Wall clock time and date at job start Tue Mar 31 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46993 * 2 1 4 4 C 1.46501 * 119.99601 * 269.99295 * 3 2 1 5 5 C 1.50700 * 109.47086 * 270.00360 * 4 3 2 6 6 H 1.08002 * 120.00347 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99851 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99775 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00076 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47079 * 59.99895 * 9 7 5 11 11 H 1.48497 * 109.47301 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47055 * 300.00241 * 9 7 5 13 13 C 1.34768 * 119.99951 * 89.99622 * 3 2 1 14 14 O 1.21594 * 119.99709 * 179.97438 * 13 3 2 15 15 N 1.34776 * 120.00385 * 0.02562 * 13 3 2 16 16 C 1.39660 * 120.00066 * 180.02562 * 15 13 3 17 17 N 1.32939 * 125.26384 * 359.96682 * 16 15 13 18 18 C 1.32918 * 109.63212 * 180.02562 * 17 16 15 19 19 C 1.40623 * 132.76479 * 180.02562 * 18 17 16 20 20 C 1.36235 * 119.27023 * 180.02562 * 19 18 17 21 21 C 1.40225 * 119.60666 * 0.02562 * 20 19 18 22 22 C 1.35239 * 120.19954 * 359.97438 * 21 20 19 23 23 N 1.35859 * 120.58386 * 359.97438 * 22 21 20 24 24 N 1.31741 * 125.26462 * 180.02562 * 16 15 13 25 25 H 1.08997 * 109.47486 * 300.00276 * 1 2 3 26 26 H 1.09003 * 109.46839 * 60.00354 * 1 2 3 27 27 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47355 * 239.99190 * 2 1 3 29 29 H 1.09008 * 109.46834 * 119.99170 * 2 1 3 30 30 H 1.09004 * 109.47186 * 30.00193 * 4 3 2 31 31 H 1.08992 * 109.46783 * 150.00186 * 4 3 2 32 32 H 0.96996 * 119.99421 * 180.02562 * 8 7 5 33 33 H 0.96990 * 120.00165 * 359.97438 * 15 13 3 34 34 H 1.08002 * 120.36283 * 359.97438 * 19 18 17 35 35 H 1.08000 * 120.19474 * 180.27185 * 20 19 18 36 36 H 1.07996 * 119.89850 * 179.97438 * 21 20 19 37 37 H 1.07993 * 119.70984 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0956 7 6 4.1496 2.3902 -2.8775 8 7 3.3496 3.1263 -3.6177 9 14 5.9140 2.0972 -3.4163 10 1 6.1418 0.6406 -3.5940 11 1 6.1615 2.7970 -4.7024 12 1 6.8410 2.6205 -2.3809 13 6 2.2428 2.0166 1.1671 14 8 2.6485 3.1628 1.1671 15 7 2.0186 1.3812 2.3344 16 6 2.2508 2.0398 3.5438 17 7 2.6917 3.2880 3.6657 18 6 2.8017 3.5990 4.9533 19 6 3.2132 4.7656 5.6220 20 6 3.2209 4.7850 6.9842 21 6 2.8201 3.6450 7.6955 22 6 2.4278 2.5330 7.0334 23 7 2.4161 2.5053 5.6751 24 7 2.0679 1.5198 4.7404 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.5818 1.6876 -2.0285 31 1 2.0956 3.1409 -1.1385 32 1 3.6757 3.5166 -4.4435 33 1 1.6954 0.4667 2.3344 34 1 3.5206 5.6363 5.0618 35 1 3.5301 5.6745 7.5130 36 1 2.8248 3.6550 8.7754 37 1 2.1203 1.6596 7.5891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273574843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:49 Heat of formation + Delta-G solvation = 94.164540 kcal Electronic energy + Delta-G solvation = -22366.687209 eV Core-core repulsion = 18953.678415 eV Total energy + Delta-G solvation = -3413.008794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.70943 -41.36145 -38.90040 -37.06999 -35.89272 -34.76245 -34.44205 -31.68630 -31.44995 -30.75613 -29.02429 -25.63200 -24.72701 -24.41628 -24.12314 -22.83151 -21.12644 -19.54685 -18.67511 -18.60439 -18.15637 -17.58431 -17.49346 -16.87246 -16.37291 -16.19582 -15.86906 -15.47172 -15.19054 -14.68468 -14.52216 -13.82631 -13.77071 -13.51972 -13.36348 -13.27326 -13.10636 -12.71053 -12.54537 -12.27730 -12.23450 -12.21422 -12.00837 -11.77408 -11.54239 -11.41052 -10.78438 -10.63204 -9.99432 -9.50872 -9.20224 -8.21584 -6.35965 -0.19427 -0.07791 0.72529 1.36016 1.41092 1.46887 1.49421 1.63325 2.27623 2.39267 2.52657 2.69285 2.99880 3.08218 3.49449 3.88399 3.99921 4.08138 4.27533 4.32370 4.41296 4.48679 4.57806 4.80383 4.91836 4.96997 4.99431 5.11424 5.17732 5.23828 5.32767 5.43803 5.52342 5.56541 5.61593 5.82482 5.93505 6.06061 6.70294 6.72031 7.12891 7.30244 7.54819 8.85403 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.020388 B = 0.003983 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.060267 B = 7027.768946 C = 7928.143090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.607 5.607 4 C 0.281 3.719 5 C -0.546 4.546 6 H 0.050 0.950 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.275 1.275 12 H -0.282 1.282 13 C 0.695 3.305 14 O -0.581 6.581 15 N -0.627 5.627 16 C 0.487 3.513 17 N -0.584 5.584 18 C 0.265 3.735 19 C -0.139 4.139 20 C -0.026 4.026 21 C -0.138 4.138 22 C 0.096 3.904 23 N -0.286 5.286 24 N -0.382 5.382 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.035 0.965 31 H -0.002 1.002 32 H 0.268 0.732 33 H 0.430 0.570 34 H 0.156 0.844 35 H 0.197 0.803 36 H 0.215 0.785 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 -3.895 25.553 26.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.342 5.342 4 C 0.160 3.840 5 C -0.585 4.585 6 H 0.069 0.931 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.200 1.200 12 H -0.208 1.208 13 C 0.395 3.605 14 O -0.455 6.455 15 N -0.286 5.286 16 C 0.119 3.881 17 N -0.319 5.319 18 C 0.014 3.986 19 C -0.161 4.161 20 C -0.052 4.052 21 C -0.160 4.160 22 C -0.032 4.032 23 N -0.061 5.061 24 N -0.224 5.224 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.053 0.947 31 H 0.016 0.984 32 H 0.077 0.923 33 H 0.272 0.728 34 H 0.173 0.827 35 H 0.214 0.786 36 H 0.231 0.769 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.682 -3.586 24.860 25.386 hybrid contribution 0.629 -0.274 -0.961 1.181 sum -3.053 -3.860 23.899 24.400 Atomic orbital electron populations 1.22180 0.94275 1.03845 1.01698 1.21783 0.95538 0.81144 1.04048 1.47499 1.67377 1.15265 1.04098 1.18703 0.95490 0.91343 0.78492 1.21685 0.97916 1.32290 1.06564 0.93147 1.25819 1.02347 0.94384 0.96332 1.70038 1.37757 1.33997 1.14786 0.85480 0.78992 0.79089 0.77292 1.18328 1.20002 1.20825 1.15973 0.79428 0.84523 0.80554 1.90986 1.50964 1.18102 1.85446 1.41683 1.69518 1.17499 0.99904 1.20201 0.93245 0.88224 0.86443 1.71048 1.29938 1.14546 1.16320 1.22439 0.97565 0.92128 0.86451 1.20677 1.04796 0.94614 0.95994 1.21861 0.91618 1.00517 0.91214 1.21662 1.00411 0.90249 1.03631 1.22497 0.99600 1.03557 0.77557 1.47666 1.41158 1.09691 1.07608 1.78447 1.38504 1.10198 0.95254 0.93193 0.93445 0.87961 0.89347 0.89405 0.94728 0.98400 0.92311 0.72839 0.82680 0.78576 0.76859 0.78300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 10.24 71.98 0.74 -3.58 16 2 C 0.10 3.17 5.89 86.38 0.51 3.67 16 3 N -0.61 -28.07 2.46 -844.20 -2.07 -30.14 16 4 C 0.28 15.87 5.16 85.63 0.44 16.31 16 5 C -0.55 -32.82 9.39 25.60 0.24 -32.58 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.62 5.46 84.66 0.46 1.08 16 8 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 9 Si 0.97 46.51 29.54 68.60 2.03 48.54 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 13 C 0.70 34.31 8.24 179.06 1.48 35.78 16 14 O -0.58 -35.08 14.57 -4.01 -0.06 -35.14 16 15 N -0.63 -25.01 5.30 -326.95 -1.73 -26.74 16 16 C 0.49 20.23 8.77 260.98 2.29 22.52 16 17 N -0.58 -26.28 9.39 -195.43 -1.84 -28.11 16 18 C 0.27 8.87 7.87 134.08 1.06 9.93 16 19 C -0.14 -3.06 10.11 22.39 0.23 -2.83 16 20 C -0.03 -0.26 10.07 22.29 0.22 -0.03 16 21 C -0.14 -0.93 9.99 22.06 0.22 -0.71 16 22 C 0.10 1.39 11.20 83.38 0.93 2.32 16 23 N -0.29 -8.10 3.89 -192.98 -0.75 -8.85 16 24 N -0.38 -13.24 12.80 -59.12 -0.76 -14.00 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 2.92 8.07 -2.39 -0.02 2.90 16 29 H 0.09 2.31 6.36 -2.38 -0.02 2.30 16 30 H 0.03 1.94 8.07 -2.38 -0.02 1.92 16 31 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.43 13.39 6.55 -92.72 -0.61 12.78 16 34 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 35 H 0.20 0.08 8.06 -2.91 -0.02 0.06 16 36 H 0.21 -0.82 8.06 -2.91 -0.02 -0.84 16 37 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -93.86 324.20 4.42 -89.45 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.50 Total: 10.21 kcal Atomic # 6 Polarization: 43.06 SS G_CDS: 8.82 Total: 51.88 kcal Atomic # 7 Polarization: -158.07 SS G_CDS: -6.86 Total: -164.93 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -0.06 Total: -35.14 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -93.86 4.42 -89.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273574843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.610 kcal (2) G-P(sol) polarization free energy of solvation -93.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds