Wall clock time and date at job start Tue Mar 31 2020 06:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99833 * 2 1 4 4 H 1.48492 * 109.47080 * 240.00191 * 3 2 1 5 5 H 1.48500 * 109.47269 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46672 * 120.00072 * 3 2 1 7 7 C 1.37873 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47102 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47253 * 179.97438 * 10 9 7 12 12 C 1.46897 * 110.99692 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46792 * 179.97438 * 12 11 10 14 14 C 1.35332 * 126.14193 * 94.28297 * 13 12 11 15 15 C 1.39908 * 107.93125 * 180.24152 * 14 13 12 16 16 N 1.30893 * 108.23865 * 359.55245 * 15 14 13 17 17 N 1.35208 * 126.14444 * 274.25624 * 13 12 11 18 18 C 1.40250 * 126.05160 * 359.97438 * 17 13 12 19 19 C 1.38825 * 120.04311 * 222.82808 * 18 17 13 20 20 C 1.38099 * 119.95827 * 179.72167 * 19 18 17 21 21 C 1.38495 * 120.04201 * 0.55551 * 20 19 18 22 22 F 1.35096 * 119.96018 * 179.74684 * 21 20 19 23 23 C 1.38482 * 120.07879 * 359.72149 * 21 20 19 24 24 C 1.38108 * 120.04192 * 359.97438 * 23 21 20 25 25 H 0.97004 * 120.00135 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47291 * 59.99491 * 9 7 2 27 27 H 1.09001 * 109.46888 * 299.99287 * 9 7 2 28 28 H 1.09001 * 109.47094 * 59.99311 * 10 9 7 29 29 H 1.09007 * 109.47079 * 300.00153 * 10 9 7 30 30 H 1.00891 * 110.99768 * 56.04455 * 11 10 9 31 31 H 1.09002 * 109.47460 * 60.00367 * 12 11 10 32 32 H 1.09000 * 109.47752 * 300.00038 * 12 11 10 33 33 H 1.07999 * 126.03236 * 359.97438 * 14 13 12 34 34 H 1.08000 * 125.88122 * 179.73182 * 15 14 13 35 35 H 1.07997 * 120.02204 * 359.97438 * 19 18 17 36 36 H 1.08002 * 119.98671 * 180.25032 * 20 19 18 37 37 H 1.07995 * 119.98162 * 179.97438 * 23 21 20 38 38 H 1.07998 * 120.01964 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 7 1.5107 -4.9343 -0.0033 12 6 2.4353 -6.0758 -0.0049 13 6 1.6472 -7.3604 -0.0047 14 6 1.2982 -8.0828 -1.0946 15 6 0.5711 -9.1959 -0.6588 16 7 0.4943 -9.1494 0.6470 17 7 1.1623 -7.9984 1.0843 18 6 1.3039 -7.5820 2.4160 19 6 1.6127 -8.5068 3.4043 20 6 1.7574 -8.0940 4.7142 21 6 1.5834 -6.7602 5.0440 22 9 1.7203 -6.3590 6.3268 23 6 1.2697 -5.8372 4.0605 24 6 1.1303 -6.2453 2.7484 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5562 -0.8919 27 1 0.6241 -2.5575 0.8881 28 1 2.8720 -3.6050 0.8872 29 1 2.8719 -3.6035 -0.8927 30 1 0.8741 -4.9838 -0.7844 31 1 3.0639 -6.0356 0.8847 32 1 3.0626 -6.0341 -0.8952 33 1 1.5351 -7.8404 -2.1200 34 1 0.1487 -9.9630 -1.2908 35 1 1.7437 -9.5478 3.1483 36 1 2.0016 -8.8124 5.4827 37 1 1.1339 -4.7976 4.3195 38 1 0.8861 -5.5251 1.9816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279776296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:16 Heat of formation + Delta-G solvation = 58.310371 kcal Electronic energy + Delta-G solvation = -21928.718761 eV Core-core repulsion = 18494.235252 eV Total energy + Delta-G solvation = -3434.483509 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.99119 -41.61222 -38.87522 -36.29190 -33.42550 -33.06327 -31.47433 -31.04332 -28.93501 -28.60393 -25.56706 -23.53456 -23.39296 -23.05229 -20.96877 -20.76174 -19.96510 -17.82752 -17.48285 -16.54221 -16.36401 -15.71066 -15.40148 -15.15318 -14.98245 -14.52338 -14.20548 -13.94092 -13.82042 -13.70669 -13.48964 -13.09011 -12.89344 -12.55036 -12.41961 -12.18501 -11.73296 -11.21250 -11.15884 -10.97558 -10.76640 -10.62201 -10.12183 -9.93927 -9.54787 -9.29616 -9.27237 -8.94184 -8.41863 -8.23165 -8.09956 -6.05713 -4.09084 0.68523 1.06599 1.87591 2.36246 2.73349 3.29789 3.34914 3.36602 3.38969 4.11660 4.34476 4.46005 4.53429 4.69766 4.72948 4.81385 5.02626 5.11569 5.25129 5.30583 5.45982 5.54350 5.59607 5.71007 5.78747 5.92150 6.02091 6.13494 6.15939 6.22348 6.29260 6.53792 6.63234 6.82596 7.11540 7.21804 7.57074 7.61918 7.65659 7.78701 7.97269 8.34205 8.97608 9.55417 11.05436 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.004192 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.729686 B = 6677.180036 C = 8380.651703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.064 3.936 11 N -0.688 5.688 12 C 0.111 3.889 13 C 0.104 3.896 14 C -0.266 4.266 15 C 0.052 3.948 16 N -0.294 5.294 17 N -0.315 5.315 18 C 0.133 3.867 19 C -0.083 4.083 20 C -0.148 4.148 21 C 0.098 3.902 22 F -0.138 7.138 23 C -0.134 4.134 24 C -0.086 4.086 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.022 0.978 30 H 0.345 0.655 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.151 0.849 34 H 0.186 0.814 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 -17.966 3.538 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.063 4.063 11 N -0.320 5.320 12 C -0.020 4.020 13 C -0.022 4.022 14 C -0.296 4.296 15 C -0.134 4.134 16 N -0.113 5.113 17 N -0.091 5.091 18 C 0.042 3.958 19 C -0.103 4.103 20 C -0.167 4.167 21 C 0.079 3.921 22 F -0.116 7.116 23 C -0.154 4.154 24 C -0.106 4.106 25 H 0.071 0.929 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.040 0.960 30 H 0.163 0.837 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.168 0.832 34 H 0.203 0.797 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.004 -18.387 5.391 19.395 hybrid contribution 1.021 1.344 -1.480 2.245 sum 4.025 -17.043 3.910 17.943 Atomic orbital electron populations 1.69954 1.06041 1.26829 1.50268 1.24984 0.94822 0.99218 0.95156 0.86652 0.79585 0.83105 0.78626 1.20263 1.21246 1.20198 1.21095 0.92941 0.90898 1.51407 0.92759 1.19064 0.93922 0.90282 0.97847 1.22247 0.97179 0.87690 0.99224 1.60619 1.19416 1.01787 1.50206 1.20582 0.93337 0.85595 1.02440 1.21246 0.98262 0.96050 0.86643 1.21309 1.10226 0.98916 0.99117 1.23923 0.98521 0.98840 0.92105 1.77483 1.17543 1.03085 1.13226 1.45652 1.41274 1.18557 1.03649 1.17457 1.03838 0.93497 0.81045 1.20818 0.98328 0.99875 0.91246 1.20936 1.04250 0.94515 0.97019 1.17842 1.02056 0.93239 0.78985 1.91508 1.93276 1.91310 1.35539 1.21174 1.01852 1.00675 0.91682 1.21875 0.95903 0.95164 0.97638 0.92855 0.96667 0.95643 0.91993 0.95950 0.83676 0.89901 0.92314 0.83166 0.79683 0.84482 0.84155 0.83388 0.80472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.64 5.23 -27.88 -0.15 0.49 16 10 C 0.06 1.20 5.62 -3.82 -0.02 1.18 16 11 N -0.69 -10.73 4.41 -115.05 -0.51 -11.24 16 12 C 0.11 1.46 5.09 -4.98 -0.03 1.44 16 13 C 0.10 1.39 6.26 -82.14 -0.51 0.87 16 14 C -0.27 -3.17 10.72 -39.99 -0.43 -3.60 16 15 C 0.05 0.61 12.03 -17.33 -0.21 0.40 16 16 N -0.29 -4.18 12.42 30.64 0.38 -3.80 16 17 N -0.31 -4.49 3.70 -6.97 -0.03 -4.52 16 18 C 0.13 1.82 6.09 -83.57 -0.51 1.31 16 19 C -0.08 -0.98 9.85 -39.42 -0.39 -1.37 16 20 C -0.15 -1.60 10.02 -39.54 -0.40 -1.99 16 21 C 0.10 1.20 7.30 -39.40 -0.29 0.92 16 22 F -0.14 -1.74 17.27 2.25 0.04 -1.70 16 23 C -0.13 -1.75 10.02 -39.54 -0.40 -2.14 16 24 C -0.09 -1.20 8.57 -39.41 -0.34 -1.54 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.34 5.36 8.72 -39.30 -0.34 5.02 16 31 H 0.08 1.10 7.51 -51.93 -0.39 0.71 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.19 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.18 2.77 5.37 -52.49 -0.28 2.48 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -30.05 331.97 -8.25 -38.30 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.78 Total: 4.24 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -4.07 Total: -16.97 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.58 Total: -44.95 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.05 -8.25 -38.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279776296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.614 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds