Wall clock time and date at job start Tue Mar 31 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47496 * 2 1 4 4 C 1.53006 * 109.47022 * 119.99657 * 2 1 3 5 5 S 1.81398 * 109.47199 * 295.00143 * 4 2 1 6 6 C 1.81399 * 103.00088 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46810 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47317 * 55.00598 * 7 6 5 9 9 C 1.47200 * 109.47506 * 294.99826 * 7 6 5 10 10 N 6.19234 * 105.10847 * 68.56957 * 2 1 3 11 11 C 1.53009 * 109.46984 * 175.00045 * 7 6 5 12 12 C 1.50697 * 109.47152 * 185.00255 * 11 7 6 13 13 H 1.08002 * 120.00031 * 359.97438 * 12 11 7 14 14 C 1.37878 * 119.99823 * 179.97438 * 12 11 7 15 15 N 1.31518 * 120.00042 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99950 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47042 * 89.99960 * 16 14 12 18 18 H 1.48506 * 109.46846 * 210.00104 * 16 14 12 19 19 H 1.48495 * 109.46854 * 329.99997 * 16 14 12 20 20 C 1.50702 * 109.47573 * 239.99703 * 2 1 3 21 21 C 1.38237 * 119.99848 * 299.72873 * 20 2 1 22 22 C 1.38231 * 120.00329 * 179.78541 * 21 20 2 23 23 C 1.38243 * 119.99578 * 0.43942 * 22 21 20 24 24 C 1.38230 * 119.99828 * 359.81540 * 23 22 21 25 25 C 1.38228 * 120.00096 * 120.00043 * 20 2 1 26 26 H 1.08999 * 109.46757 * 60.00581 * 1 2 3 27 27 H 1.09007 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47430 * 300.00376 * 1 2 3 29 29 H 1.09002 * 109.47348 * 175.00252 * 4 2 1 30 30 H 1.09000 * 109.46988 * 54.99892 * 4 2 1 31 31 H 1.09000 * 109.47070 * 300.00061 * 6 5 4 32 32 H 1.09001 * 109.46593 * 60.00058 * 6 5 4 33 33 H 1.09003 * 109.46685 * 305.00467 * 11 7 6 34 34 H 1.08996 * 109.46802 * 64.99886 * 11 7 6 35 35 H 0.96996 * 120.00202 * 179.97438 * 15 14 12 36 36 H 1.08007 * 119.99855 * 359.97438 * 21 20 2 37 37 H 1.07997 * 120.00752 * 180.27783 * 22 21 20 38 38 H 1.07994 * 120.00034 * 179.82884 * 23 22 21 39 39 H 1.07996 * 120.00204 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00159 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 1.5601 0.2157 2.7266 6 6 2.2416 -0.7804 4.0809 7 6 1.9169 -0.1125 5.4185 8 1 0.8411 0.0455 5.4941 9 6 2.6103 1.1833 5.5012 10 7 3.1440 2.1843 5.5650 11 6 2.3818 -1.0136 6.5645 12 6 1.9532 -0.4152 7.8795 13 1 1.4045 0.5149 7.8963 14 6 2.2615 -1.0552 9.0612 15 7 2.9300 -2.1876 9.0408 16 14 1.7308 -0.3132 10.6913 17 1 0.3850 -0.8256 11.0537 18 1 2.7048 -0.6900 11.7471 19 1 1.6809 1.1659 10.5690 20 6 2.0324 -0.7105 -1.2304 21 6 1.7032 -2.0356 -1.4463 22 6 2.1603 -2.6861 -2.5770 23 6 2.9543 -2.0140 -3.4875 24 6 3.2879 -0.6905 -3.2690 25 6 2.8272 -0.0387 -2.1403 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1263 -0.7994 1.2058 30 1 1.6053 -1.7197 1.2953 31 1 1.8016 -1.7773 4.0557 32 1 3.3229 -0.8574 3.9665 33 1 1.9365 -2.0022 6.4528 34 1 3.4681 -1.0996 6.5413 35 1 3.1472 -2.6377 9.8721 36 1 1.0861 -2.5618 -0.7329 37 1 1.8994 -3.7200 -2.7480 38 1 3.3138 -2.5229 -4.3696 39 1 3.9086 -0.1655 -3.9800 40 1 3.0877 0.9953 -1.9697 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280192307.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:18 Heat of formation + Delta-G solvation = 7.398472 kcal Electronic energy + Delta-G solvation = -18984.237000 eV Core-core repulsion = 16081.466210 eV Total energy + Delta-G solvation = -2902.770789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.36284 -38.37280 -36.34275 -35.74492 -34.11670 -31.76797 -30.61132 -29.60756 -28.27883 -25.69548 -24.30791 -23.61804 -23.32797 -21.00983 -18.68839 -18.37154 -17.84383 -17.08504 -16.67290 -16.27821 -16.08829 -15.44211 -15.30637 -15.06259 -14.88230 -14.48208 -14.25580 -14.16690 -13.98685 -13.80616 -13.47106 -13.24723 -13.13570 -12.96384 -12.90770 -12.65499 -12.42252 -12.31391 -12.25132 -12.07735 -11.78247 -11.61707 -11.37880 -11.16293 -10.80855 -10.56187 -9.78266 -9.59175 -8.59642 -8.21265 -6.29627 0.40610 0.53688 0.73517 1.40168 1.42131 1.51344 1.64089 1.92348 1.98928 2.41078 2.90780 3.12387 3.18281 3.71302 3.82462 3.91985 4.01737 4.15909 4.18835 4.20557 4.33651 4.43673 4.56629 4.58841 4.65059 4.70855 4.73169 4.79971 4.85359 5.00284 5.12702 5.17809 5.21788 5.36988 5.43358 5.56808 5.62224 5.66916 5.75735 5.76394 6.15550 6.16079 6.73186 6.84364 7.39076 8.89576 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032478 B = 0.002655 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.913845 B =10543.480175 C =10843.550064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.029 4.029 3 H 0.078 0.922 4 C -0.066 4.066 5 S -0.288 6.288 6 C -0.067 4.067 7 C 0.034 3.966 8 H 0.123 0.877 9 C 0.251 3.749 10 N -0.497 5.497 11 C 0.042 3.958 12 C -0.541 4.541 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.922 5.922 16 Si 0.949 3.051 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.277 1.277 20 C -0.082 4.082 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.132 4.132 24 C -0.127 4.127 25 C -0.130 4.130 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.005 0.995 35 H 0.265 0.735 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.768 -2.878 -25.515 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 H 0.096 0.904 4 C -0.214 4.214 5 S -0.059 6.059 6 C -0.216 4.216 7 C 0.012 3.988 8 H 0.141 0.859 9 C -0.065 4.065 10 N -0.175 5.175 11 C 0.003 3.997 12 C -0.579 4.579 13 H 0.072 0.928 14 C -0.186 4.186 15 N -0.562 5.562 16 Si 0.775 3.225 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.202 1.202 20 C -0.084 4.084 21 C -0.140 4.140 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.145 4.145 25 C -0.148 4.148 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.466 -0.543 -25.242 25.484 hybrid contribution 0.566 -1.089 1.175 1.699 sum -2.900 -1.632 -24.067 24.296 Atomic orbital electron populations 1.21868 0.92908 1.02933 1.02171 1.19830 0.97091 0.98609 0.89368 0.90407 1.23497 1.03758 1.01481 0.92694 1.87044 1.75927 1.40446 1.02492 1.23420 1.04156 1.01858 0.92164 1.18886 1.00084 0.84524 0.95316 0.85915 1.29412 0.92429 0.94326 0.90369 1.80998 1.11393 1.13704 1.11366 1.19030 0.96110 0.94605 0.89988 1.21520 1.36114 1.07909 0.92386 0.92831 1.25692 0.95090 0.95298 1.02512 1.70020 1.40304 1.17470 1.28384 0.85687 0.78625 0.78561 0.79675 1.19057 1.20918 1.20204 1.19827 0.98141 0.94700 0.95691 1.21220 1.00381 0.94146 0.98265 1.21449 0.97816 1.00870 0.94298 1.21474 0.98427 0.94923 1.00124 1.21414 1.00094 0.95398 0.97622 1.21299 0.98064 1.00530 0.94917 0.92107 0.91470 0.91957 0.90238 0.88411 0.86024 0.89689 0.94055 0.97688 0.92613 0.85109 0.84317 0.84292 0.84506 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.83 71.98 0.64 -1.77 16 2 C -0.03 -0.53 2.56 -11.54 -0.03 -0.56 16 3 H 0.08 1.53 7.88 -2.39 -0.02 1.51 16 4 C -0.07 -1.31 5.12 71.98 0.37 -0.94 16 5 S -0.29 -7.55 19.95 -56.49 -1.13 -8.68 16 6 C -0.07 -1.88 5.36 71.98 0.39 -1.50 16 7 C 0.03 1.25 2.22 -12.60 -0.03 1.22 16 8 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 9 C 0.25 10.49 13.31 89.44 1.19 11.68 16 10 N -0.50 -22.62 18.54 20.01 0.37 -22.25 16 11 C 0.04 1.94 4.42 29.85 0.13 2.07 16 12 C -0.54 -28.56 8.60 25.60 0.22 -28.34 16 13 H 0.05 2.82 7.59 -2.91 -0.02 2.79 16 14 C 0.01 0.72 5.46 84.65 0.46 1.19 16 15 N -0.92 -52.42 13.29 21.45 0.28 -52.14 16 16 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 C -0.08 -1.42 4.78 -19.87 -0.09 -1.51 16 21 C -0.12 -1.92 8.76 22.27 0.20 -1.72 16 22 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 23 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 24 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 25 C -0.13 -2.18 9.67 22.27 0.22 -1.96 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.02 7.41 -2.38 -0.02 1.00 16 28 H 0.06 1.21 7.13 -2.39 -0.02 1.19 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.10 1.67 7.55 -2.39 -0.02 1.65 16 31 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 36 H 0.13 1.74 7.17 -2.91 -0.02 1.72 16 37 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 39 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.13 1.89 7.95 -2.91 -0.02 1.87 16 Total: -1.00 -63.09 354.01 6.89 -56.21 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.01 Total: 8.45 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 4.32 Total: -26.91 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: 0.66 Total: -74.38 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.13 Total: -8.68 kcal Total: -63.09 6.89 -56.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280192307.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.606 kcal (2) G-P(sol) polarization free energy of solvation -63.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds