Wall clock time and date at job start Tue Mar 31 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47496 * 2 1 4 4 C 1.53006 * 109.47022 * 119.99657 * 2 1 3 5 5 S 1.81398 * 109.47199 * 295.00143 * 4 2 1 6 6 C 1.81399 * 103.00088 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46810 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47317 * 55.00598 * 7 6 5 9 9 C 1.47200 * 109.47506 * 294.99826 * 7 6 5 10 10 N 6.19234 * 105.10847 * 68.56957 * 2 1 3 11 11 C 1.53009 * 109.46984 * 175.00045 * 7 6 5 12 12 C 1.50697 * 109.47152 * 185.00255 * 11 7 6 13 13 H 1.08002 * 120.00031 * 359.97438 * 12 11 7 14 14 C 1.37878 * 119.99823 * 179.97438 * 12 11 7 15 15 N 1.31518 * 120.00042 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99950 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47042 * 89.99960 * 16 14 12 18 18 H 1.48506 * 109.46846 * 210.00104 * 16 14 12 19 19 H 1.48495 * 109.46854 * 329.99997 * 16 14 12 20 20 C 1.50702 * 109.47573 * 239.99703 * 2 1 3 21 21 C 1.38237 * 119.99848 * 299.72873 * 20 2 1 22 22 C 1.38231 * 120.00329 * 179.78541 * 21 20 2 23 23 C 1.38243 * 119.99578 * 0.43942 * 22 21 20 24 24 C 1.38230 * 119.99828 * 359.81540 * 23 22 21 25 25 C 1.38228 * 120.00096 * 120.00043 * 20 2 1 26 26 H 1.08999 * 109.46757 * 60.00581 * 1 2 3 27 27 H 1.09007 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47430 * 300.00376 * 1 2 3 29 29 H 1.09002 * 109.47348 * 175.00252 * 4 2 1 30 30 H 1.09000 * 109.46988 * 54.99892 * 4 2 1 31 31 H 1.09000 * 109.47070 * 300.00061 * 6 5 4 32 32 H 1.09001 * 109.46593 * 60.00058 * 6 5 4 33 33 H 1.09003 * 109.46685 * 305.00467 * 11 7 6 34 34 H 1.08996 * 109.46802 * 64.99886 * 11 7 6 35 35 H 0.96996 * 120.00202 * 179.97438 * 15 14 12 36 36 H 1.08007 * 119.99855 * 359.97438 * 21 20 2 37 37 H 1.07997 * 120.00752 * 180.27783 * 22 21 20 38 38 H 1.07994 * 120.00034 * 179.82884 * 23 22 21 39 39 H 1.07996 * 120.00204 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00159 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 1.5601 0.2157 2.7266 6 6 2.2416 -0.7804 4.0809 7 6 1.9169 -0.1125 5.4185 8 1 0.8411 0.0455 5.4941 9 6 2.6103 1.1833 5.5012 10 7 3.1440 2.1843 5.5650 11 6 2.3818 -1.0136 6.5645 12 6 1.9532 -0.4152 7.8795 13 1 1.4045 0.5149 7.8963 14 6 2.2615 -1.0552 9.0612 15 7 2.9300 -2.1876 9.0408 16 14 1.7308 -0.3132 10.6913 17 1 0.3850 -0.8256 11.0537 18 1 2.7048 -0.6900 11.7471 19 1 1.6809 1.1659 10.5690 20 6 2.0324 -0.7105 -1.2304 21 6 1.7032 -2.0356 -1.4463 22 6 2.1603 -2.6861 -2.5770 23 6 2.9543 -2.0140 -3.4875 24 6 3.2879 -0.6905 -3.2690 25 6 2.8272 -0.0387 -2.1403 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1263 -0.7994 1.2058 30 1 1.6053 -1.7197 1.2953 31 1 1.8016 -1.7773 4.0557 32 1 3.3229 -0.8574 3.9665 33 1 1.9365 -2.0022 6.4528 34 1 3.4681 -1.0996 6.5413 35 1 3.1472 -2.6377 9.8721 36 1 1.0861 -2.5618 -0.7329 37 1 1.8994 -3.7200 -2.7480 38 1 3.3138 -2.5229 -4.3696 39 1 3.9086 -0.1655 -3.9800 40 1 3.0877 0.9953 -1.9697 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280192307.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:18 Heat of formation + Delta-G solvation = 19.909500 kcal Electronic energy + Delta-G solvation = -18983.694481 eV Core-core repulsion = 16081.466210 eV Total energy + Delta-G solvation = -2902.228270 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73159 -36.70751 -35.62413 -33.94393 -32.23911 -31.16758 -29.95668 -28.00288 -27.29718 -24.12806 -23.51192 -22.72686 -21.84466 -20.29561 -17.21149 -17.00224 -16.58469 -16.01455 -15.50038 -15.37856 -14.73535 -14.41372 -14.30387 -13.93533 -13.70237 -13.57311 -13.26902 -12.89919 -12.79300 -12.33192 -12.27190 -12.06642 -11.84737 -11.62126 -11.54840 -11.39404 -11.14078 -11.02456 -10.92406 -10.83782 -10.54322 -10.36793 -9.83842 -9.52918 -9.29215 -9.16762 -8.94365 -8.49266 -7.51174 -6.13446 -4.17033 1.07588 1.15227 1.76000 2.69917 3.27731 3.34610 3.39599 3.53317 3.58926 3.68689 4.38189 4.44317 4.51907 4.71213 4.74957 4.79456 4.82268 4.88647 5.18856 5.24178 5.24631 5.27055 5.30633 5.43825 5.46371 5.52817 5.71024 5.77034 5.81479 5.88482 5.90503 6.08621 6.23419 6.24871 6.26764 6.38597 6.41328 6.75209 7.35651 7.44838 7.81343 8.16908 8.42891 8.87188 9.48776 10.97395 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032478 B = 0.002655 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.913845 B =10543.480175 C =10843.550064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.035 4.035 3 H 0.086 0.914 4 C -0.080 4.080 5 S -0.265 6.265 6 C -0.073 4.073 7 C 0.025 3.975 8 H 0.110 0.890 9 C 0.242 3.758 10 N -0.464 5.464 11 C 0.036 3.964 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.893 3.107 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.071 4.071 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.115 4.115 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.027 0.973 35 H 0.263 0.737 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 -2.211 -24.237 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.055 4.055 3 H 0.105 0.895 4 C -0.228 4.228 5 S -0.037 6.037 6 C -0.223 4.223 7 C 0.002 3.998 8 H 0.128 0.872 9 C -0.076 4.076 10 N -0.140 5.140 11 C -0.004 4.004 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.720 3.280 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.073 4.073 21 C -0.131 4.131 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.133 4.133 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.815 0.120 -23.964 24.129 hybrid contribution 0.353 -1.292 0.882 1.604 sum -2.462 -1.172 -23.082 23.242 Atomic orbital electron populations 1.21909 0.93290 1.02511 1.02563 1.19909 0.96837 0.99129 0.89585 0.89542 1.23452 1.03766 1.01274 0.94294 1.86952 1.76001 1.39532 1.01194 1.23586 1.03838 1.01172 0.93668 1.18971 0.99893 0.86355 0.94618 0.87191 1.28922 0.93113 0.94134 0.91401 1.81004 1.10272 1.12556 1.10214 1.19222 0.97661 0.93904 0.89581 1.21117 1.36658 1.08137 0.90658 0.92372 1.24951 0.94815 0.94824 0.99328 1.69935 1.39122 1.16350 1.27585 0.86566 0.78473 0.79693 0.83235 1.20386 1.21110 1.19808 1.19842 0.97409 0.94274 0.95750 1.21046 1.00106 0.94273 0.97653 1.21157 0.98071 0.99913 0.94570 1.21152 0.98844 0.94913 0.99511 1.21143 1.00043 0.94989 0.97582 1.21112 0.97753 1.00047 0.94419 0.92568 0.92305 0.90782 0.90119 0.89877 0.88211 0.89678 0.94124 0.95424 0.92722 0.85951 0.86097 0.86270 0.86149 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.83 37.16 0.33 -1.00 16 2 C -0.04 -0.34 2.56 -91.77 -0.23 -0.57 16 3 H 0.09 0.88 7.88 -51.93 -0.41 0.47 16 4 C -0.08 -0.85 5.12 37.16 0.19 -0.66 16 5 S -0.27 -3.65 19.95 -107.50 -2.14 -5.79 16 6 C -0.07 -1.08 5.36 37.16 0.20 -0.89 16 7 C 0.02 0.45 2.22 -93.40 -0.21 0.25 16 8 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 9 C 0.24 5.07 13.31 -20.75 -0.28 4.80 16 10 N -0.46 -10.53 18.54 42.16 0.78 -9.75 16 11 C 0.04 0.82 4.42 -27.88 -0.12 0.70 16 12 C -0.53 -13.95 8.60 -34.44 -0.30 -14.25 16 13 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 16 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 20 C -0.07 -0.66 4.78 -104.62 -0.50 -1.16 16 21 C -0.11 -0.99 8.76 -39.58 -0.35 -1.34 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 23 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 24 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 25 C -0.12 -1.03 9.67 -39.58 -0.38 -1.41 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.50 7.41 -51.92 -0.38 0.11 16 28 H 0.07 0.75 7.13 -51.93 -0.37 0.38 16 29 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.08 0.81 7.55 -51.92 -0.39 0.41 16 31 H 0.10 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.08 1.25 8.14 -51.92 -0.42 0.82 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.12 0.95 7.17 -52.48 -0.38 0.57 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.95 7.95 -52.49 -0.42 0.54 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -29.96 354.01 -9.36 -39.32 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -6.11 Total: -2.71 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.94 Total: -18.03 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 1.52 Total: -34.31 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -2.14 Total: -5.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.96 -9.36 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280192307.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.234 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds