Wall clock time and date at job start Tue Mar 31 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47234 * 239.99810 * 2 1 3 5 5 S 1.81394 * 109.46950 * 65.00127 * 4 2 1 6 6 C 1.81399 * 102.99894 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47445 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.46941 * 305.00818 * 7 6 5 9 9 C 1.47202 * 109.46577 * 65.00054 * 7 6 5 10 10 N 6.19224 * 105.11079 * 291.42666 * 2 1 3 11 11 C 1.53000 * 109.47147 * 184.99998 * 7 6 5 12 12 C 1.50707 * 109.46699 * 175.00362 * 11 7 6 13 13 H 1.08001 * 119.99883 * 359.97438 * 12 11 7 14 14 C 1.37868 * 119.99528 * 180.02562 * 12 11 7 15 15 N 1.31519 * 119.99749 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00481 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47324 * 90.00102 * 16 14 12 18 18 H 1.48508 * 109.47267 * 210.00203 * 16 14 12 19 19 H 1.48498 * 109.47020 * 329.99783 * 16 14 12 20 20 C 1.50702 * 109.47262 * 119.99608 * 2 1 3 21 21 C 1.38239 * 119.99728 * 59.72609 * 20 2 1 22 22 C 1.38234 * 119.99860 * 179.80993 * 21 20 2 23 23 C 1.38231 * 120.00231 * 0.40384 * 22 21 20 24 24 C 1.38239 * 119.99992 * 359.84953 * 23 22 21 25 25 C 1.38234 * 119.99691 * 359.96424 * 24 23 22 26 26 H 1.09007 * 109.47193 * 300.00334 * 1 2 3 27 27 H 1.09002 * 109.47240 * 59.99833 * 1 2 3 28 28 H 1.08997 * 109.46979 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46725 * 305.00012 * 4 2 1 30 30 H 1.08998 * 109.46794 * 184.99836 * 4 2 1 31 31 H 1.09001 * 109.47190 * 299.99732 * 6 5 4 32 32 H 1.09004 * 109.47089 * 59.99865 * 6 5 4 33 33 H 1.09004 * 109.47111 * 294.99704 * 11 7 6 34 34 H 1.08998 * 109.47281 * 55.00484 * 11 7 6 35 35 H 0.97006 * 119.99975 * 179.97438 * 15 14 12 36 36 H 1.08001 * 119.99842 * 359.97438 * 21 20 2 37 37 H 1.08006 * 119.99846 * 180.22814 * 22 21 20 38 38 H 1.07997 * 120.00478 * 179.83461 * 23 22 21 39 39 H 1.07997 * 119.99994 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.00163 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 1.5601 0.2155 -2.7265 6 6 2.2431 -0.7798 -4.0805 7 6 1.9176 -0.1127 -5.4185 8 1 0.8416 0.0440 -5.4940 9 6 2.6092 1.1840 -5.5012 10 7 3.1442 2.1839 -5.5650 11 6 2.3837 -1.0134 -6.5642 12 6 1.9544 -0.4157 -7.8794 13 1 1.4039 0.5133 -7.8963 14 6 2.2636 -1.0555 -9.0608 15 7 1.8886 -0.5342 -10.2086 16 14 3.2152 -2.6626 -9.0315 17 1 2.2637 -3.8000 -8.9535 18 1 4.0267 -2.7801 -10.2697 19 1 4.1120 -2.6854 -7.8481 20 6 2.0323 -0.7103 1.2305 21 6 1.6937 -2.0321 1.4522 22 6 2.1577 -2.6849 2.5789 23 6 2.9535 -2.0135 3.4882 24 6 3.2878 -0.6901 3.2692 25 6 2.8270 -0.0385 2.1405 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6053 -1.7198 -1.2950 30 1 3.1263 -0.7994 -1.2055 31 1 3.3244 -0.8562 -3.9658 32 1 1.8038 -1.7771 -4.0558 33 1 3.4702 -1.0979 -6.5409 34 1 1.9397 -2.0025 -6.4524 35 1 2.1065 -0.9842 -11.0399 36 1 1.0688 -2.5556 0.7437 37 1 1.8962 -3.7187 2.7502 38 1 3.3138 -2.5226 4.3698 39 1 3.9092 -0.1655 3.9798 40 1 3.0878 0.9955 1.9696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280192318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:28 Heat of formation + Delta-G solvation = 24.569466 kcal Electronic energy + Delta-G solvation = -19034.559902 eV Core-core repulsion = 16132.533702 eV Total energy + Delta-G solvation = -2902.026199 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.77082 -36.82443 -35.66853 -34.00817 -32.27093 -31.20533 -29.99783 -28.46581 -27.46916 -24.19106 -23.53035 -22.76095 -21.55896 -20.34213 -17.25213 -17.05626 -16.96900 -16.11697 -15.63519 -15.42506 -14.67487 -14.45628 -14.22174 -14.07309 -13.70742 -13.61438 -13.43701 -12.95097 -12.72665 -12.51007 -12.40652 -12.29817 -12.04140 -11.67099 -11.60932 -11.52287 -11.31730 -11.08089 -10.96775 -10.93766 -10.48730 -10.05689 -9.85505 -9.74049 -9.38665 -9.20571 -8.98699 -8.65369 -7.57933 -6.14014 -4.15409 1.03553 1.11435 1.67773 2.61774 3.22915 3.31970 3.32299 3.49465 3.54776 3.63477 4.34713 4.39886 4.47771 4.60642 4.70939 4.75131 4.77419 4.84728 5.13043 5.16789 5.20231 5.20411 5.23090 5.35062 5.38981 5.47709 5.66932 5.73013 5.74722 5.77823 5.86397 6.05169 6.07503 6.18537 6.19818 6.23087 6.37316 6.71411 6.84541 7.04304 7.57344 8.34352 8.40354 8.89137 9.45043 10.98967 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.002872 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.722374 B = 9748.656614 C =10247.041200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.035 4.035 3 H 0.087 0.913 4 C -0.081 4.081 5 S -0.258 6.258 6 C -0.079 4.079 7 C 0.035 3.965 8 H 0.116 0.884 9 C 0.239 3.761 10 N -0.455 5.455 11 C 0.000 4.000 12 C -0.530 4.530 13 H 0.075 0.925 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.877 3.123 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.264 1.264 20 C -0.071 4.071 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.119 4.119 25 C -0.115 4.115 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.026 0.974 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 -5.843 27.185 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.055 4.055 3 H 0.105 0.895 4 C -0.229 4.229 5 S -0.030 6.030 6 C -0.228 4.228 7 C 0.012 3.988 8 H 0.133 0.867 9 C -0.079 4.079 10 N -0.132 5.132 11 C -0.041 4.041 12 C -0.567 4.567 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.704 3.296 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.189 1.189 20 C -0.073 4.073 21 C -0.131 4.131 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.137 4.137 25 C -0.133 4.133 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.498 -3.400 26.823 27.042 hybrid contribution 1.046 -2.428 -0.118 2.646 sum 0.547 -5.827 26.705 27.339 Atomic orbital electron populations 1.21915 0.93248 1.02518 1.02630 1.19905 0.96865 0.99148 0.89545 0.89494 1.23462 1.03766 1.01293 0.94365 1.87020 1.75773 1.39256 1.00910 1.23605 1.03889 1.01305 0.94025 1.18696 1.00349 0.86087 0.93663 0.86656 1.28746 0.93278 0.94176 0.91696 1.81002 1.10053 1.12322 1.09792 1.19682 0.97343 0.94580 0.92454 1.20994 1.37294 1.09952 0.88510 0.90656 1.24978 0.95167 0.97518 0.95370 1.69906 1.46193 1.39538 0.97643 0.86823 0.80642 0.84155 0.77980 1.19954 1.21233 1.18891 1.19841 0.97419 0.94301 0.95741 1.21043 1.00048 0.94315 0.97700 1.21156 0.98050 0.99895 0.94628 1.21156 0.98846 0.94921 0.99484 1.21150 1.00017 0.94986 0.97582 1.21117 0.97776 1.00037 0.94384 0.92520 0.90750 0.92305 0.89878 0.90115 0.89637 0.88214 0.95528 0.94629 0.92487 0.85970 0.86104 0.86256 0.86121 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.83 37.16 0.33 -0.95 16 2 C -0.04 -0.32 2.56 -91.77 -0.23 -0.56 16 3 H 0.09 0.85 7.88 -51.93 -0.41 0.44 16 4 C -0.08 -0.81 5.13 37.16 0.19 -0.62 16 5 S -0.26 -3.40 19.95 -107.50 -2.14 -5.54 16 6 C -0.08 -1.08 5.36 37.16 0.20 -0.89 16 7 C 0.03 0.62 2.22 -93.40 -0.21 0.41 16 8 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 9 C 0.24 4.94 13.31 -20.77 -0.28 4.66 16 10 N -0.46 -10.31 18.54 42.14 0.78 -9.53 16 11 C 0.00 -0.01 3.49 -27.88 -0.10 -0.11 16 12 C -0.53 -14.16 9.15 -34.44 -0.32 -14.47 16 13 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 16 Si 0.88 20.38 27.47 -169.99 -4.67 15.71 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 20 C -0.07 -0.64 4.78 -104.62 -0.50 -1.14 16 21 C -0.11 -0.95 8.76 -39.58 -0.35 -1.29 16 22 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 23 C -0.13 -0.95 10.05 -39.58 -0.40 -1.35 16 24 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 25 C -0.11 -0.99 9.67 -39.58 -0.38 -1.37 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.73 7.13 -51.93 -0.37 0.36 16 28 H 0.06 0.48 7.37 -51.93 -0.38 0.09 16 29 H 0.08 0.75 7.59 -51.92 -0.39 0.35 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 32 H 0.10 1.16 8.14 -51.92 -0.42 0.73 16 33 H 0.03 0.57 7.20 -51.93 -0.37 0.20 16 34 H 0.04 0.69 7.57 -51.93 -0.39 0.30 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.12 0.89 7.16 -52.49 -0.38 0.52 16 37 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.12 0.92 7.95 -52.49 -0.42 0.50 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -31.17 350.41 -8.99 -40.16 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.08 Total: -1.59 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -2.93 Total: -18.41 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 1.55 Total: -35.60 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.14 Total: -5.54 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.17 -8.99 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280192318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.727 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds