Wall clock time and date at job start Tue Mar 31 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.53003 * 109.47504 * 119.99603 * 2 1 3 5 5 S 1.81398 * 109.47030 * 295.00214 * 4 2 1 6 6 C 1.81402 * 102.99619 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46960 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47249 * 305.00506 * 7 6 5 9 9 C 1.47206 * 109.46880 * 65.00160 * 7 6 5 10 10 N 6.19235 * 69.24866 * 91.19020 * 2 1 3 11 11 C 1.53001 * 109.47467 * 185.00110 * 7 6 5 12 12 C 1.50695 * 109.47465 * 175.00379 * 11 7 6 13 13 H 1.07998 * 119.99785 * 359.97438 * 12 11 7 14 14 C 1.37875 * 120.00352 * 179.97438 * 12 11 7 15 15 N 1.31522 * 119.99582 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00165 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46718 * 90.00382 * 16 14 12 18 18 H 1.48505 * 109.46824 * 209.99775 * 16 14 12 19 19 H 1.48495 * 109.47272 * 330.00070 * 16 14 12 20 20 C 1.50702 * 109.47401 * 240.00088 * 2 1 3 21 21 C 1.38234 * 120.00271 * 119.99302 * 20 2 1 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 2 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99485 * 299.97430 * 20 2 1 26 26 H 1.08995 * 109.47834 * 60.00504 * 1 2 3 27 27 H 1.09005 * 109.46683 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46947 * 299.99812 * 1 2 3 29 29 H 1.09002 * 109.46669 * 55.00446 * 4 2 1 30 30 H 1.08999 * 109.47232 * 174.99835 * 4 2 1 31 31 H 1.08994 * 109.47232 * 299.99680 * 6 5 4 32 32 H 1.08994 * 109.47253 * 60.00604 * 6 5 4 33 33 H 1.09001 * 109.46665 * 295.00069 * 11 7 6 34 34 H 1.08996 * 109.46799 * 54.99988 * 11 7 6 35 35 H 0.97003 * 119.99482 * 179.97438 * 15 14 12 36 36 H 1.08001 * 119.99769 * 359.97438 * 21 20 2 37 37 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 39 39 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.00489 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 16 1.5602 0.2158 2.7266 6 6 2.2419 -0.7804 4.0807 7 6 1.9173 -0.1126 5.4185 8 1 2.2806 0.9151 5.4092 9 6 0.4603 -0.1161 5.6278 10 7 -0.6641 -0.1203 5.7894 11 6 2.5972 -0.8837 6.5517 12 6 2.3798 -0.1578 7.8543 13 1 1.8138 0.7618 7.8721 14 6 2.9036 -0.6676 9.0234 15 7 3.5925 -1.7877 9.0018 16 14 2.6347 0.2326 10.6380 17 1 1.3862 -0.2572 11.2757 18 1 3.7848 -0.0200 11.5429 19 1 2.5195 1.6902 10.3788 20 6 2.0324 -0.7104 -1.2305 21 6 2.8270 -0.0386 -2.1405 22 6 3.2882 -0.6904 -3.2688 23 6 2.9553 -2.0142 -3.4870 24 6 2.1615 -2.6863 -2.5764 25 6 1.6988 -2.0340 -1.4489 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6055 -1.7198 1.2952 30 1 3.1264 -0.7994 1.2056 31 1 1.8019 -1.7772 4.0557 32 1 3.3231 -0.8573 3.9665 33 1 2.1699 -1.8842 6.6177 34 1 3.6659 -0.9574 6.3508 35 1 3.9613 -2.1462 9.8242 36 1 3.0875 0.9956 -1.9698 37 1 3.9094 -0.1657 -3.9796 38 1 3.3120 -2.5222 -4.3708 39 1 1.9011 -3.7205 -2.7470 40 1 1.0779 -2.5589 -0.7380 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280192315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:25 Heat of formation + Delta-G solvation = 19.961706 kcal Electronic energy + Delta-G solvation = -18994.252280 eV Core-core repulsion = 16092.026274 eV Total energy + Delta-G solvation = -2902.226007 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.73226 -36.71242 -35.62343 -33.94809 -32.23907 -31.16863 -29.95591 -28.00113 -27.29686 -24.12503 -23.51367 -22.72640 -21.84456 -20.29779 -17.21361 -16.96987 -16.60317 -16.03919 -15.49698 -15.36721 -14.74027 -14.41384 -14.31581 -13.85283 -13.74803 -13.56723 -13.27502 -13.01611 -12.66176 -12.41135 -12.19723 -12.06671 -11.86282 -11.62495 -11.58136 -11.35600 -11.12067 -11.02654 -10.95055 -10.84856 -10.53400 -10.36380 -9.83862 -9.53108 -9.29241 -9.16857 -8.94477 -8.49241 -7.51068 -6.13448 -4.17025 1.07500 1.15139 1.75994 2.69877 3.28394 3.34966 3.38584 3.53235 3.58767 3.68507 4.38166 4.44282 4.51879 4.71280 4.74818 4.79439 4.82294 4.88695 5.19120 5.24134 5.24682 5.26773 5.30605 5.44210 5.46437 5.52772 5.71269 5.76989 5.81700 5.88327 5.90857 6.09946 6.23477 6.24858 6.26830 6.38638 6.41319 6.75108 7.35811 7.44705 7.81359 8.16922 8.42548 8.87184 9.48782 10.97391 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032246 B = 0.002665 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.122878 B =10503.008194 C =10877.386240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 H 0.087 0.913 4 C -0.080 4.080 5 S -0.265 6.265 6 C -0.073 4.073 7 C 0.024 3.976 8 H 0.110 0.890 9 C 0.242 3.758 10 N -0.464 5.464 11 C 0.036 3.964 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.071 4.071 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.119 4.119 25 C -0.113 4.113 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.027 0.973 34 H 0.041 0.959 35 H 0.263 0.737 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.986 0.301 -24.494 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.054 4.054 3 H 0.106 0.894 4 C -0.228 4.228 5 S -0.037 6.037 6 C -0.223 4.223 7 C 0.001 3.999 8 H 0.128 0.872 9 C -0.075 4.075 10 N -0.141 5.141 11 C -0.004 4.004 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.073 4.073 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.137 4.137 25 C -0.131 4.131 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.189 1.125 -24.076 24.132 hybrid contribution 1.112 -0.836 0.843 1.626 sum -0.078 0.289 -23.233 23.235 Atomic orbital electron populations 1.21915 0.93387 1.02503 1.02555 1.19904 0.96753 0.99136 0.89586 0.89428 1.23453 1.03781 1.01275 0.94289 1.86953 1.76456 1.39118 1.01148 1.23584 1.04160 1.00877 0.93639 1.18974 0.83136 1.03384 0.94363 0.87202 1.28910 0.94751 0.92366 0.91512 1.80991 1.13333 1.09540 1.10187 1.19219 0.96048 0.95264 0.89838 1.21115 1.34494 1.09063 0.91900 0.92373 1.24952 0.94816 0.94928 0.99228 1.69942 1.35235 1.19778 1.28035 0.86565 0.77812 0.80257 0.83314 1.20600 1.21043 1.19667 1.19842 0.97398 0.94268 0.95756 1.21104 0.97779 1.00020 0.94385 1.21142 1.00050 0.94962 0.97601 1.21152 0.98870 0.94929 0.99462 1.21157 0.98029 0.99904 0.94613 1.21051 1.00037 0.94334 0.97685 0.92527 0.92403 0.90836 0.90082 0.89908 0.89646 0.88244 0.95429 0.94119 0.92727 0.85958 0.86128 0.86269 0.86126 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.83 37.16 0.33 -1.11 16 2 C -0.03 -0.33 2.56 -91.77 -0.23 -0.57 16 3 H 0.09 0.84 7.88 -51.93 -0.41 0.44 16 4 C -0.08 -0.85 5.12 37.16 0.19 -0.66 16 5 S -0.27 -3.65 19.95 -107.50 -2.14 -5.79 16 6 C -0.07 -1.08 5.36 37.16 0.20 -0.89 16 7 C 0.02 0.45 2.22 -93.40 -0.21 0.24 16 8 H 0.11 1.95 8.14 -51.93 -0.42 1.52 16 9 C 0.24 5.05 13.31 -20.76 -0.28 4.78 16 10 N -0.46 -10.46 18.54 42.15 0.78 -9.67 16 11 C 0.04 0.82 4.42 -27.88 -0.12 0.70 16 12 C -0.53 -13.96 8.60 -34.44 -0.30 -14.25 16 13 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 16 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.07 -0.66 4.78 -104.62 -0.50 -1.16 16 21 C -0.11 -0.99 9.67 -39.59 -0.38 -1.38 16 22 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 23 C -0.13 -0.98 10.05 -39.58 -0.40 -1.38 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.11 -1.02 8.76 -39.58 -0.35 -1.36 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.55 7.39 -51.93 -0.38 0.16 16 28 H 0.07 0.83 7.13 -51.93 -0.37 0.46 16 29 H 0.08 0.84 7.57 -51.92 -0.39 0.44 16 30 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.12 0.90 7.95 -52.49 -0.42 0.48 16 37 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.12 1.00 7.16 -52.49 -0.38 0.63 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -29.85 354.01 -9.36 -39.21 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.11 Total: -2.58 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -2.94 Total: -18.13 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 1.52 Total: -34.25 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -2.14 Total: -5.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.85 -9.36 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280192315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.177 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds