Wall clock time and date at job start Tue Mar 31 2020 06:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99720 * 2 1 4 4 H 1.48502 * 109.46834 * 270.00221 * 3 2 1 5 5 H 1.48505 * 109.47338 * 29.99478 * 3 2 1 6 6 H 1.48492 * 109.47269 * 150.00051 * 3 2 1 7 7 C 1.37876 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99532 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00146 * 180.02562 * 7 2 1 10 10 C 1.52991 * 109.47078 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47206 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00364 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99845 * 5.13009 * 12 11 10 14 14 C 1.50700 * 120.00366 * 185.12282 * 12 11 10 15 15 H 1.08998 * 109.24838 * 24.13090 * 14 12 11 16 16 C 1.52733 * 109.25390 * 143.59585 * 14 12 11 17 17 C 1.53321 * 108.38724 * 171.39317 * 16 14 12 18 18 C 1.52729 * 108.38896 * 290.18767 * 17 16 14 19 19 C 1.50626 * 110.59820 * 51.07108 * 18 17 16 20 20 C 1.39397 * 117.75994 * 162.35087 * 19 18 17 21 21 O 1.35909 * 119.78574 * 359.65629 * 20 19 18 22 22 C 1.38431 * 120.42722 * 179.64042 * 20 19 18 23 23 C 1.38174 * 119.71115 * 359.93428 * 22 20 19 24 24 C 1.37956 * 119.82859 * 0.13879 * 23 22 20 25 25 C 1.37570 * 122.59185 * 342.43991 * 19 18 17 26 26 H 0.97006 * 120.00345 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47043 * 59.99468 * 9 7 2 28 28 H 1.09001 * 109.47092 * 300.00098 * 9 7 2 29 29 H 1.09005 * 109.47480 * 60.00017 * 10 9 7 30 30 H 1.08999 * 109.47552 * 299.99702 * 10 9 7 31 31 H 0.97006 * 120.00028 * 0.02562 * 11 10 9 32 32 H 1.09001 * 109.67641 * 51.67245 * 16 14 12 33 33 H 1.08994 * 109.68255 * 291.12345 * 16 14 12 34 34 H 1.08995 * 109.68170 * 170.46387 * 17 16 14 35 35 H 1.08999 * 109.70859 * 49.92783 * 17 16 14 36 36 H 1.09008 * 109.24875 * 290.78607 * 18 17 16 37 37 H 1.08995 * 109.22401 * 171.34190 * 18 17 16 38 38 H 0.96690 * 114.00160 * 269.98330 * 21 20 19 39 39 H 1.08006 * 120.14574 * 179.91630 * 22 20 19 40 40 H 1.08000 * 120.08254 * 180.16316 * 23 22 20 41 41 H 1.08001 * 119.66385 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6363 0.0010 11 7 5.4866 -2.6363 0.0009 12 6 6.1606 -3.8034 0.0014 13 8 5.5579 -4.8517 -0.0922 14 6 7.6631 -3.8060 0.1178 15 1 7.9872 -2.8870 0.6062 16 6 8.1011 -5.0041 0.9577 17 6 9.6287 -5.1132 0.8849 18 6 10.0137 -5.5508 -0.5269 19 6 9.3516 -4.6699 -1.5538 20 6 9.8710 -4.6773 -2.8473 21 8 10.9441 -5.4585 -3.1395 22 6 9.3006 -3.8945 -3.8363 23 6 8.2086 -3.1022 -3.5380 24 6 7.6961 -3.0942 -2.2572 25 6 8.2708 -3.8714 -1.2589 26 1 -0.4851 0.8401 0.0004 27 1 3.8745 -0.6798 0.8911 28 1 3.8752 -0.6803 -0.8888 29 1 3.6587 -3.1500 -0.8893 30 1 3.6580 -3.1504 0.8907 31 1 5.9716 -1.7962 0.0014 32 1 7.6489 -5.9139 0.5631 33 1 7.7923 -4.8593 1.9929 34 1 9.9788 -5.8514 1.6063 35 1 10.0773 -4.1443 1.1040 36 1 9.6985 -6.5827 -0.6817 37 1 11.0957 -5.4846 -0.6406 38 1 11.7963 -5.0202 -3.0107 39 1 9.7075 -3.9027 -4.8368 40 1 7.7572 -2.4911 -4.3056 41 1 6.8422 -2.4743 -2.0270 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276874234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:55 Heat of formation + Delta-G solvation = -77.919658 kcal Electronic energy + Delta-G solvation = -22667.921650 eV Core-core repulsion = 19318.698318 eV Total energy + Delta-G solvation = -3349.223332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92863 -39.24497 -37.22138 -35.97478 -34.96600 -32.90166 -32.06468 -30.51556 -30.01820 -28.65261 -25.47622 -23.96615 -23.02897 -22.43634 -20.83060 -20.35604 -19.53974 -18.33088 -17.07617 -16.82221 -16.25837 -16.16135 -15.49763 -15.29287 -15.02134 -14.44637 -14.23701 -14.06319 -13.71147 -13.50718 -13.17119 -12.96029 -12.70231 -12.62401 -12.44510 -11.97504 -11.72747 -11.51008 -11.44289 -11.22612 -11.12627 -10.87289 -10.42574 -10.33204 -10.30301 -9.98823 -9.56797 -9.33218 -8.74855 -8.68538 -8.66252 -8.55871 -6.12864 -4.13178 1.04466 1.12604 2.85172 3.23266 3.30917 3.32017 3.34056 3.59123 3.99225 4.35657 4.37394 4.45294 4.72058 4.73604 4.85722 4.94549 5.08449 5.18631 5.19915 5.20393 5.30079 5.39671 5.61230 5.64755 5.68176 5.77511 5.80731 5.97788 6.08925 6.17569 6.19360 6.22321 6.30638 6.38656 6.53273 6.62052 6.71595 7.10498 7.20459 7.41235 7.64415 7.84871 8.41245 8.52140 8.91583 9.47084 11.00193 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.003584 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.169194 B = 7811.394631 C = 8442.864635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.129 3.871 11 N -0.727 5.727 12 C 0.515 3.485 13 O -0.537 6.537 14 C -0.067 4.067 15 H 0.100 0.900 16 C -0.107 4.107 17 C -0.118 4.118 18 C -0.073 4.073 19 C -0.092 4.092 20 C 0.098 3.902 21 O -0.496 6.496 22 C -0.144 4.144 23 C -0.103 4.103 24 C -0.124 4.124 25 C -0.049 4.049 26 H 0.265 0.735 27 H 0.022 0.978 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.396 0.604 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.385 0.615 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.446 -5.962 -2.322 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.007 3.993 11 N -0.378 5.378 12 C 0.300 3.700 13 O -0.414 6.414 14 C -0.088 4.088 15 H 0.118 0.882 16 C -0.144 4.144 17 C -0.156 4.156 18 C -0.110 4.110 19 C -0.093 4.093 20 C 0.054 3.946 21 O -0.305 6.305 22 C -0.162 4.162 23 C -0.121 4.121 24 C -0.142 4.142 25 C -0.050 4.050 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.229 0.771 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.241 0.759 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 24.377 -7.026 -2.501 25.492 hybrid contribution 0.804 1.812 -0.076 1.984 sum 25.182 -5.215 -2.577 25.845 Atomic orbital electron populations 1.69903 1.06300 1.27069 1.50366 1.25003 0.94760 0.99142 0.94365 0.86756 0.80262 0.83566 0.78510 1.20216 1.21251 1.19085 1.20917 0.88653 0.94899 1.51701 0.90629 1.19789 0.98024 0.91307 0.96806 1.21527 0.75971 1.00154 1.01676 1.46466 1.09247 1.07744 1.74312 1.20286 0.88873 0.84249 0.76577 1.90688 1.70038 1.31556 1.49109 1.20242 0.92539 1.01772 0.94269 0.88204 1.21469 0.95555 0.97893 0.99520 1.21572 0.95740 1.01924 0.96339 1.20330 0.99568 0.98615 0.92508 1.19827 0.97168 0.98168 0.94098 1.18390 0.91129 0.93442 0.91656 1.84844 1.15493 1.40534 1.89662 1.21349 0.98342 0.97039 0.99504 1.20954 0.95829 0.98730 0.96611 1.21389 1.00084 0.99591 0.93160 1.19058 0.94934 0.96682 0.94326 0.92529 0.95991 0.96469 0.91896 0.91941 0.77077 0.89868 0.90872 0.90877 0.91536 0.90219 0.90864 0.75912 0.85432 0.85310 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.52 -14.56 9.66 -34.44 -0.33 -14.90 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.02 -0.48 4.16 -27.89 -0.12 -0.60 16 10 C 0.13 2.60 5.62 -4.05 -0.02 2.57 16 11 N -0.73 -11.66 4.75 -60.30 -0.29 -11.95 16 12 C 0.52 8.34 5.72 -10.99 -0.06 8.28 16 13 O -0.54 -10.93 16.13 5.56 0.09 -10.84 16 14 C -0.07 -0.81 2.56 -93.09 -0.24 -1.05 16 15 H 0.10 0.98 8.12 -51.93 -0.42 0.56 16 16 C -0.11 -1.18 5.07 -26.70 -0.14 -1.32 16 17 C -0.12 -0.99 5.98 -26.70 -0.16 -1.15 16 18 C -0.07 -0.67 5.28 -28.06 -0.15 -0.82 16 19 C -0.09 -1.04 5.75 -104.47 -0.60 -1.64 16 20 C 0.10 1.06 6.66 -39.08 -0.26 0.80 16 21 O -0.50 -4.47 12.53 -19.45 -0.24 -4.72 16 22 C -0.14 -1.52 9.98 -39.53 -0.39 -1.91 16 23 C -0.10 -1.16 10.04 -39.71 -0.40 -1.55 16 24 C -0.12 -1.56 9.04 -39.42 -0.36 -1.92 16 25 C -0.05 -0.61 5.43 -104.63 -0.57 -1.18 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 28 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.40 5.22 8.35 -40.82 -0.34 4.88 16 32 H 0.08 1.10 7.51 -51.93 -0.39 0.71 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.07 0.53 7.75 -51.93 -0.40 0.13 16 38 H 0.39 1.58 9.06 45.56 0.41 2.00 16 39 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.13 1.63 6.52 -52.49 -0.34 1.29 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -33.97 335.31 -8.39 -42.36 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.22 Total: 4.92 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -3.89 Total: -14.53 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.49 Total: -38.42 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.15 Total: -15.56 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.97 -8.39 -42.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276874234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.562 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds