Wall clock time and date at job start Tue Mar 31 2020 06:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 N 1.46496 * 109.47238 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00209 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00318 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47347 * 180.02562 * 14 12 11 16 16 H 1.08995 * 109.34136 * 54.99668 * 15 14 12 17 17 O 1.42719 * 109.33294 * 295.32475 * 15 14 12 18 18 C 1.43173 * 113.16770 * 187.88139 * 17 15 14 19 19 C 1.52977 * 108.32040 * 70.94245 * 18 17 15 20 20 C 1.50742 * 109.75284 * 310.72606 * 19 18 17 21 21 C 1.38601 * 118.75806 * 196.87206 * 20 19 18 22 22 C 1.38069 * 120.27584 * 180.24524 * 21 20 19 23 23 C 1.38267 * 119.86078 * 359.97438 * 22 21 20 24 24 C 1.38059 * 119.89476 * 359.91427 * 23 22 21 25 25 C 1.37907 * 121.35320 * 16.96055 * 20 19 18 26 26 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 28 28 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 29 29 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 30 30 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 31 31 H 0.97005 * 119.99809 * 0.02562 * 11 10 9 32 32 H 1.09001 * 109.46564 * 300.00524 * 14 12 11 33 33 H 1.08998 * 109.47012 * 59.99578 * 14 12 11 34 34 H 1.08993 * 109.74108 * 311.27681 * 18 17 15 35 35 H 1.08999 * 109.67610 * 190.57152 * 18 17 15 36 36 H 1.08998 * 109.42224 * 190.63851 * 19 18 17 37 37 H 1.09007 * 109.37779 * 70.78255 * 19 18 17 38 38 H 1.08001 * 119.85969 * 0.22217 * 21 20 19 39 39 H 1.07994 * 120.07433 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.05102 * 179.91165 * 23 22 21 41 41 H 1.07996 * 119.84578 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 7 1.5126 -4.9308 -0.0075 12 6 2.1864 -6.0980 -0.0140 13 8 3.3992 -6.0980 -0.0199 14 6 1.4329 -7.4031 -0.0140 15 6 2.4271 -8.5660 -0.0214 16 1 3.1139 -8.4592 0.8182 17 8 3.1665 -8.5477 -1.2420 18 6 3.9949 -9.7024 -1.4161 19 6 3.0911 -10.9052 -1.6931 20 6 1.9878 -10.9604 -0.6674 21 6 1.2784 -12.1412 -0.5140 22 6 0.2583 -12.2249 0.4126 23 6 -0.0566 -11.1265 1.1910 24 6 0.6511 -9.9507 1.0403 25 6 1.6760 -9.8653 0.1106 26 1 -0.4851 0.8401 0.0004 27 1 0.6283 -2.5592 0.8921 28 1 0.6202 -2.5546 -0.8878 29 1 2.8677 -3.6020 -0.9008 30 1 2.8758 -3.6067 0.8792 31 1 0.5426 -4.9308 -0.0031 32 1 0.8106 -7.4632 0.8789 33 1 0.8019 -7.4584 -0.9010 34 1 4.5738 -9.8803 -0.5100 35 1 4.6676 -9.5477 -2.2597 36 1 3.6803 -11.8208 -1.6415 37 1 2.6565 -10.8095 -2.6882 38 1 1.5245 -12.9992 -1.1221 39 1 -0.2921 -13.1467 0.5297 40 1 -0.8550 -11.1881 1.9157 41 1 0.4048 -9.0933 1.6490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273035881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:17 Heat of formation + Delta-G solvation = -94.869879 kcal Electronic energy + Delta-G solvation = -22125.780210 eV Core-core repulsion = 18775.821861 eV Total energy + Delta-G solvation = -3349.958349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.55246 -40.35279 -38.41887 -36.56952 -34.81423 -34.71737 -33.19940 -31.79747 -30.76566 -29.39637 -26.82172 -25.20457 -24.68633 -23.16217 -22.55972 -21.24558 -20.98166 -18.68307 -18.35751 -17.81872 -17.33715 -16.88504 -16.55065 -16.42278 -16.35768 -16.04011 -15.31483 -15.07144 -14.93694 -14.54705 -14.35059 -14.28424 -14.06986 -13.46515 -13.32536 -13.20377 -13.06223 -12.92071 -12.63817 -12.52302 -12.38125 -12.21417 -11.87169 -11.64990 -11.54069 -11.44173 -10.81935 -10.61149 -10.54070 -9.97170 -9.69579 -9.53533 -8.24595 -6.34945 0.36658 0.45297 1.40560 1.41430 1.54751 1.72460 2.27035 2.45866 2.73788 2.88083 3.10028 3.56307 3.66718 3.83003 3.91128 4.02791 4.14541 4.24233 4.30443 4.31921 4.42936 4.50952 4.53207 4.61385 4.64649 4.69379 4.82573 4.86257 4.89677 4.98000 5.09232 5.18084 5.32032 5.51533 5.52600 5.58771 5.61245 5.64302 5.79333 6.08723 6.16643 6.21821 6.68020 6.78495 7.34400 7.35100 8.87489 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033216 B = 0.002711 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.769397 B =10325.893290 C =10955.660887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.142 3.858 11 N -0.720 5.720 12 C 0.506 3.494 13 O -0.580 6.580 14 C -0.123 4.123 15 C 0.150 3.850 16 H 0.061 0.939 17 O -0.387 6.387 18 C 0.051 3.949 19 C -0.110 4.110 20 C -0.088 4.088 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.120 4.120 25 C -0.131 4.131 26 H 0.266 0.734 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.411 0.589 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -27.612 0.264 27.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.018 3.982 11 N -0.372 5.372 12 C 0.293 3.707 13 O -0.460 6.460 14 C -0.162 4.162 15 C 0.092 3.908 16 H 0.078 0.922 17 O -0.306 6.306 18 C -0.025 4.025 19 C -0.147 4.147 20 C -0.088 4.088 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.137 4.137 25 C -0.131 4.131 26 H 0.075 0.925 27 H 0.029 0.971 28 H 0.026 0.974 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.247 0.753 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.071 0.929 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.060 -27.335 0.120 27.335 hybrid contribution -0.049 1.013 0.128 1.023 sum 0.011 -26.321 0.248 26.323 Atomic orbital electron populations 1.70062 1.07502 1.27953 1.51078 1.25871 0.95819 1.03088 0.94411 0.85393 0.78913 0.78762 0.77965 1.19084 1.20171 1.20075 1.21504 0.93536 0.92036 1.51445 0.92489 1.19133 0.94203 0.91723 0.96374 1.21172 0.95028 0.82525 0.99498 1.46149 1.11063 1.05536 1.74453 1.21139 0.88033 0.86288 0.75199 1.90666 1.15927 1.88243 1.51184 1.21848 0.98280 0.88759 1.07329 1.20455 0.91592 0.90992 0.87804 0.92176 1.88121 1.59829 1.43205 1.39436 1.22783 0.92647 0.84880 1.02193 1.21158 0.95574 0.99930 0.98072 1.19780 0.98244 0.93557 0.97216 1.21343 0.96302 0.97274 0.99356 1.21497 0.97225 0.99546 0.95502 1.21435 1.00197 0.92751 1.00104 1.21325 0.95132 0.99430 0.97850 1.20201 0.98695 0.95358 0.98845 0.92509 0.97112 0.97389 0.94106 0.93671 0.75332 0.84301 0.86750 0.92919 0.87367 0.87528 0.89449 0.83979 0.83579 0.83692 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.69 13.29 21.45 0.28 -54.41 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.55 -31.10 9.11 25.60 0.23 -30.86 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C 0.14 6.30 5.61 86.38 0.48 6.79 16 11 N -0.72 -25.60 5.56 -463.07 -2.57 -28.17 16 12 C 0.51 17.51 7.70 87.66 0.68 18.19 16 13 O -0.58 -25.14 15.40 11.19 0.17 -24.97 16 14 C -0.12 -2.97 5.10 29.85 0.15 -2.82 16 15 C 0.15 3.87 2.28 29.83 0.07 3.94 16 16 H 0.06 1.72 7.95 -2.39 -0.02 1.71 16 17 O -0.39 -11.42 9.62 -134.75 -1.30 -12.72 16 18 C 0.05 1.10 6.86 71.97 0.49 1.59 16 19 C -0.11 -1.82 6.00 29.85 0.18 -1.64 16 20 C -0.09 -1.68 5.78 -19.84 -0.11 -1.79 16 21 C -0.12 -1.87 9.67 22.32 0.22 -1.66 16 22 C -0.12 -1.61 10.05 22.24 0.22 -1.38 16 23 C -0.13 -1.82 10.05 22.23 0.22 -1.60 16 24 C -0.12 -2.08 9.08 22.32 0.20 -1.88 16 25 C -0.13 -2.77 5.46 -19.86 -0.11 -2.88 16 26 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 2.08 8.14 -2.39 -0.02 2.07 16 31 H 0.41 12.22 8.47 -92.70 -0.79 11.43 16 32 H 0.14 2.40 6.32 -2.39 -0.02 2.38 16 33 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.05 1.11 8.07 -2.39 -0.02 1.09 16 35 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.39 8.14 -2.38 -0.02 1.38 16 38 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.14 1.94 6.46 -2.91 -0.02 1.92 16 Total: -1.00 -73.02 340.66 2.40 -70.62 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.24 Total: 17.32 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 3.54 Total: -13.83 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -2.29 Total: -82.58 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.12 Total: -37.69 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -73.02 2.40 -70.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273035881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.251 kcal (2) G-P(sol) polarization free energy of solvation -73.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds