Wall clock time and date at job start Tue Mar 31 2020 06:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99961 * 2 1 4 4 H 1.48503 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47137 * 299.99942 * 3 2 1 6 6 H 1.48499 * 109.47467 * 59.99792 * 3 2 1 7 7 C 1.37877 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99812 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99553 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46824 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.47061 * 179.97438 * 10 9 7 12 12 C 1.46890 * 110.99839 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.47735 * 34.99918 * 12 11 10 14 14 C 1.50705 * 109.47263 * 274.99798 * 12 11 10 15 15 N 1.30498 * 125.64944 * 185.02382 * 14 12 11 16 16 C 1.34129 * 109.25189 * 179.97438 * 15 14 12 17 17 C 1.34665 * 108.02445 * 359.97438 * 16 15 14 18 18 N 1.35038 * 125.64714 * 5.00200 * 14 12 11 19 19 H 0.97000 * 126.40248 * 0.02562 * 18 14 12 20 20 C 1.50702 * 109.47113 * 154.99976 * 12 11 10 21 21 C 1.38243 * 119.97240 * 39.72408 * 20 12 11 22 22 C 1.38198 * 120.02665 * 179.76714 * 21 20 12 23 23 C 1.38468 * 119.97235 * 0.51162 * 22 21 20 24 24 F 1.35098 * 120.02604 * 179.77097 * 23 22 21 25 25 C 1.38456 * 119.94633 * 359.74113 * 23 22 21 26 26 C 1.38200 * 119.97578 * 359.97438 * 25 23 22 27 27 H 0.97003 * 119.99524 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47674 * 59.99608 * 9 7 2 29 29 H 1.09005 * 109.46861 * 299.99376 * 9 7 2 30 30 H 1.08997 * 109.47389 * 59.99343 * 10 9 7 31 31 H 1.08996 * 109.46629 * 299.99522 * 10 9 7 32 32 H 1.00904 * 110.99821 * 303.95444 * 11 10 9 33 33 H 1.08008 * 125.98816 * 180.02562 * 16 15 14 34 34 H 1.07999 * 126.59397 * 180.25953 * 17 16 15 35 35 H 1.08003 * 119.99067 * 0.02562 * 21 20 12 36 36 H 1.07997 * 120.01770 * 180.25178 * 22 21 20 37 37 H 1.08003 * 120.01117 * 179.97438 * 25 23 22 38 38 H 1.07999 * 119.98781 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5108 -4.9343 0.0024 12 6 2.4352 -6.0758 0.0031 13 1 3.3180 -5.8282 0.5924 14 6 2.8476 -6.3890 -1.4122 15 7 3.5868 -7.3984 -1.7833 16 6 3.7489 -7.3622 -3.1142 17 6 3.0845 -6.2900 -3.5859 18 7 2.5132 -5.6719 -2.5064 19 1 1.9692 -4.8689 -2.5243 20 6 1.7506 -7.2763 0.6041 21 6 0.4228 -7.5305 0.3155 22 6 -0.2048 -8.6338 0.8622 23 6 0.4940 -9.4787 1.7079 24 9 -0.1198 -10.5549 2.2466 25 6 1.8223 -9.2201 2.0004 26 6 2.4494 -8.1195 1.4477 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5566 0.8904 30 1 2.8713 -3.6039 0.8922 31 1 2.8725 -3.6047 -0.8877 32 1 0.8740 -4.9837 0.7836 33 1 4.3127 -8.0696 -3.7044 34 1 3.0130 -5.9797 -4.6178 35 1 -0.1233 -6.8691 -0.3408 36 1 -1.2410 -8.8345 0.6334 37 1 2.3683 -9.8782 2.6601 38 1 3.4857 -7.9178 1.6754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275641261.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:34 Heat of formation + Delta-G solvation = 13.771041 kcal Electronic energy + Delta-G solvation = -21993.123884 eV Core-core repulsion = 18556.709005 eV Total energy + Delta-G solvation = -3436.414879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.89224 -42.92387 -40.26664 -37.63951 -35.25240 -33.42222 -32.93066 -32.09682 -30.42372 -30.07172 -26.90238 -25.29178 -23.98229 -22.99327 -22.39006 -22.19902 -21.08795 -18.93996 -18.64981 -18.39363 -17.38379 -17.24353 -16.58679 -16.44878 -16.24168 -15.70501 -15.46755 -15.19832 -14.85306 -14.65087 -14.43719 -14.29489 -14.23751 -14.13505 -13.80120 -13.18304 -13.05683 -12.89940 -12.68678 -12.39077 -12.07336 -11.91168 -11.44640 -11.27728 -10.96640 -10.88027 -10.57032 -10.03760 -9.66524 -9.60288 -9.21982 -8.21031 -6.31177 0.09838 0.30626 1.24593 1.39705 1.41690 1.53108 2.21867 2.33813 2.39912 2.67756 2.92845 3.13813 3.28226 3.56040 3.78548 3.91464 3.98449 4.21483 4.32481 4.37650 4.44726 4.50532 4.58939 4.61282 4.79214 4.97300 5.00429 5.02287 5.16286 5.24129 5.31087 5.40518 5.52008 5.65893 5.73579 5.88864 5.90979 6.02483 6.18628 6.36818 6.54624 6.86109 7.22277 7.38450 8.90544 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.003929 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.937473 B = 7124.577078 C = 8336.523475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.959 3.041 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.034 3.966 10 C 0.082 3.918 11 N -0.684 5.684 12 C 0.218 3.782 13 H 0.077 0.923 14 C 0.211 3.789 15 N -0.514 5.514 16 C -0.054 4.054 17 C -0.054 4.054 18 N -0.548 5.548 19 H 0.428 0.572 20 C -0.093 4.093 21 C -0.073 4.073 22 C -0.158 4.158 23 C 0.084 3.916 24 F -0.147 7.147 25 C -0.153 4.153 26 C -0.069 4.069 27 H 0.263 0.737 28 H 0.003 0.997 29 H -0.004 1.004 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.357 0.643 33 H 0.188 0.812 34 H 0.205 0.795 35 H 0.137 0.863 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 -16.784 -1.467 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.047 4.047 11 N -0.317 5.317 12 C 0.106 3.894 13 H 0.095 0.905 14 C -0.054 4.054 15 N -0.235 5.235 16 C -0.202 4.202 17 C -0.190 4.190 18 N -0.150 5.150 19 H 0.268 0.732 20 C -0.095 4.095 21 C -0.092 4.092 22 C -0.177 4.177 23 C 0.065 3.935 24 F -0.126 7.126 25 C -0.171 4.171 26 C -0.088 4.088 27 H 0.072 0.928 28 H 0.022 0.978 29 H 0.014 0.986 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.178 0.822 33 H 0.205 0.795 34 H 0.222 0.778 35 H 0.155 0.845 36 H 0.166 0.834 37 H 0.173 0.827 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.938 -17.323 -1.616 17.839 hybrid contribution -0.266 1.817 0.281 1.858 sum 3.673 -15.506 -1.335 15.991 Atomic orbital electron populations 1.70087 1.07588 1.27633 1.51465 1.25840 0.95643 1.02949 0.94770 0.85495 0.79110 0.79310 0.77701 1.18804 1.20514 1.20591 1.21602 0.93438 0.92276 1.50728 0.92402 1.18898 0.94110 0.91569 0.95748 1.21920 0.95721 0.87775 0.99280 1.60408 1.19279 1.00731 1.51292 1.18437 0.94664 0.89031 0.87292 0.90547 1.22944 1.00057 0.91668 0.90753 1.70103 1.18359 1.21019 1.14040 1.22735 1.05909 1.00779 0.90771 1.23341 1.03206 0.98056 0.94349 1.43369 1.40121 1.24644 1.06877 0.73201 1.19650 0.94445 0.96852 0.98544 1.20955 0.94079 0.96077 0.98068 1.21284 1.01789 0.95563 0.99053 1.17935 0.92274 0.85921 0.97356 1.91474 1.83252 1.53297 1.84550 1.21293 0.93127 0.99719 1.02977 1.21042 1.00471 0.92761 0.94498 0.92808 0.97839 0.98599 0.95553 0.92386 0.82186 0.79525 0.77772 0.84500 0.83400 0.82659 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.88 13.29 21.45 0.28 -53.60 16 2 C 0.01 0.35 5.46 84.65 0.46 0.82 16 3 Si 0.96 42.55 29.54 68.60 2.03 44.57 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.54 -28.92 9.11 25.60 0.23 -28.69 16 8 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.03 1.64 5.23 29.85 0.16 1.80 16 10 C 0.08 2.99 5.13 86.30 0.44 3.43 16 11 N -0.68 -20.38 5.14 -499.37 -2.57 -22.95 16 12 C 0.22 5.93 2.76 43.43 0.12 6.04 16 13 H 0.08 2.09 7.66 -2.39 -0.02 2.07 16 14 C 0.21 6.17 6.98 138.13 0.96 7.13 16 15 N -0.51 -15.56 11.20 -188.13 -2.11 -17.66 16 16 C -0.05 -1.37 11.87 83.52 0.99 -0.37 16 17 C -0.05 -1.25 12.04 83.08 1.00 -0.25 16 18 N -0.55 -14.82 5.61 -186.27 -1.05 -15.87 16 19 H 0.43 11.70 7.87 -92.71 -0.73 10.97 16 20 C -0.09 -2.32 4.67 -19.86 -0.09 -2.41 16 21 C -0.07 -1.77 8.99 22.26 0.20 -1.57 16 22 C -0.16 -3.56 10.03 22.31 0.22 -3.33 16 23 C 0.08 1.93 7.30 22.38 0.16 2.10 16 24 F -0.15 -3.47 17.27 44.97 0.78 -2.70 16 25 C -0.15 -3.17 10.03 22.31 0.22 -2.94 16 26 C -0.07 -1.53 9.67 22.26 0.22 -1.31 16 27 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 30 H 0.03 0.97 8.06 -2.39 -0.02 0.95 16 31 H 0.06 2.12 7.27 -2.39 -0.02 2.11 16 32 H 0.36 10.44 7.98 -89.69 -0.72 9.72 16 33 H 0.19 3.62 8.06 -2.91 -0.02 3.59 16 34 H 0.21 3.13 8.06 -2.91 -0.02 3.10 16 35 H 0.14 3.32 7.71 -2.91 -0.02 3.30 16 36 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 37 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.15 2.77 8.04 -2.91 -0.02 2.75 16 Total: -1.00 -63.28 331.77 2.32 -60.97 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.35 Total: 26.81 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 5.30 Total: -19.57 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -5.44 Total: -110.08 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -63.28 2.32 -60.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275641261.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.737 kcal (2) G-P(sol) polarization free energy of solvation -63.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds