Wall clock time and date at job start Tue Mar 31 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.53003 * 109.47504 * 119.99603 * 2 1 3 5 5 S 1.81398 * 109.47030 * 295.00214 * 4 2 1 6 6 C 1.81402 * 102.99619 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46960 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47249 * 305.00506 * 7 6 5 9 9 C 1.47206 * 109.46880 * 65.00160 * 7 6 5 10 10 N 6.19235 * 69.24866 * 91.19020 * 2 1 3 11 11 C 1.53001 * 109.47467 * 185.00110 * 7 6 5 12 12 C 1.50695 * 109.47465 * 175.00379 * 11 7 6 13 13 H 1.07998 * 119.99785 * 359.97438 * 12 11 7 14 14 C 1.37875 * 120.00352 * 179.97438 * 12 11 7 15 15 N 1.31522 * 119.99582 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00165 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46718 * 90.00382 * 16 14 12 18 18 H 1.48505 * 109.46824 * 209.99775 * 16 14 12 19 19 H 1.48495 * 109.47272 * 330.00070 * 16 14 12 20 20 C 1.50702 * 109.47401 * 240.00088 * 2 1 3 21 21 C 1.38234 * 120.00271 * 119.99302 * 20 2 1 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 2 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99485 * 299.97430 * 20 2 1 26 26 H 1.08995 * 109.47834 * 60.00504 * 1 2 3 27 27 H 1.09005 * 109.46683 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46947 * 299.99812 * 1 2 3 29 29 H 1.09002 * 109.46669 * 55.00446 * 4 2 1 30 30 H 1.08999 * 109.47232 * 174.99835 * 4 2 1 31 31 H 1.08994 * 109.47232 * 299.99680 * 6 5 4 32 32 H 1.08994 * 109.47253 * 60.00604 * 6 5 4 33 33 H 1.09001 * 109.46665 * 295.00069 * 11 7 6 34 34 H 1.08996 * 109.46799 * 54.99988 * 11 7 6 35 35 H 0.97003 * 119.99482 * 179.97438 * 15 14 12 36 36 H 1.08001 * 119.99769 * 359.97438 * 21 20 2 37 37 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 39 39 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.00489 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 16 1.5602 0.2158 2.7266 6 6 2.2419 -0.7804 4.0807 7 6 1.9173 -0.1126 5.4185 8 1 2.2806 0.9151 5.4092 9 6 0.4603 -0.1161 5.6278 10 7 -0.6641 -0.1203 5.7894 11 6 2.5972 -0.8837 6.5517 12 6 2.3798 -0.1578 7.8543 13 1 1.8138 0.7618 7.8721 14 6 2.9036 -0.6676 9.0234 15 7 3.5925 -1.7877 9.0018 16 14 2.6347 0.2326 10.6380 17 1 1.3862 -0.2572 11.2757 18 1 3.7848 -0.0200 11.5429 19 1 2.5195 1.6902 10.3788 20 6 2.0324 -0.7104 -1.2305 21 6 2.8270 -0.0386 -2.1405 22 6 3.2882 -0.6904 -3.2688 23 6 2.9553 -2.0142 -3.4870 24 6 2.1615 -2.6863 -2.5764 25 6 1.6988 -2.0340 -1.4489 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6055 -1.7198 1.2952 30 1 3.1264 -0.7994 1.2056 31 1 1.8019 -1.7772 4.0557 32 1 3.3231 -0.8573 3.9665 33 1 2.1699 -1.8842 6.6177 34 1 3.6659 -0.9574 6.3508 35 1 3.9613 -2.1462 9.8242 36 1 3.0875 0.9956 -1.9698 37 1 3.9094 -0.1657 -3.9796 38 1 3.3120 -2.5222 -4.3708 39 1 1.9011 -3.7205 -2.7470 40 1 1.0779 -2.5589 -0.7380 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280192315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:24 Heat of formation + Delta-G solvation = 7.573552 kcal Electronic energy + Delta-G solvation = -18994.789471 eV Core-core repulsion = 16092.026274 eV Total energy + Delta-G solvation = -2902.763197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36239 -38.37357 -36.34985 -35.74467 -34.11686 -31.76485 -30.61284 -29.61006 -28.30663 -25.69796 -24.31325 -23.62028 -23.32171 -21.01509 -18.68070 -18.36039 -17.84975 -17.11289 -16.66219 -16.25932 -16.10960 -15.43307 -15.28660 -15.06892 -14.87218 -14.47920 -14.36825 -14.13472 -13.98038 -13.69920 -13.58463 -13.21532 -13.13654 -13.00611 -12.91091 -12.68177 -12.39574 -12.29708 -12.27186 -12.08570 -11.78571 -11.62045 -11.38397 -11.15733 -10.81435 -10.57102 -9.77871 -9.59117 -8.59561 -8.21378 -6.29761 0.40792 0.54036 0.73503 1.39921 1.42193 1.51476 1.63902 1.92967 1.99535 2.41018 2.91021 3.12426 3.18394 3.70684 3.81845 3.91837 4.01701 4.15942 4.18736 4.20624 4.33538 4.42892 4.56805 4.57698 4.64812 4.68795 4.72758 4.79578 4.85197 4.96739 5.10961 5.16609 5.21836 5.32476 5.43205 5.56538 5.62526 5.67282 5.75920 5.76292 6.15797 6.15950 6.73508 6.84326 7.38925 8.89478 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032246 B = 0.002665 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.122878 B =10503.008194 C =10877.386240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.028 4.028 3 H 0.087 0.913 4 C -0.067 4.067 5 S -0.287 6.287 6 C -0.067 4.067 7 C 0.034 3.966 8 H 0.122 0.878 9 C 0.252 3.748 10 N -0.496 5.496 11 C 0.042 3.958 12 C -0.541 4.541 13 H 0.054 0.946 14 C 0.013 3.987 15 N -0.922 5.922 16 Si 0.948 3.052 17 H -0.283 1.283 18 H -0.277 1.277 19 H -0.265 1.265 20 C -0.081 4.081 21 C -0.125 4.125 22 C -0.126 4.126 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.125 4.125 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.005 0.995 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.634 0.606 -25.957 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.047 4.047 3 H 0.106 0.894 4 C -0.215 4.215 5 S -0.059 6.059 6 C -0.216 4.216 7 C 0.012 3.988 8 H 0.140 0.860 9 C -0.065 4.065 10 N -0.173 5.173 11 C 0.003 3.997 12 C -0.579 4.579 13 H 0.072 0.928 14 C -0.186 4.186 15 N -0.562 5.562 16 Si 0.774 3.226 17 H -0.210 1.210 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.083 4.083 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.143 4.143 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.137 0.863 33 H 0.024 0.976 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.542 1.440 -25.540 25.586 hybrid contribution 0.909 -0.946 1.192 1.772 sum 0.366 0.494 -24.348 24.355 Atomic orbital electron populations 1.21874 0.93683 1.02460 1.02038 1.19824 0.96437 0.99083 0.89368 0.89446 1.23498 1.04283 1.00972 0.92716 1.87040 1.76736 1.39664 1.02422 1.23414 1.05496 1.00535 0.92165 1.18875 0.81206 1.03729 0.95006 0.86025 1.29367 0.95220 0.91387 0.90546 1.80985 1.14410 1.10664 1.11250 1.19028 0.96209 0.94254 0.90253 1.21522 1.33784 1.09033 0.93570 0.92783 1.25697 0.94866 0.95699 1.02361 1.70027 1.36307 1.21014 1.28849 0.85693 0.77592 0.79484 0.79837 1.20960 1.20250 1.18889 1.19810 0.98212 0.94523 0.95767 1.21315 0.97751 1.00657 0.94619 1.21437 1.00008 0.95235 0.97682 1.21472 0.98376 0.95065 0.99984 1.21421 0.97968 1.00779 0.94426 1.21189 1.00435 0.94436 0.98272 0.91834 0.92228 0.92467 0.89605 0.89092 0.89489 0.86269 0.97643 0.94148 0.92620 0.85017 0.84236 0.84294 0.84629 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.83 71.98 0.64 -2.05 16 2 C -0.03 -0.50 2.56 -11.54 -0.03 -0.53 16 3 H 0.09 1.57 7.88 -2.38 -0.02 1.55 16 4 C -0.07 -1.32 5.12 71.98 0.37 -0.95 16 5 S -0.29 -7.55 19.95 -56.49 -1.13 -8.68 16 6 C -0.07 -1.89 5.36 71.98 0.39 -1.51 16 7 C 0.03 1.25 2.22 -12.60 -0.03 1.22 16 8 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 9 C 0.25 10.44 13.31 89.45 1.19 11.63 16 10 N -0.50 -22.35 18.54 20.01 0.37 -21.98 16 11 C 0.04 1.93 4.42 29.85 0.13 2.07 16 12 C -0.54 -28.57 8.60 25.60 0.22 -28.35 16 13 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 14 C 0.01 0.71 5.46 84.65 0.46 1.17 16 15 N -0.92 -52.52 13.29 21.45 0.28 -52.24 16 16 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 20 C -0.08 -1.39 4.78 -19.87 -0.09 -1.49 16 21 C -0.13 -1.96 9.67 22.27 0.22 -1.74 16 22 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 23 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 24 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 25 C -0.13 -2.07 8.76 22.27 0.20 -1.88 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.08 7.39 -2.38 -0.02 1.06 16 28 H 0.06 1.26 7.13 -2.38 -0.02 1.24 16 29 H 0.09 1.64 7.57 -2.39 -0.02 1.62 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.13 1.71 7.95 -2.91 -0.02 1.68 16 37 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.12 1.90 7.16 -2.91 -0.02 1.88 16 Total: -1.00 -62.76 354.01 6.89 -55.88 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.01 Total: 8.78 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 4.32 Total: -27.08 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: 0.66 Total: -74.22 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.13 Total: -8.68 kcal Total: -62.76 6.89 -55.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280192315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.450 kcal (2) G-P(sol) polarization free energy of solvation -62.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds