Wall clock time and date at job start Tue Mar 31 2020 06:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99806 * 2 1 4 4 H 1.48501 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46998 * 299.99576 * 3 2 1 6 6 H 1.48501 * 109.47304 * 59.99357 * 3 2 1 7 7 C 1.37874 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00106 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99785 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46824 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.46894 * 180.02562 * 10 9 7 12 12 C 1.34773 * 119.99886 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00404 * 359.97438 * 12 11 10 14 14 C 1.47543 * 119.99749 * 179.97438 * 12 11 10 15 15 C 1.39406 * 120.31985 * 0.02562 * 14 12 11 16 16 C 1.38472 * 120.52916 * 179.97438 * 15 14 12 17 17 C 1.38073 * 119.93903 * 359.82122 * 16 15 14 18 18 C 1.38763 * 119.99776 * 0.32489 * 17 16 15 19 19 C 1.38388 * 120.71517 * 359.74113 * 18 17 16 20 20 O 1.35655 * 120.27441 * 180.02562 * 19 18 17 21 21 C 1.50710 * 122.46357 * 180.65227 * 17 16 15 22 22 C 1.52710 * 110.60200 * 342.17814 * 21 17 16 23 23 C 1.53326 * 108.37590 * 51.23309 * 22 21 17 24 24 C 1.50686 * 117.55830 * 179.76805 * 16 15 14 25 25 H 0.97007 * 119.99953 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46865 * 60.00285 * 9 7 2 27 27 H 1.08998 * 109.47322 * 300.00286 * 9 7 2 28 28 H 1.09003 * 109.47106 * 60.00507 * 10 9 7 29 29 H 1.08998 * 109.47465 * 300.00272 * 10 9 7 30 30 H 0.97004 * 119.99955 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.73770 * 359.92031 * 15 14 12 32 32 H 1.07999 * 119.64055 * 179.73192 * 18 17 16 33 33 H 0.96709 * 113.99681 * 270.02483 * 20 19 18 34 34 H 1.09002 * 109.25403 * 221.88657 * 21 17 16 35 35 H 1.08996 * 109.24199 * 102.47161 * 21 17 16 36 36 H 1.09001 * 109.69004 * 291.51065 * 22 21 17 37 37 H 1.09001 * 109.67905 * 170.95135 * 22 21 17 38 38 H 1.09001 * 109.68064 * 49.69548 * 23 22 21 39 39 H 1.09001 * 109.68311 * 170.21046 * 23 22 21 40 40 H 1.09003 * 109.24581 * 41.99375 * 24 16 15 41 41 H 1.08997 * 109.21919 * 282.55126 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 -0.0001 12 6 2.1868 -6.0979 0.0003 13 8 3.4026 -6.0980 0.0007 14 6 1.4490 -7.3757 0.0003 15 6 0.0550 -7.3834 -0.0007 16 6 -0.6417 -8.5801 -0.0013 17 6 0.0455 -9.7776 -0.0046 18 6 1.4331 -9.7812 -0.0006 19 6 2.1430 -8.5933 0.0015 20 8 3.4995 -8.6072 0.0049 21 6 -0.6546 -11.1121 -0.0199 22 6 -2.1128 -10.9588 0.4072 23 6 -2.7480 -9.8448 -0.4332 24 6 -2.1470 -8.5104 0.0030 25 1 -0.4850 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 2.8719 -3.6043 0.8906 29 1 2.8720 -3.6043 -0.8894 30 1 0.5428 -4.9308 0.0000 31 1 -0.4859 -6.4487 -0.0002 32 1 1.9649 -10.7212 0.0012 33 1 3.8905 -8.6118 0.8894 34 1 -0.1487 -11.7914 0.6662 35 1 -0.6168 -11.5261 -1.0275 36 1 -2.1601 -10.6942 1.4635 37 1 -2.6450 -11.8950 0.2385 38 1 -2.5365 -10.0153 -1.4888 39 1 -3.8260 -9.8328 -0.2722 40 1 -2.4724 -7.7283 -0.6830 41 1 -2.4923 -8.2725 1.0091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273133688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:08 Heat of formation + Delta-G solvation = -105.384612 kcal Electronic energy + Delta-G solvation = -22203.631287 eV Core-core repulsion = 18853.216985 eV Total energy + Delta-G solvation = -3350.414302 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.68757 -40.14615 -38.67605 -36.58858 -36.03171 -34.82504 -33.55694 -31.92102 -30.64156 -29.41008 -26.91554 -25.15536 -23.95738 -23.42748 -22.82246 -21.88485 -20.49121 -19.14905 -18.58800 -18.00610 -17.47684 -16.70958 -16.50514 -16.32066 -16.19205 -15.74630 -15.47341 -15.10442 -14.81770 -14.65652 -14.35997 -14.26033 -13.85669 -13.66924 -13.38416 -13.22066 -13.06637 -12.97444 -12.54028 -12.30674 -12.09272 -11.82901 -11.72069 -11.70043 -11.54589 -11.39538 -11.33399 -10.74063 -10.62827 -10.13985 -9.82705 -9.40883 -8.25962 -6.36519 -0.26041 0.20174 1.40041 1.40898 1.54247 1.79123 2.17742 2.42962 2.64320 3.08711 3.20722 3.56612 3.65894 3.78918 4.06376 4.11162 4.13704 4.19263 4.43706 4.44523 4.46660 4.61232 4.68829 4.76857 4.80245 4.85688 4.88721 5.04950 5.11502 5.11987 5.20314 5.23642 5.30614 5.38009 5.45629 5.51504 5.54143 5.56707 5.75847 5.81072 6.13479 6.55088 6.76193 6.78698 7.19476 7.32828 8.86181 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.003196 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.100388 B = 8759.038078 C = 9940.352299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.142 3.858 11 N -0.715 5.715 12 C 0.547 3.453 13 O -0.572 6.572 14 C -0.187 4.187 15 C -0.072 4.072 16 C -0.096 4.096 17 C -0.032 4.032 18 C -0.156 4.156 19 C 0.147 3.853 20 O -0.496 6.496 21 C -0.083 4.083 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.083 4.083 25 H 0.266 0.734 26 H 0.008 0.992 27 H 0.010 0.990 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.407 0.593 31 H 0.138 0.862 32 H 0.155 0.845 33 H 0.405 0.595 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.252 -25.341 1.774 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.018 3.982 11 N -0.366 5.366 12 C 0.336 3.664 13 O -0.453 6.453 14 C -0.191 4.191 15 C -0.091 4.091 16 C -0.097 4.097 17 C -0.032 4.032 18 C -0.175 4.175 19 C 0.101 3.899 20 O -0.309 6.309 21 C -0.120 4.120 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.120 4.120 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.029 0.971 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.244 0.756 31 H 0.155 0.845 32 H 0.172 0.828 33 H 0.264 0.736 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.584 -25.191 1.177 26.064 hybrid contribution 0.360 1.467 0.430 1.571 sum -6.224 -23.724 1.607 24.580 Atomic orbital electron populations 1.70061 1.07503 1.27990 1.50935 1.25871 0.95831 1.03088 0.94333 0.85380 0.78903 0.78686 0.77976 1.19079 1.20144 1.20063 1.21477 0.93567 0.91879 1.51641 0.92377 1.19136 0.94174 0.91671 0.96409 1.21256 0.95113 0.81959 0.99850 1.46083 1.10934 1.05546 1.74042 1.18618 0.87154 0.84427 0.76241 1.90732 1.14800 1.88125 1.51604 1.20315 0.94907 0.92547 1.11289 1.21459 0.91504 0.99667 0.96492 1.19877 0.97298 0.91367 1.01114 1.20095 0.92414 0.96112 0.94577 1.21597 0.94263 0.97544 1.04069 1.18616 0.83535 0.91211 0.96587 1.84702 1.15419 1.96134 1.34635 1.20662 0.96003 0.91752 1.03573 1.21578 0.94323 0.99674 1.00053 1.21575 1.00609 0.93447 1.00076 1.20577 0.88561 0.99755 1.03103 0.92472 0.97325 0.97127 0.93317 0.93695 0.75639 0.84474 0.82770 0.73585 0.88837 0.89070 0.91556 0.89464 0.91700 0.89856 0.90198 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.50 13.29 21.45 0.28 -54.21 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.55 -31.15 9.11 25.60 0.23 -30.92 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.22 5.09 29.85 0.15 1.37 16 10 C 0.14 6.44 5.61 86.38 0.48 6.92 16 11 N -0.71 -27.31 5.51 -466.26 -2.57 -29.88 16 12 C 0.55 21.08 7.77 86.70 0.67 21.76 16 13 O -0.57 -25.91 15.19 16.82 0.26 -25.66 16 14 C -0.19 -5.73 5.88 -20.08 -0.12 -5.85 16 15 C -0.07 -1.77 9.10 22.61 0.21 -1.57 16 16 C -0.10 -1.88 5.74 -19.85 -0.11 -2.00 16 17 C -0.03 -0.56 5.75 -19.77 -0.11 -0.67 16 18 C -0.16 -3.19 9.53 22.43 0.21 -2.97 16 19 C 0.15 4.07 6.71 22.77 0.15 4.23 16 20 O -0.50 -14.58 11.61 -68.90 -0.80 -15.38 16 21 C -0.08 -0.88 5.66 29.75 0.17 -0.71 16 22 C -0.12 -1.05 5.97 30.61 0.18 -0.87 16 23 C -0.12 -1.24 5.98 30.61 0.18 -1.06 16 24 C -0.08 -1.18 5.66 29.75 0.17 -1.01 16 25 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 26 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 27 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.41 13.42 6.51 -92.70 -0.60 12.82 16 31 H 0.14 3.05 6.38 -2.91 -0.02 3.03 16 32 H 0.15 2.36 8.05 -2.91 -0.02 2.34 16 33 H 0.40 8.82 9.06 -74.05 -0.67 8.14 16 34 H 0.09 0.74 8.12 -2.39 -0.02 0.72 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.63 8.10 -2.39 -0.02 0.61 16 37 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.06 0.71 8.10 -2.39 -0.02 0.69 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -72.53 339.06 1.91 -70.62 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -0.22 Total: 20.87 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 2.93 Total: -12.45 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -2.28 Total: -84.10 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.54 Total: -41.04 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -72.53 1.91 -70.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273133688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.765 kcal (2) G-P(sol) polarization free energy of solvation -72.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds