109.74108 * 311.27681 * 18 17 15 35 35 H 1.08999 * 109.67610 * 190.57152 * 18 17 15 36 36 H 1.08998 * 109.42224 * 190.63851 * 19 18 17 37 37 H 1.09007 * 109.37779 * 70.78255 * 19 18 17 38 38 H 1.08001 * 119.85969 * 0.22217 * 21 20 19 39 39 H 1.07994 * 120.07433 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.05102 * 179.91165 * 23 22 21 41 41 H 1.07996 * 119.84578 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 7 1.5126 -4.9308 -0.0075 12 6 2.1864 -6.0980 -0.0140 13 8 3.3992 -6.0980 -0.0199 14 6 1.4329 -7.4031 -0.0140 15 6 2.4271 -8.5660 -0.0214 16 1 3.1139 -8.4592 0.8182 17 8 3.1665 -8.5477 -1.2420 18 6 3.9949 -9.7024 -1.4161 19 6 3.0911 -10.9052 -1.6931 20 6 1.9878 -10.9604 -0.6674 21 6 1.2784 -12.1412 -0.5140 22 6 0.2583 -12.2249 0.4126 23 6 -0.0566 -11.1265 1.1910 24 6 0.6511 -9.9507 1.0403 25 6 1.6760 -9.8653 0.1106 26 1 -0.4851 0.8401 0.0004 27 1 0.6283 -2.5592 0.8921 28 1 0.6202 -2.5546 -0.8878 29 1 2.8677 -3.6020 -0.9008 30 1 2.8758 -3.6067 0.8792 31 1 0.5426 -4.9308 -0.0031 32 1 0.8106 -7.4632 0.8789 33 1 0.8019 -7.4584 -0.9010 34 1 4.5738 -9.8803 -0.5100 35 1 4.6676 -9.5477 -2.2597 36 1 3.6803 -11.8208 -1.6415 37 1 2.6565 -10.8095 -2.6882 38 1 1.5245 -12.9992 -1.1221 39 1 -0.2921 -13.1467 0.5297 40 1 -0.8550 -11.1881 1.9157 41 1 0.4048 -9.0933 1.6490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273035881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:18 Heat of formation + Delta-G solvation = -74.203955 kcal Electronic energy + Delta-G solvation = -22124.884068 eV Core-core repulsion = 18775.821861 eV Total energy + Delta-G solvation = -3349.062207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68566 -39.01354 -37.56533 -34.82350 -33.85347 -32.81188 -32.38032 -30.40213 -29.62052 -28.35119 -25.11945 -24.13974 -23.82680 -22.08850 -20.88878 -20.23931 -19.85769 -17.57670 -16.76842 -16.44898 -16.35106 -15.79177 -15.52536 -15.10137 -14.82925 -14.46724 -14.43284 -14.09951 -13.80096 -13.37824 -13.23039 -13.14306 -12.54278 -12.43805 -12.25194 -12.18600 -11.90817 -11.50042 -11.17397 -11.12477 -11.02171 -10.75883 -10.60366 -10.29182 -9.75462 -9.68188 -9.41218 -9.16024 -8.99223 -8.81994 -8.49881 -8.29735 -6.07783 -4.10279 1.05835 1.10602 3.10771 3.29565 3.36952 3.41688 3.43528 3.70271 3.74445 4.39743 4.41365 4.47697 4.57649 4.68220 4.85251 4.90940 5.03955 5.12752 5.18819 5.19824 5.29363 5.30439 5.41265 5.49132 5.60710 5.68588 5.73874 5.81121 5.85292 6.18355 6.24733 6.32714 6.40057 6.40928 6.72146 6.78937 7.00119 7.11703 7.55075 7.64963 7.91098 8.09354 8.30845 8.75550 8.96263 9.54522 11.03917 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033216 B = 0.002711 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.769397 B =10325.893290 C =10955.660887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.123 3.877 11 N -0.726 5.726 12 C 0.507 3.493 13 O -0.539 6.539 14 C -0.135 4.135 15 C 0.149 3.851 16 H 0.080 0.920 17 O -0.354 6.354 18 C 0.060 3.940 19 C -0.117 4.117 20 C -0.071 4.071 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.110 4.110 25 C -0.112 4.112 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.396 0.604 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 -26.150 0.099 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.376 5.376 12 C 0.292 3.708 13 O -0.416 6.416 14 C -0.175 4.175 15 C 0.091 3.909 16 H 0.097 0.903 17 O -0.272 6.272 18 C -0.017 4.017 19 C -0.154 4.154 20 C -0.071 4.071 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.128 4.128 25 C -0.112 4.112 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.230 0.770 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.807 -25.847 -0.046 25.859 hybrid contribution -0.265 0.631 0.175 0.706 sum 0.542 -25.216 0.129 25.222 Atomic orbital electron populations 1.69967 1.06084 1.26726 1.50600 1.25000 0.94895 0.99416 0.95044 0.86461 0.80186 0.83361 0.77596 1.19582 1.20939 1.20951 1.21106 0.93294 0.90421 1.51040 0.92211 1.19328 0.94231 0.91189 0.97796 1.21683 0.95991 0.81597 1.00688 1.46317 1.10416 1.06566 1.74301 1.20328 0.88311 0.85278 0.76884 1.90686 1.13831 1.87610 1.49514 1.21816 0.98502 0.91977 1.05183 1.20522 0.91798 0.89756 0.88870 0.90252 1.88184 1.59015 1.41236 1.38767 1.22574 0.92353 0.84925 1.01875 1.21190 0.95917 1.00007 0.98318 1.19531 0.97542 0.93125 0.96893 1.21065 0.96474 0.97238 0.99026 1.21117 0.97602 0.98669 0.96335 1.21115 0.99976 0.93152 0.99777 1.21127 0.95351 0.98321 0.98027 1.20300 0.97702 0.95989 0.97223 0.92928 0.95992 0.95944 0.92647 0.92704 0.77023 0.87590 0.88067 0.92692 0.88283 0.89869 0.89637 0.86071 0.86057 0.85849 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.67 5.61 -4.04 -0.02 2.64 16 11 N -0.73 -12.85 5.56 -60.30 -0.33 -13.18 16 12 C 0.51 8.73 7.70 -10.99 -0.08 8.65 16 13 O -0.54 -11.37 15.40 -9.32 -0.14 -11.51 16 14 C -0.13 -1.69 5.10 -27.88 -0.14 -1.83 16 15 C 0.15 1.92 2.28 -27.91 -0.06 1.86 16 16 H 0.08 1.09 7.95 -51.93 -0.41 0.68 16 17 O -0.35 -5.14 9.62 -50.11 -0.48 -5.62 16 18 C 0.06 0.64 6.86 37.15 0.25 0.89 16 19 C -0.12 -1.04 6.00 -27.87 -0.17 -1.20 16 20 C -0.07 -0.73 5.78 -104.59 -0.60 -1.33 16 21 C -0.12 -1.05 9.67 -39.51 -0.38 -1.43 16 22 C -0.12 -0.98 10.05 -39.63 -0.40 -1.38 16 23 C -0.12 -1.04 10.05 -39.64 -0.40 -1.44 16 24 C -0.11 -1.06 9.08 -39.50 -0.36 -1.42 16 25 C -0.11 -1.24 5.46 -104.62 -0.57 -1.81 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.40 6.00 8.47 -40.82 -0.35 5.65 16 32 H 0.11 1.02 6.32 -51.93 -0.33 0.69 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.13 1.02 6.46 -52.49 -0.34 0.68 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -33.60 340.66 -9.64 -43.24 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.04 Total: 2.00 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -3.49 Total: -11.01 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.40 Total: -38.76 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.63 Total: -17.13 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.60 -9.64 -43.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273035881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.965 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds