Wall clock time and date at job start Tue Mar 31 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46993 * 2 1 4 4 C 1.46501 * 119.99601 * 269.99295 * 3 2 1 5 5 C 1.50700 * 109.47086 * 270.00360 * 4 3 2 6 6 H 1.08002 * 120.00347 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99851 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99775 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00076 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47079 * 59.99895 * 9 7 5 11 11 H 1.48497 * 109.47301 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47055 * 300.00241 * 9 7 5 13 13 C 1.34768 * 119.99951 * 89.99622 * 3 2 1 14 14 O 1.21594 * 119.99709 * 179.97438 * 13 3 2 15 15 N 1.34776 * 120.00385 * 0.02562 * 13 3 2 16 16 C 1.39660 * 120.00066 * 180.02562 * 15 13 3 17 17 N 1.32939 * 125.26384 * 359.96682 * 16 15 13 18 18 C 1.32918 * 109.63212 * 180.02562 * 17 16 15 19 19 C 1.40623 * 132.76479 * 180.02562 * 18 17 16 20 20 C 1.36235 * 119.27023 * 180.02562 * 19 18 17 21 21 C 1.40225 * 119.60666 * 0.02562 * 20 19 18 22 22 C 1.35239 * 120.19954 * 359.97438 * 21 20 19 23 23 N 1.35859 * 120.58386 * 359.97438 * 22 21 20 24 24 N 1.31741 * 125.26462 * 180.02562 * 16 15 13 25 25 H 1.08997 * 109.47486 * 300.00276 * 1 2 3 26 26 H 1.09003 * 109.46839 * 60.00354 * 1 2 3 27 27 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47355 * 239.99190 * 2 1 3 29 29 H 1.09008 * 109.46834 * 119.99170 * 2 1 3 30 30 H 1.09004 * 109.47186 * 30.00193 * 4 3 2 31 31 H 1.08992 * 109.46783 * 150.00186 * 4 3 2 32 32 H 0.96996 * 119.99421 * 180.02562 * 8 7 5 33 33 H 0.96990 * 120.00165 * 359.97438 * 15 13 3 34 34 H 1.08002 * 120.36283 * 359.97438 * 19 18 17 35 35 H 1.08000 * 120.19474 * 180.27185 * 20 19 18 36 36 H 1.07996 * 119.89850 * 179.97438 * 21 20 19 37 37 H 1.07993 * 119.70984 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0956 7 6 4.1496 2.3902 -2.8775 8 7 3.3496 3.1263 -3.6177 9 14 5.9140 2.0972 -3.4163 10 1 6.1418 0.6406 -3.5940 11 1 6.1615 2.7970 -4.7024 12 1 6.8410 2.6205 -2.3809 13 6 2.2428 2.0166 1.1671 14 8 2.6485 3.1628 1.1671 15 7 2.0186 1.3812 2.3344 16 6 2.2508 2.0398 3.5438 17 7 2.6917 3.2880 3.6657 18 6 2.8017 3.5990 4.9533 19 6 3.2132 4.7656 5.6220 20 6 3.2209 4.7850 6.9842 21 6 2.8201 3.6450 7.6955 22 6 2.4278 2.5330 7.0334 23 7 2.4161 2.5053 5.6751 24 7 2.0679 1.5198 4.7404 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.5818 1.6876 -2.0285 31 1 2.0956 3.1409 -1.1385 32 1 3.6757 3.5166 -4.4435 33 1 1.6954 0.4667 2.3344 34 1 3.5206 5.6363 5.0618 35 1 3.5301 5.6745 7.5130 36 1 2.8248 3.6550 8.7754 37 1 2.1203 1.6596 7.5891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273574843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:49 Heat of formation + Delta-G solvation = 118.903980 kcal Electronic energy + Delta-G solvation = -22365.614426 eV Core-core repulsion = 18953.678415 eV Total energy + Delta-G solvation = -3411.936011 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.60279 -39.71410 -37.86797 -35.36822 -34.31886 -33.46142 -32.63232 -30.32685 -30.12507 -29.79158 -27.05202 -24.16229 -23.47744 -23.04619 -22.95776 -21.40949 -19.59830 -18.13342 -17.53119 -16.82896 -16.64745 -16.40549 -16.22816 -15.51036 -14.94026 -14.70143 -14.57374 -14.02228 -13.61233 -13.25011 -12.85625 -12.81510 -12.68978 -12.18733 -12.04010 -11.71949 -11.38063 -11.22300 -11.17219 -10.92828 -10.77992 -10.50339 -10.38763 -10.09375 -9.93321 -9.61486 -9.13460 -8.69159 -8.38598 -8.23286 -7.65288 -5.99908 -4.04214 0.58773 0.89444 1.87400 2.71234 2.92741 3.35781 3.37305 3.40035 3.44415 3.90913 4.04553 4.19613 4.44252 4.52167 4.56099 4.75533 5.08861 5.14896 5.26237 5.34258 5.57928 5.60080 5.67292 5.76590 5.90328 5.97052 6.05236 6.20480 6.27594 6.46441 6.58906 6.78022 6.91886 7.29062 7.51321 7.59061 7.96763 8.14770 8.27274 8.60875 8.96235 9.26555 9.60812 11.08074 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.020388 B = 0.003983 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.060267 B = 7027.768946 C = 7928.143090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.695 3.305 14 O -0.522 6.522 15 N -0.642 5.642 16 C 0.513 3.487 17 N -0.510 5.510 18 C 0.291 3.709 19 C -0.104 4.104 20 C -0.064 4.064 21 C -0.172 4.172 22 C 0.121 3.879 23 N -0.286 5.286 24 N -0.377 5.377 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.415 0.585 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 -2.924 21.818 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.340 5.340 4 C 0.144 3.856 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.395 3.605 14 O -0.392 6.392 15 N -0.300 5.300 16 C 0.146 3.854 17 N -0.243 5.243 18 C 0.036 3.964 19 C -0.126 4.126 20 C -0.090 4.090 21 C -0.195 4.195 22 C -0.009 4.009 23 N -0.061 5.061 24 N -0.218 5.218 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.175 0.825 35 H 0.165 0.835 36 H 0.175 0.825 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.256 -2.549 21.041 21.618 hybrid contribution 0.830 -0.680 -0.176 1.088 sum -3.426 -3.229 20.865 21.390 Atomic orbital electron populations 1.22261 0.96595 1.01561 1.02604 1.21417 0.93658 0.84286 1.02592 1.47622 1.67338 1.13326 1.05732 1.19257 0.96256 0.93559 0.76562 1.21431 0.96984 1.31993 1.06230 0.92505 1.24913 0.97812 0.94895 0.96372 1.69921 1.35711 1.33400 1.14371 0.86557 0.84894 0.78181 0.77773 1.20306 1.21183 1.20195 1.15875 0.80013 0.85086 0.79525 1.91043 1.48400 1.15447 1.84288 1.42239 1.69737 1.17175 1.00833 1.20079 0.91513 0.87831 0.86017 1.71232 1.27006 1.13163 1.12864 1.22012 0.96744 0.90422 0.87193 1.20359 1.02452 0.95769 0.93988 1.21184 0.95971 0.98715 0.93151 1.20853 1.05022 0.92424 1.01210 1.21481 0.98903 1.00839 0.79637 1.47520 1.41586 1.10823 1.06207 1.78638 1.38090 1.09156 0.95922 0.93149 0.91662 0.91974 0.89229 0.92495 0.94574 0.93615 0.92674 0.74678 0.82526 0.83456 0.82547 0.81529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.10 1.70 5.89 -4.04 -0.02 1.68 16 3 N -0.60 -13.26 2.46 -180.80 -0.44 -13.70 16 4 C 0.26 6.97 5.16 -5.19 -0.03 6.94 16 5 C -0.53 -15.23 9.39 -34.44 -0.32 -15.55 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 8 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 9 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.70 16.06 8.24 -86.93 -0.72 15.34 16 14 O -0.52 -14.53 14.57 5.28 0.08 -14.45 16 15 N -0.64 -12.15 5.30 -17.31 -0.09 -12.24 16 16 C 0.51 10.08 8.77 -321.35 -2.82 7.26 16 17 N -0.51 -10.69 9.39 -13.12 -0.12 -10.82 16 18 C 0.29 4.71 7.87 -156.30 -1.23 3.48 16 19 C -0.10 -1.19 10.11 -39.40 -0.40 -1.59 16 20 C -0.06 -0.46 10.07 -39.56 -0.40 -0.86 16 21 C -0.17 -1.09 9.99 -39.90 -0.40 -1.49 16 22 C 0.12 1.09 11.20 -16.84 -0.19 0.91 16 23 N -0.29 -4.13 3.89 -12.35 -0.05 -4.18 16 24 N -0.38 -6.40 12.80 29.96 0.38 -6.02 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.48 8.07 -51.93 -0.42 1.06 16 29 H 0.06 0.77 6.36 -51.92 -0.33 0.44 16 30 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 31 H 0.05 1.38 7.42 -51.93 -0.39 0.99 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.41 6.31 6.55 -40.82 -0.27 6.04 16 34 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.16 0.39 8.06 -52.49 -0.42 -0.03 16 37 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -38.29 324.20 -10.21 -48.50 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.33 Total: 1.00 kcal Atomic # 6 Polarization: 22.11 SS G_CDS: -6.24 Total: 15.87 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: 0.41 Total: -73.10 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.08 Total: -14.45 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -38.29 -10.21 -48.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273574843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.409 kcal (2) G-P(sol) polarization free energy of solvation -38.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds