Wall clock time and date at job start Tue Mar 31 2020 06:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99720 * 2 1 4 4 H 1.48502 * 109.46834 * 270.00221 * 3 2 1 5 5 H 1.48505 * 109.47338 * 29.99478 * 3 2 1 6 6 H 1.48492 * 109.47269 * 150.00051 * 3 2 1 7 7 C 1.37876 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99532 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00146 * 180.02562 * 7 2 1 10 10 C 1.52991 * 109.47078 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47206 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00364 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99845 * 5.13009 * 12 11 10 14 14 C 1.50700 * 120.00366 * 185.12282 * 12 11 10 15 15 H 1.08998 * 109.24838 * 24.13090 * 14 12 11 16 16 C 1.52733 * 109.25390 * 143.59585 * 14 12 11 17 17 C 1.53321 * 108.38724 * 171.39317 * 16 14 12 18 18 C 1.52729 * 108.38896 * 290.18767 * 17 16 14 19 19 C 1.50626 * 110.59820 * 51.07108 * 18 17 16 20 20 C 1.39397 * 117.75994 * 162.35087 * 19 18 17 21 21 O 1.35909 * 119.78574 * 359.65629 * 20 19 18 22 22 C 1.38431 * 120.42722 * 179.64042 * 20 19 18 23 23 C 1.38174 * 119.71115 * 359.93428 * 22 20 19 24 24 C 1.37956 * 119.82859 * 0.13879 * 23 22 20 25 25 C 1.37570 * 122.59185 * 342.43991 * 19 18 17 26 26 H 0.97006 * 120.00345 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47043 * 59.99468 * 9 7 2 28 28 H 1.09001 * 109.47092 * 300.00098 * 9 7 2 29 29 H 1.09005 * 109.47480 * 60.00017 * 10 9 7 30 30 H 1.08999 * 109.47552 * 299.99702 * 10 9 7 31 31 H 0.97006 * 120.00028 * 0.02562 * 11 10 9 32 32 H 1.09001 * 109.67641 * 51.67245 * 16 14 12 33 33 H 1.08994 * 109.68255 * 291.12345 * 16 14 12 34 34 H 1.08995 * 109.68170 * 170.46387 * 17 16 14 35 35 H 1.08999 * 109.70859 * 49.92783 * 17 16 14 36 36 H 1.09008 * 109.24875 * 290.78607 * 18 17 16 37 37 H 1.08995 * 109.22401 * 171.34190 * 18 17 16 38 38 H 0.96690 * 114.00160 * 269.98330 * 21 20 19 39 39 H 1.08006 * 120.14574 * 179.91630 * 22 20 19 40 40 H 1.08000 * 120.08254 * 180.16316 * 23 22 20 41 41 H 1.08001 * 119.66385 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6363 0.0010 11 7 5.4866 -2.6363 0.0009 12 6 6.1606 -3.8034 0.0014 13 8 5.5579 -4.8517 -0.0922 14 6 7.6631 -3.8060 0.1178 15 1 7.9872 -2.8870 0.6062 16 6 8.1011 -5.0041 0.9577 17 6 9.6287 -5.1132 0.8849 18 6 10.0137 -5.5508 -0.5269 19 6 9.3516 -4.6699 -1.5538 20 6 9.8710 -4.6773 -2.8473 21 8 10.9441 -5.4585 -3.1395 22 6 9.3006 -3.8945 -3.8363 23 6 8.2086 -3.1022 -3.5380 24 6 7.6961 -3.0942 -2.2572 25 6 8.2708 -3.8714 -1.2589 26 1 -0.4851 0.8401 0.0004 27 1 3.8745 -0.6798 0.8911 28 1 3.8752 -0.6803 -0.8888 29 1 3.6587 -3.1500 -0.8893 30 1 3.6580 -3.1504 0.8907 31 1 5.9716 -1.7962 0.0014 32 1 7.6489 -5.9139 0.5631 33 1 7.7923 -4.8593 1.9929 34 1 9.9788 -5.8514 1.6063 35 1 10.0773 -4.1443 1.1040 36 1 9.6985 -6.5827 -0.6817 37 1 11.0957 -5.4846 -0.6406 38 1 11.7963 -5.0202 -3.0107 39 1 9.7075 -3.9027 -4.8368 40 1 7.7572 -2.4911 -4.3056 41 1 6.8422 -2.4743 -2.0270 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276874234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:54 Heat of formation + Delta-G solvation = -101.954428 kcal Electronic energy + Delta-G solvation = -22668.963876 eV Core-core repulsion = 19318.698318 eV Total energy + Delta-G solvation = -3350.265558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.88152 -40.38136 -38.07619 -36.89698 -36.46735 -34.83009 -33.16350 -31.73909 -31.29081 -29.49853 -27.12261 -25.09283 -23.82879 -23.42016 -22.58582 -21.57410 -20.38555 -19.15919 -19.02012 -18.12353 -17.18789 -17.07944 -16.60104 -16.44535 -16.24126 -16.04014 -15.59031 -15.09618 -14.86040 -14.61596 -14.57571 -14.25894 -13.80752 -13.61698 -13.37332 -13.26051 -13.05013 -12.77798 -12.59141 -12.27213 -12.18186 -12.15112 -11.84803 -11.76719 -11.68905 -11.52636 -11.09144 -10.86795 -10.79683 -10.08875 -9.62171 -9.49780 -8.30780 -6.38403 0.21117 0.29617 1.38704 1.41436 1.52679 1.56648 2.19149 2.36296 2.63498 3.04333 3.25144 3.49925 3.64031 3.82669 3.91630 4.05733 4.13148 4.21256 4.31777 4.39640 4.40696 4.42524 4.49194 4.64208 4.73102 4.87953 4.91179 4.96288 4.96542 5.10822 5.13055 5.23070 5.37766 5.39447 5.40966 5.43317 5.48998 5.54469 5.63018 5.86183 6.21075 6.55786 6.69978 6.87187 7.22697 7.26428 8.86147 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.003584 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.169194 B = 7811.394631 C = 8442.864635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.235 1.235 7 C -0.540 4.540 8 H 0.027 0.973 9 C -0.012 4.012 10 C 0.144 3.856 11 N -0.715 5.715 12 C 0.515 3.485 13 O -0.585 6.585 14 C -0.057 4.057 15 H 0.131 0.869 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.073 4.073 19 C -0.103 4.103 20 C 0.099 3.901 21 O -0.501 6.501 22 C -0.149 4.149 23 C -0.110 4.110 24 C -0.146 4.146 25 C -0.063 4.063 26 H 0.268 0.732 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.414 0.586 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.409 0.591 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.395 -4.453 -2.248 29.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.158 1.158 7 C -0.579 4.579 8 H 0.045 0.955 9 C -0.049 4.049 10 C 0.020 3.980 11 N -0.367 5.367 12 C 0.303 3.697 13 O -0.465 6.465 14 C -0.078 4.078 15 H 0.148 0.852 16 C -0.146 4.146 17 C -0.146 4.146 18 C -0.110 4.110 19 C -0.103 4.103 20 C 0.055 3.945 21 O -0.315 6.315 22 C -0.167 4.167 23 C -0.127 4.127 24 C -0.164 4.164 25 C -0.064 4.064 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.251 0.749 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.268 0.732 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 28.390 -5.508 -2.424 29.020 hybrid contribution -0.459 1.205 -0.157 1.299 sum 27.931 -4.304 -2.581 28.378 Atomic orbital electron populations 1.70080 1.08641 1.28462 1.51950 1.26097 0.95687 1.03920 0.93623 0.85535 0.79729 0.77239 0.79356 1.18999 1.21254 1.15773 1.21258 0.91662 0.93317 1.51635 0.95487 1.19642 0.94358 0.92777 0.98147 1.21031 0.78615 0.98502 0.99827 1.46211 1.07363 1.08981 1.74104 1.21070 0.90672 0.83158 0.74830 1.90668 1.71460 1.33257 1.51099 1.20262 0.88732 1.03739 0.95080 0.85180 1.21495 0.97691 0.96068 0.99356 1.21555 0.93293 1.03446 0.96332 1.20391 1.00809 0.97422 0.92386 1.20091 0.97076 0.98101 0.95070 1.18494 0.91590 0.92975 0.91482 1.84788 1.16340 1.40780 1.89552 1.21605 0.98034 0.96639 1.00433 1.21171 0.96055 0.99040 0.96484 1.21468 1.00456 1.00420 0.94097 1.19125 0.95630 0.97448 0.94200 0.92313 0.94259 0.94629 0.94183 0.93719 0.74936 0.92743 0.90216 0.89086 0.89806 0.91367 0.88454 0.73226 0.83576 0.83947 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.96 41.98 27.47 68.60 1.88 43.86 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.23 -9.04 6.54 99.48 0.65 -8.39 16 7 C -0.54 -30.91 9.66 25.60 0.25 -30.66 16 8 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 9 C -0.01 -0.51 4.16 29.84 0.12 -0.38 16 10 C 0.14 5.91 5.62 86.38 0.49 6.39 16 11 N -0.71 -22.34 4.75 -463.07 -2.20 -24.54 16 12 C 0.52 16.58 5.72 87.66 0.50 17.09 16 13 O -0.59 -24.59 16.13 -3.03 -0.05 -24.64 16 14 C -0.06 -1.30 2.56 -12.39 -0.03 -1.33 16 15 H 0.13 2.14 8.12 -2.39 -0.02 2.12 16 16 C -0.11 -2.25 5.07 30.61 0.16 -2.10 16 17 C -0.11 -1.51 5.98 30.61 0.18 -1.33 16 18 C -0.07 -1.16 5.28 29.73 0.16 -1.00 16 19 C -0.10 -2.13 5.75 -19.77 -0.11 -2.24 16 20 C 0.10 1.93 6.66 22.60 0.15 2.08 16 21 O -0.50 -7.63 12.53 -92.53 -1.16 -8.79 16 22 C -0.15 -2.84 9.98 22.30 0.22 -2.62 16 23 C -0.11 -2.30 10.04 22.19 0.22 -2.08 16 24 C -0.15 -3.53 9.04 22.37 0.20 -3.33 16 25 C -0.06 -1.48 5.43 -19.87 -0.11 -1.59 16 26 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 27 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16 28 H 0.04 1.45 7.57 -2.39 -0.02 1.44 16 29 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.04 1.97 8.14 -2.39 -0.02 1.96 16 31 H 0.41 9.95 8.35 -92.70 -0.77 9.18 16 32 H 0.05 1.45 7.51 -2.39 -0.02 1.43 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16 36 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.10 1.06 7.75 -2.39 -0.02 1.04 16 38 H 0.41 1.96 9.06 -74.06 -0.67 1.29 16 39 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 40 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.12 2.98 6.52 -2.91 -0.02 2.96 16 Total: -1.00 -77.02 335.31 1.19 -75.83 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.45 Total: 19.85 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 2.86 Total: -22.42 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -1.90 Total: -83.69 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -1.21 Total: -33.43 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.88 Total: 43.86 kcal Total: -77.02 1.19 -75.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276874234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.121 kcal (2) G-P(sol) polarization free energy of solvation -77.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds