Wall clock time and date at job start Tue Mar 31 2020 06:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99833 * 2 1 4 4 H 1.48492 * 109.47080 * 240.00191 * 3 2 1 5 5 H 1.48500 * 109.47269 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46672 * 120.00072 * 3 2 1 7 7 C 1.37873 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47102 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47253 * 179.97438 * 10 9 7 12 12 C 1.46897 * 110.99692 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46792 * 179.97438 * 12 11 10 14 14 C 1.35332 * 126.14193 * 94.28297 * 13 12 11 15 15 C 1.39908 * 107.93125 * 180.24152 * 14 13 12 16 16 N 1.30893 * 108.23865 * 359.55245 * 15 14 13 17 17 N 1.35208 * 126.14444 * 274.25624 * 13 12 11 18 18 C 1.40250 * 126.05160 * 359.97438 * 17 13 12 19 19 C 1.38825 * 120.04311 * 222.82808 * 18 17 13 20 20 C 1.38099 * 119.95827 * 179.72167 * 19 18 17 21 21 C 1.38495 * 120.04201 * 0.55551 * 20 19 18 22 22 F 1.35096 * 119.96018 * 179.74684 * 21 20 19 23 23 C 1.38482 * 120.07879 * 359.72149 * 21 20 19 24 24 C 1.38108 * 120.04192 * 359.97438 * 23 21 20 25 25 H 0.97004 * 120.00135 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47291 * 59.99491 * 9 7 2 27 27 H 1.09001 * 109.46888 * 299.99287 * 9 7 2 28 28 H 1.09001 * 109.47094 * 59.99311 * 10 9 7 29 29 H 1.09007 * 109.47079 * 300.00153 * 10 9 7 30 30 H 1.00891 * 110.99768 * 56.04455 * 11 10 9 31 31 H 1.09002 * 109.47460 * 60.00367 * 12 11 10 32 32 H 1.09000 * 109.47752 * 300.00038 * 12 11 10 33 33 H 1.07999 * 126.03236 * 359.97438 * 14 13 12 34 34 H 1.08000 * 125.88122 * 179.73182 * 15 14 13 35 35 H 1.07997 * 120.02204 * 359.97438 * 19 18 17 36 36 H 1.08002 * 119.98671 * 180.25032 * 20 19 18 37 37 H 1.07995 * 119.98162 * 179.97438 * 23 21 20 38 38 H 1.07998 * 120.01964 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 7 1.5107 -4.9343 -0.0033 12 6 2.4353 -6.0758 -0.0049 13 6 1.6472 -7.3604 -0.0047 14 6 1.2982 -8.0828 -1.0946 15 6 0.5711 -9.1959 -0.6588 16 7 0.4943 -9.1494 0.6470 17 7 1.1623 -7.9984 1.0843 18 6 1.3039 -7.5820 2.4160 19 6 1.6127 -8.5068 3.4043 20 6 1.7574 -8.0940 4.7142 21 6 1.5834 -6.7602 5.0440 22 9 1.7203 -6.3590 6.3268 23 6 1.2697 -5.8372 4.0605 24 6 1.1303 -6.2453 2.7484 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5562 -0.8919 27 1 0.6241 -2.5575 0.8881 28 1 2.8720 -3.6050 0.8872 29 1 2.8719 -3.6035 -0.8927 30 1 0.8741 -4.9838 -0.7844 31 1 3.0639 -6.0356 0.8847 32 1 3.0626 -6.0341 -0.8952 33 1 1.5351 -7.8404 -2.1200 34 1 0.1487 -9.9630 -1.2908 35 1 1.7437 -9.5478 3.1483 36 1 2.0016 -8.8124 5.4827 37 1 1.1339 -4.7976 4.3195 38 1 0.8861 -5.5251 1.9816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279776296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:15 Heat of formation + Delta-G solvation = 41.628283 kcal Electronic energy + Delta-G solvation = -21929.442150 eV Core-core repulsion = 18494.235252 eV Total energy + Delta-G solvation = -3435.206898 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.97602 -42.58017 -39.83977 -37.66978 -35.15674 -34.24077 -32.75704 -32.16559 -30.45414 -29.57907 -27.08599 -25.05492 -24.35438 -24.11059 -22.48010 -21.89790 -20.97984 -18.83009 -18.57020 -18.42877 -17.48908 -16.73873 -16.65380 -16.45786 -16.20606 -15.94477 -15.21210 -15.19083 -14.93693 -14.76406 -14.52531 -14.32584 -14.11207 -14.01524 -13.63506 -13.39325 -13.26511 -12.82262 -12.66603 -12.46487 -12.18667 -11.96943 -11.69612 -11.41855 -11.30928 -10.90324 -10.53970 -10.25498 -9.99228 -9.39893 -9.18140 -8.18523 -6.29359 -0.30035 0.10316 0.87962 1.40753 1.42421 1.44505 1.52335 1.82585 2.40844 2.42359 3.14707 3.15842 3.28996 3.58909 3.61824 3.77889 3.90085 4.04295 4.14763 4.28775 4.43857 4.55353 4.57833 4.63361 4.67467 4.80164 4.87053 4.97277 5.08142 5.12188 5.16189 5.24902 5.45929 5.59368 5.68194 5.73192 5.77251 6.04999 6.15499 6.22206 6.42009 6.66446 6.88251 7.40165 8.93066 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.004192 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.729686 B = 6677.180036 C = 8380.651703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.032 3.968 10 C 0.086 3.914 11 N -0.689 5.689 12 C 0.119 3.881 13 C 0.085 3.915 14 C -0.262 4.262 15 C 0.057 3.943 16 N -0.322 5.322 17 N -0.327 5.327 18 C 0.121 3.879 19 C -0.081 4.081 20 C -0.131 4.131 21 C 0.092 3.908 22 F -0.140 7.140 23 C -0.142 4.142 24 C -0.100 4.100 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.005 1.005 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.345 0.655 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.173 0.827 34 H 0.222 0.778 35 H 0.150 0.850 36 H 0.172 0.828 37 H 0.146 0.854 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.005 -19.176 3.237 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.005 4.005 10 C -0.042 4.042 11 N -0.321 5.321 12 C -0.011 4.011 13 C -0.040 4.040 14 C -0.291 4.291 15 C -0.129 4.129 16 N -0.141 5.141 17 N -0.104 5.104 18 C 0.030 3.970 19 C -0.101 4.101 20 C -0.150 4.150 21 C 0.073 3.927 22 F -0.119 7.119 23 C -0.161 4.161 24 C -0.120 4.120 25 H 0.071 0.929 26 H 0.010 0.990 27 H 0.014 0.986 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.164 0.836 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.191 0.809 34 H 0.239 0.761 35 H 0.168 0.832 36 H 0.189 0.811 37 H 0.164 0.836 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.365 -19.613 5.088 20.727 hybrid contribution 0.561 1.634 -1.407 2.228 sum 4.926 -17.979 3.681 19.001 Atomic orbital electron populations 1.70095 1.07784 1.27746 1.51517 1.25907 0.95650 1.03174 0.94752 0.85551 0.78282 0.78347 0.79173 1.19114 1.21135 1.19266 1.21580 0.93586 0.92169 1.50736 0.91981 1.18905 0.94285 0.92112 0.95205 1.21806 0.95592 0.87284 0.99563 1.60467 1.19812 1.01399 1.50451 1.20515 0.92860 0.84536 1.03145 1.21374 0.99098 0.96334 0.87203 1.21673 1.09222 0.98446 0.99753 1.24574 0.97441 0.99264 0.91618 1.77449 1.18438 1.03576 1.14661 1.45773 1.41801 1.18903 1.03879 1.17654 1.04112 0.93618 0.81616 1.20985 0.97829 1.00128 0.91158 1.21220 1.02216 0.94276 0.97316 1.17906 1.02420 0.93764 0.78652 1.91502 1.93343 1.91435 1.35590 1.21189 1.02190 1.00976 0.91757 1.21671 0.97499 0.95303 0.97540 0.92866 0.98976 0.98627 0.91872 0.95218 0.83638 0.90147 0.90471 0.80912 0.76144 0.83216 0.81055 0.83625 0.82409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -29.68 9.11 25.60 0.23 -29.44 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.63 5.23 29.85 0.16 1.78 16 10 C 0.09 3.24 5.62 86.30 0.49 3.72 16 11 N -0.69 -21.62 4.41 -517.92 -2.29 -23.91 16 12 C 0.12 3.04 5.09 85.56 0.44 3.48 16 13 C 0.08 2.18 6.26 41.37 0.26 2.44 16 14 C -0.26 -5.66 10.72 22.00 0.24 -5.42 16 15 C 0.06 1.19 12.03 85.24 1.03 2.22 16 16 N -0.32 -8.69 12.42 -56.97 -0.71 -9.40 16 17 N -0.33 -9.09 3.70 -175.96 -0.65 -9.74 16 18 C 0.12 3.29 6.09 38.08 0.23 3.52 16 19 C -0.08 -1.81 9.85 22.38 0.22 -1.59 16 20 C -0.13 -2.59 10.02 22.30 0.22 -2.37 16 21 C 0.09 2.19 7.30 22.39 0.16 2.35 16 22 F -0.14 -3.42 17.27 44.97 0.78 -2.64 16 23 C -0.14 -3.77 10.02 22.30 0.22 -3.54 16 24 C -0.10 -2.87 8.57 22.38 0.19 -2.68 16 25 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.35 10.80 8.72 -89.70 -0.78 10.02 16 31 H 0.08 2.09 7.51 -2.39 -0.02 2.07 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 34 H 0.22 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 38 H 0.16 5.17 5.37 -2.91 -0.02 5.15 16 Total: -1.00 -65.36 331.97 4.29 -61.07 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.30 Total: 19.73 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 4.55 Total: -24.87 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -3.36 Total: -98.57 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -65.36 4.29 -61.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279776296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.699 kcal (2) G-P(sol) polarization free energy of solvation -65.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds