Wall clock time and date at job start Tue Mar 31 2020 06:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99961 * 2 1 4 4 H 1.48503 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47137 * 299.99942 * 3 2 1 6 6 H 1.48499 * 109.47467 * 59.99792 * 3 2 1 7 7 C 1.37877 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99812 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99553 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46824 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.47061 * 179.97438 * 10 9 7 12 12 C 1.46890 * 110.99839 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.47735 * 34.99918 * 12 11 10 14 14 C 1.50705 * 109.47263 * 274.99798 * 12 11 10 15 15 N 1.30498 * 125.64944 * 185.02382 * 14 12 11 16 16 C 1.34129 * 109.25189 * 179.97438 * 15 14 12 17 17 C 1.34665 * 108.02445 * 359.97438 * 16 15 14 18 18 N 1.35038 * 125.64714 * 5.00200 * 14 12 11 19 19 H 0.97000 * 126.40248 * 0.02562 * 18 14 12 20 20 C 1.50702 * 109.47113 * 154.99976 * 12 11 10 21 21 C 1.38243 * 119.97240 * 39.72408 * 20 12 11 22 22 C 1.38198 * 120.02665 * 179.76714 * 21 20 12 23 23 C 1.38468 * 119.97235 * 0.51162 * 22 21 20 24 24 F 1.35098 * 120.02604 * 179.77097 * 23 22 21 25 25 C 1.38456 * 119.94633 * 359.74113 * 23 22 21 26 26 C 1.38200 * 119.97578 * 359.97438 * 25 23 22 27 27 H 0.97003 * 119.99524 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47674 * 59.99608 * 9 7 2 29 29 H 1.09005 * 109.46861 * 299.99376 * 9 7 2 30 30 H 1.08997 * 109.47389 * 59.99343 * 10 9 7 31 31 H 1.08996 * 109.46629 * 299.99522 * 10 9 7 32 32 H 1.00904 * 110.99821 * 303.95444 * 11 10 9 33 33 H 1.08008 * 125.98816 * 180.02562 * 16 15 14 34 34 H 1.07999 * 126.59397 * 180.25953 * 17 16 15 35 35 H 1.08003 * 119.99067 * 0.02562 * 21 20 12 36 36 H 1.07997 * 120.01770 * 180.25178 * 22 21 20 37 37 H 1.08003 * 120.01117 * 179.97438 * 25 23 22 38 38 H 1.07999 * 119.98781 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5108 -4.9343 0.0024 12 6 2.4352 -6.0758 0.0031 13 1 3.3180 -5.8282 0.5924 14 6 2.8476 -6.3890 -1.4122 15 7 3.5868 -7.3984 -1.7833 16 6 3.7489 -7.3622 -3.1142 17 6 3.0845 -6.2900 -3.5859 18 7 2.5132 -5.6719 -2.5064 19 1 1.9692 -4.8689 -2.5243 20 6 1.7506 -7.2763 0.6041 21 6 0.4228 -7.5305 0.3155 22 6 -0.2048 -8.6338 0.8622 23 6 0.4940 -9.4787 1.7079 24 9 -0.1198 -10.5549 2.2466 25 6 1.8223 -9.2201 2.0004 26 6 2.4494 -8.1195 1.4477 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5566 0.8904 30 1 2.8713 -3.6039 0.8922 31 1 2.8725 -3.6047 -0.8877 32 1 0.8740 -4.9837 0.7836 33 1 4.3127 -8.0696 -3.7044 34 1 3.0130 -5.9797 -4.6178 35 1 -0.1233 -6.8691 -0.3408 36 1 -1.2410 -8.8345 0.6334 37 1 2.3683 -9.8782 2.6601 38 1 3.4857 -7.9178 1.6754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275641261.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:35 Heat of formation + Delta-G solvation = 30.918543 kcal Electronic energy + Delta-G solvation = -21992.380313 eV Core-core repulsion = 18556.709005 eV Total energy + Delta-G solvation = -3435.671307 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.94357 -41.86623 -39.29837 -36.34191 -33.41776 -32.26450 -31.51573 -31.17563 -29.27720 -28.65551 -25.46696 -23.81624 -22.94853 -21.96496 -21.20037 -20.72359 -20.02079 -17.86587 -17.63462 -16.57154 -16.30077 -16.04453 -15.63685 -15.08545 -14.67786 -14.52948 -14.27319 -14.02305 -13.74819 -13.58009 -13.49830 -13.18249 -13.01109 -12.72371 -12.26975 -12.06611 -11.59680 -11.25767 -11.08791 -11.02474 -10.63430 -10.25424 -9.87814 -9.79069 -9.59085 -9.29655 -9.13081 -8.66831 -8.50560 -8.32972 -8.17883 -6.12559 -4.16004 1.05104 1.21449 2.28309 3.23265 3.27369 3.31568 3.34652 3.36236 3.64233 4.09046 4.20922 4.37774 4.61031 4.70049 4.83619 4.98665 5.24133 5.24947 5.30661 5.31270 5.48357 5.52408 5.78222 5.86434 5.91414 6.01998 6.07189 6.12907 6.20122 6.34530 6.46141 6.71892 6.82688 6.88386 7.12473 7.49007 7.56576 7.61979 7.68770 7.89067 8.26790 8.28759 8.90984 9.49215 10.98515 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.003929 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.937473 B = 7124.577078 C = 8336.523475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.026 3.974 10 C 0.059 3.941 11 N -0.692 5.692 12 C 0.211 3.789 13 H 0.077 0.923 14 C 0.230 3.770 15 N -0.493 5.493 16 C -0.035 4.035 17 C -0.062 4.062 18 N -0.543 5.543 19 H 0.430 0.570 20 C -0.085 4.085 21 C -0.066 4.066 22 C -0.157 4.157 23 C 0.096 3.904 24 F -0.144 7.144 25 C -0.156 4.156 26 C -0.065 4.065 27 H 0.261 0.739 28 H 0.024 0.976 29 H 0.017 0.983 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.354 0.646 33 H 0.165 0.835 34 H 0.173 0.827 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 -16.366 -1.156 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.068 4.068 11 N -0.326 5.326 12 C 0.099 3.901 13 H 0.095 0.905 14 C -0.036 4.036 15 N -0.214 5.214 16 C -0.184 4.184 17 C -0.197 4.197 18 N -0.145 5.145 19 H 0.270 0.730 20 C -0.087 4.087 21 C -0.084 4.084 22 C -0.176 4.176 23 C 0.076 3.924 24 F -0.123 7.123 25 C -0.175 4.175 26 C -0.084 4.084 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.190 0.810 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.836 -16.884 -1.305 17.170 hybrid contribution 0.086 1.758 0.216 1.774 sum 2.922 -15.125 -1.089 15.443 Atomic orbital electron populations 1.69970 1.06034 1.26681 1.50317 1.24986 0.94835 0.99280 0.95075 0.86536 0.80099 0.83685 0.77689 1.19736 1.20944 1.20920 1.21161 0.93034 0.90849 1.51360 0.92661 1.19075 0.93836 0.90251 0.97934 1.22355 0.97201 0.87977 0.99298 1.60564 1.19371 1.01568 1.51051 1.18512 0.95027 0.89305 0.87302 0.90533 1.22826 0.99310 0.91193 0.90269 1.70138 1.17890 1.20613 1.12727 1.22235 1.05217 0.99746 0.91212 1.22760 1.04738 0.98887 0.93359 1.43269 1.40041 1.24691 1.06488 0.73010 1.19669 0.94198 0.96885 0.97935 1.20950 0.94067 0.95702 0.97716 1.21124 1.01031 0.95980 0.99423 1.17757 0.91761 0.85828 0.97028 1.91481 1.83142 1.53166 1.84483 1.21055 0.93375 0.99817 1.03266 1.20867 0.99803 0.92872 0.94868 0.92919 0.95727 0.96427 0.95517 0.92461 0.82526 0.81773 0.81012 0.84221 0.84834 0.84828 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -13.97 9.11 -34.44 -0.31 -14.29 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.62 5.23 -27.88 -0.15 0.48 16 10 C 0.06 1.09 5.13 -3.82 -0.02 1.07 16 11 N -0.69 -10.35 5.14 -109.19 -0.56 -10.91 16 12 C 0.21 2.93 2.76 -70.02 -0.19 2.74 16 13 H 0.08 1.07 7.66 -51.93 -0.40 0.68 16 14 C 0.23 3.45 6.98 -155.42 -1.08 2.37 16 15 N -0.49 -7.74 11.20 -10.81 -0.12 -7.86 16 16 C -0.04 -0.47 11.87 -17.81 -0.21 -0.69 16 17 C -0.06 -0.77 12.04 -16.56 -0.20 -0.97 16 18 N -0.54 -7.61 5.61 -10.23 -0.06 -7.66 16 19 H 0.43 5.99 7.87 -40.82 -0.32 5.67 16 20 C -0.09 -1.09 4.67 -104.62 -0.49 -1.58 16 21 C -0.07 -0.81 8.99 -39.59 -0.36 -1.17 16 22 C -0.16 -1.83 10.03 -39.51 -0.40 -2.23 16 23 C 0.10 1.16 7.30 -39.42 -0.29 0.87 16 24 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 25 C -0.16 -1.75 10.03 -39.52 -0.40 -2.15 16 26 C -0.07 -0.77 9.67 -39.59 -0.38 -1.15 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.49 8.06 -51.93 -0.42 0.08 16 31 H 0.06 1.06 7.27 -51.93 -0.38 0.68 16 32 H 0.35 5.16 7.98 -39.29 -0.31 4.85 16 33 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.14 1.70 7.71 -52.48 -0.40 1.30 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.13 1.37 8.04 -52.49 -0.42 0.94 16 LS Contribution 331.77 15.07 5.00 5.00 Total: -1.00 -29.91 331.77 -9.29 -39.20 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.73 Total: 8.17 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -4.57 Total: -15.16 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.00 Total: -51.27 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.91 -9.29 -39.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275641261.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.118 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds