Wall clock time and date at job start Tue Mar 31 2020 06:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99806 * 2 1 4 4 H 1.48501 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46998 * 299.99576 * 3 2 1 6 6 H 1.48501 * 109.47304 * 59.99357 * 3 2 1 7 7 C 1.37874 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00106 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99785 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46824 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.46894 * 180.02562 * 10 9 7 12 12 C 1.34773 * 119.99886 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00404 * 359.97438 * 12 11 10 14 14 C 1.47543 * 119.99749 * 179.97438 * 12 11 10 15 15 C 1.39406 * 120.31985 * 0.02562 * 14 12 11 16 16 C 1.38472 * 120.52916 * 179.97438 * 15 14 12 17 17 C 1.38073 * 119.93903 * 359.82122 * 16 15 14 18 18 C 1.38763 * 119.99776 * 0.32489 * 17 16 15 19 19 C 1.38388 * 120.71517 * 359.74113 * 18 17 16 20 20 O 1.35655 * 120.27441 * 180.02562 * 19 18 17 21 21 C 1.50710 * 122.46357 * 180.65227 * 17 16 15 22 22 C 1.52710 * 110.60200 * 342.17814 * 21 17 16 23 23 C 1.53326 * 108.37590 * 51.23309 * 22 21 17 24 24 C 1.50686 * 117.55830 * 179.76805 * 16 15 14 25 25 H 0.97007 * 119.99953 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46865 * 60.00285 * 9 7 2 27 27 H 1.08998 * 109.47322 * 300.00286 * 9 7 2 28 28 H 1.09003 * 109.47106 * 60.00507 * 10 9 7 29 29 H 1.08998 * 109.47465 * 300.00272 * 10 9 7 30 30 H 0.97004 * 119.99955 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.73770 * 359.92031 * 15 14 12 32 32 H 1.07999 * 119.64055 * 179.73192 * 18 17 16 33 33 H 0.96709 * 113.99681 * 270.02483 * 20 19 18 34 34 H 1.09002 * 109.25403 * 221.88657 * 21 17 16 35 35 H 1.08996 * 109.24199 * 102.47161 * 21 17 16 36 36 H 1.09001 * 109.69004 * 291.51065 * 22 21 17 37 37 H 1.09001 * 109.67905 * 170.95135 * 22 21 17 38 38 H 1.09001 * 109.68064 * 49.69548 * 23 22 21 39 39 H 1.09001 * 109.68311 * 170.21046 * 23 22 21 40 40 H 1.09003 * 109.24581 * 41.99375 * 24 16 15 41 41 H 1.08997 * 109.21919 * 282.55126 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 -0.0001 12 6 2.1868 -6.0979 0.0003 13 8 3.4026 -6.0980 0.0007 14 6 1.4490 -7.3757 0.0003 15 6 0.0550 -7.3834 -0.0007 16 6 -0.6417 -8.5801 -0.0013 17 6 0.0455 -9.7776 -0.0046 18 6 1.4331 -9.7812 -0.0006 19 6 2.1430 -8.5933 0.0015 20 8 3.4995 -8.6072 0.0049 21 6 -0.6546 -11.1121 -0.0199 22 6 -2.1128 -10.9588 0.4072 23 6 -2.7480 -9.8448 -0.4332 24 6 -2.1470 -8.5104 0.0030 25 1 -0.4850 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 2.8719 -3.6043 0.8906 29 1 2.8720 -3.6043 -0.8894 30 1 0.5428 -4.9308 0.0000 31 1 -0.4859 -6.4487 -0.0002 32 1 1.9649 -10.7212 0.0012 33 1 3.8905 -8.6118 0.8894 34 1 -0.1487 -11.7914 0.6662 35 1 -0.6168 -11.5261 -1.0275 36 1 -2.1601 -10.6942 1.4635 37 1 -2.6450 -11.8950 0.2385 38 1 -2.5365 -10.0153 -1.4888 39 1 -3.8260 -9.8328 -0.2722 40 1 -2.4724 -7.7283 -0.6830 41 1 -2.4923 -8.2725 1.0091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273133688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:08 Heat of formation + Delta-G solvation = -84.340801 kcal Electronic energy + Delta-G solvation = -22202.718759 eV Core-core repulsion = 18853.216985 eV Total energy + Delta-G solvation = -3349.501774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65217 -38.89973 -37.65115 -35.21794 -34.76193 -32.99076 -32.60443 -30.54264 -29.26656 -28.55278 -25.14430 -24.08974 -23.06562 -22.49365 -21.18181 -20.59776 -19.51752 -18.00270 -17.01175 -16.58394 -16.24107 -15.67535 -14.94358 -14.89248 -14.69262 -14.64307 -14.43784 -14.14758 -14.00124 -13.28650 -13.13163 -12.91346 -12.82290 -12.62974 -12.33520 -12.24964 -11.31053 -11.19458 -11.18836 -11.04197 -10.97271 -10.80914 -10.63364 -10.61852 -10.33366 -9.76060 -9.43053 -9.15977 -8.96765 -8.58714 -8.47766 -8.30242 -6.09723 -4.12315 0.76836 1.11423 2.97582 3.28427 3.35895 3.40996 3.65920 3.77917 4.12949 4.36164 4.41110 4.43987 4.59016 4.70016 4.81067 4.90217 5.05704 5.22940 5.24148 5.27520 5.28779 5.45230 5.50804 5.60667 5.68644 5.69774 5.73779 5.86569 6.00102 6.09642 6.17240 6.35723 6.36783 6.40807 6.63727 6.74308 6.92282 7.51677 7.61284 7.71243 7.88807 8.02205 8.27972 8.67114 8.93869 9.52583 11.01959 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.003196 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.100388 B = 8759.038078 C = 9940.352299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.123 3.877 11 N -0.719 5.719 12 C 0.547 3.453 13 O -0.533 6.533 14 C -0.158 4.158 15 C -0.071 4.071 16 C -0.095 4.095 17 C -0.042 4.042 18 C -0.160 4.160 19 C 0.162 3.838 20 O -0.477 6.477 21 C -0.083 4.083 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.081 4.081 25 H 0.261 0.739 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.395 0.605 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.393 0.607 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.073 -23.711 1.656 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.369 5.369 12 C 0.334 3.666 13 O -0.411 6.411 14 C -0.161 4.161 15 C -0.089 4.089 16 C -0.095 4.095 17 C -0.042 4.042 18 C -0.179 4.179 19 C 0.116 3.884 20 O -0.288 6.288 21 C -0.119 4.119 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.118 4.118 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.230 0.770 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.251 0.749 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.379 -23.540 1.051 24.170 hybrid contribution 0.062 1.064 0.462 1.161 sum -5.316 -22.477 1.513 23.146 Atomic orbital electron populations 1.69965 1.06088 1.26754 1.50520 1.24997 0.94901 0.99426 0.94995 0.86456 0.80188 0.83315 0.77609 1.19571 1.20924 1.20937 1.21092 0.93307 0.90347 1.51158 0.92165 1.19336 0.94224 0.91157 0.97833 1.21738 0.96048 0.81281 1.00885 1.46280 1.10422 1.06465 1.73766 1.18059 0.87391 0.83519 0.77666 1.90770 1.13074 1.87497 1.49755 1.20521 0.93954 0.94133 1.07541 1.21331 0.92508 0.98348 0.96759 1.19548 0.95896 0.91883 1.02171 1.19639 0.92638 0.94744 0.97178 1.21372 0.93743 0.97793 1.04958 1.18348 0.83637 0.90604 0.95819 1.84752 1.14718 1.96048 1.33266 1.20537 0.95533 0.93511 1.02365 1.21557 0.94922 0.98996 1.00312 1.21554 0.99778 0.94330 1.00129 1.20489 0.90357 0.98468 1.02481 0.92908 0.95931 0.95932 0.92467 0.92447 0.77044 0.85062 0.85103 0.74948 0.90528 0.90265 0.91449 0.91371 0.91526 0.91273 0.90330 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.68 5.61 -4.04 -0.02 2.66 16 11 N -0.72 -13.27 5.51 -61.35 -0.34 -13.61 16 12 C 0.55 10.18 7.77 -12.47 -0.10 10.09 16 13 O -0.53 -11.59 15.19 -16.47 -0.25 -11.84 16 14 C -0.16 -2.38 5.88 -104.95 -0.62 -3.00 16 15 C -0.07 -0.88 9.10 -39.06 -0.36 -1.23 16 16 C -0.09 -1.01 5.74 -104.60 -0.60 -1.61 16 17 C -0.04 -0.42 5.75 -104.48 -0.60 -1.02 16 18 C -0.16 -1.77 9.53 -39.33 -0.37 -2.15 16 19 C 0.16 2.26 6.71 -38.81 -0.26 2.00 16 20 O -0.48 -6.88 11.61 -40.43 -0.47 -7.35 16 21 C -0.08 -0.59 5.66 -28.03 -0.16 -0.75 16 22 C -0.12 -0.75 5.97 -26.71 -0.16 -0.91 16 23 C -0.12 -0.81 5.98 -26.71 -0.16 -0.97 16 24 C -0.08 -0.67 5.66 -28.03 -0.16 -0.82 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.39 6.32 6.51 -40.82 -0.27 6.05 16 31 H 0.13 1.46 6.38 -52.49 -0.33 1.13 16 32 H 0.13 1.18 8.05 -52.49 -0.42 0.76 16 33 H 0.39 4.11 9.06 45.56 0.41 4.53 16 34 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -33.46 339.06 -9.57 -43.03 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.22 Total: 4.49 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -4.12 Total: -10.87 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.40 Total: -39.03 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.72 Total: -19.19 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.46 -9.57 -43.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273133688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.312 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds