Wall clock time and date at job start Tue Mar 31 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47234 * 239.99810 * 2 1 3 5 5 S 1.81394 * 109.46950 * 65.00127 * 4 2 1 6 6 C 1.81399 * 102.99894 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47445 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.46941 * 305.00818 * 7 6 5 9 9 C 1.47202 * 109.46577 * 65.00054 * 7 6 5 10 10 N 6.19224 * 105.11079 * 291.42666 * 2 1 3 11 11 C 1.53000 * 109.47147 * 184.99998 * 7 6 5 12 12 C 1.50707 * 109.46699 * 175.00362 * 11 7 6 13 13 H 1.08001 * 119.99883 * 359.97438 * 12 11 7 14 14 C 1.37868 * 119.99528 * 180.02562 * 12 11 7 15 15 N 1.31519 * 119.99749 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00481 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47324 * 90.00102 * 16 14 12 18 18 H 1.48508 * 109.47267 * 210.00203 * 16 14 12 19 19 H 1.48498 * 109.47020 * 329.99783 * 16 14 12 20 20 C 1.50702 * 109.47262 * 119.99608 * 2 1 3 21 21 C 1.38239 * 119.99728 * 59.72609 * 20 2 1 22 22 C 1.38234 * 119.99860 * 179.80993 * 21 20 2 23 23 C 1.38231 * 120.00231 * 0.40384 * 22 21 20 24 24 C 1.38239 * 119.99992 * 359.84953 * 23 22 21 25 25 C 1.38234 * 119.99691 * 359.96424 * 24 23 22 26 26 H 1.09007 * 109.47193 * 300.00334 * 1 2 3 27 27 H 1.09002 * 109.47240 * 59.99833 * 1 2 3 28 28 H 1.08997 * 109.46979 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46725 * 305.00012 * 4 2 1 30 30 H 1.08998 * 109.46794 * 184.99836 * 4 2 1 31 31 H 1.09001 * 109.47190 * 299.99732 * 6 5 4 32 32 H 1.09004 * 109.47089 * 59.99865 * 6 5 4 33 33 H 1.09004 * 109.47111 * 294.99704 * 11 7 6 34 34 H 1.08998 * 109.47281 * 55.00484 * 11 7 6 35 35 H 0.97006 * 119.99975 * 179.97438 * 15 14 12 36 36 H 1.08001 * 119.99842 * 359.97438 * 21 20 2 37 37 H 1.08006 * 119.99846 * 180.22814 * 22 21 20 38 38 H 1.07997 * 120.00478 * 179.83461 * 23 22 21 39 39 H 1.07997 * 119.99994 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.00163 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 1.5601 0.2155 -2.7265 6 6 2.2431 -0.7798 -4.0805 7 6 1.9176 -0.1127 -5.4185 8 1 0.8416 0.0440 -5.4940 9 6 2.6092 1.1840 -5.5012 10 7 3.1442 2.1839 -5.5650 11 6 2.3837 -1.0134 -6.5642 12 6 1.9544 -0.4157 -7.8794 13 1 1.4039 0.5133 -7.8963 14 6 2.2636 -1.0555 -9.0608 15 7 1.8886 -0.5342 -10.2086 16 14 3.2152 -2.6626 -9.0315 17 1 2.2637 -3.8000 -8.9535 18 1 4.0267 -2.7801 -10.2697 19 1 4.1120 -2.6854 -7.8481 20 6 2.0323 -0.7103 1.2305 21 6 1.6937 -2.0321 1.4522 22 6 2.1577 -2.6849 2.5789 23 6 2.9535 -2.0135 3.4882 24 6 3.2878 -0.6901 3.2692 25 6 2.8270 -0.0385 2.1405 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6053 -1.7198 -1.2950 30 1 3.1263 -0.7994 -1.2055 31 1 3.3244 -0.8562 -3.9658 32 1 1.8038 -1.7771 -4.0558 33 1 3.4702 -1.0979 -6.5409 34 1 1.9397 -2.0025 -6.4524 35 1 2.1065 -0.9842 -11.0399 36 1 1.0688 -2.5556 0.7437 37 1 1.8962 -3.7187 2.7502 38 1 3.3138 -2.5226 4.3698 39 1 3.9092 -0.1655 3.9798 40 1 3.0878 0.9955 1.9696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280192318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:28 Heat of formation + Delta-G solvation = 9.583607 kcal Electronic energy + Delta-G solvation = -19035.209737 eV Core-core repulsion = 16132.533702 eV Total energy + Delta-G solvation = -2902.676035 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36211 -38.42756 -36.34050 -35.74505 -34.19531 -31.76740 -30.60975 -30.09744 -28.30866 -25.60691 -24.26769 -23.38938 -23.28663 -21.01201 -18.97649 -18.51378 -17.84115 -17.15812 -16.58262 -16.13811 -16.07900 -15.50267 -15.36046 -15.05605 -14.92969 -14.47669 -14.32389 -14.17327 -14.11213 -13.91688 -13.56007 -13.28527 -13.20150 -13.01616 -12.91627 -12.60209 -12.30520 -12.25198 -12.15471 -11.87130 -11.70012 -11.62204 -11.39467 -11.34441 -10.79331 -10.73568 -9.78263 -9.59131 -8.59155 -8.25186 -6.31706 0.40775 0.53716 0.73799 1.42889 1.46121 1.56058 1.65826 1.92180 1.97944 2.40842 2.90834 3.08615 3.16548 3.71637 3.81530 3.87084 4.02134 4.16097 4.19537 4.20765 4.33733 4.44252 4.49568 4.58920 4.64985 4.65507 4.71606 4.79657 4.80349 5.00190 5.13035 5.17819 5.18237 5.21912 5.36949 5.38762 5.61724 5.62278 5.67037 5.75789 6.15572 6.23771 6.72312 6.78323 7.32763 8.91807 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.002872 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.722374 B = 9748.656614 C =10247.041200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 H 0.076 0.924 4 C -0.064 4.064 5 S -0.296 6.296 6 C -0.069 4.069 7 C 0.039 3.961 8 H 0.119 0.881 9 C 0.248 3.752 10 N -0.499 5.499 11 C 0.002 3.998 12 C -0.534 4.534 13 H 0.028 0.972 14 C 0.003 3.997 15 N -0.954 5.954 16 Si 0.950 3.050 17 H -0.255 1.255 18 H -0.296 1.296 19 H -0.236 1.236 20 C -0.081 4.081 21 C -0.121 4.121 22 C -0.126 4.126 23 C -0.132 4.132 24 C -0.128 4.128 25 C -0.131 4.131 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.131 0.869 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.265 0.735 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.075 -8.831 29.722 31.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.050 4.050 3 H 0.094 0.906 4 C -0.212 4.212 5 S -0.068 6.068 6 C -0.218 4.218 7 C 0.017 3.983 8 H 0.137 0.863 9 C -0.068 4.068 10 N -0.176 5.176 11 C -0.038 4.038 12 C -0.572 4.572 13 H 0.046 0.954 14 C -0.194 4.194 15 N -0.594 5.594 16 Si 0.773 3.227 17 H -0.180 1.180 18 H -0.223 1.223 19 H -0.159 1.159 20 C -0.083 4.083 21 C -0.139 4.139 22 C -0.144 4.144 23 C -0.150 4.150 24 C -0.146 4.146 25 C -0.149 4.149 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.150 0.850 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.156 -6.383 29.393 30.078 hybrid contribution 0.781 -1.397 -0.835 1.805 sum 0.937 -7.780 28.557 29.613 Atomic orbital electron populations 1.21871 0.93005 1.02963 1.02080 1.19825 0.97007 0.98596 0.89546 0.90585 1.23481 1.03844 1.01448 0.92440 1.87233 1.75943 1.40736 1.02840 1.23474 1.04696 1.02050 0.91549 1.18747 1.00070 0.84284 0.95246 0.86298 1.29456 0.92467 0.94547 0.90366 1.80993 1.11602 1.13675 1.11318 1.19626 0.97653 0.96148 0.90398 1.21365 1.36007 1.08316 0.91504 0.95386 1.26056 0.96515 1.02069 0.94742 1.70095 1.48679 1.41991 0.98656 0.85667 0.79506 0.79049 0.78518 1.17961 1.22255 1.15864 1.19825 0.98086 0.94750 0.95657 1.21222 1.00262 0.94127 0.98298 1.21452 0.97749 1.00862 0.94344 1.21473 0.98487 0.94906 1.00115 1.21411 1.00111 0.95425 0.97624 1.21296 0.98180 1.00471 0.94925 0.92279 0.92049 0.91334 0.88143 0.90029 0.88852 0.85044 0.95074 0.91358 0.92599 0.84946 0.84273 0.84341 0.84597 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.83 71.98 0.64 -1.66 16 2 C -0.03 -0.51 2.56 -11.54 -0.03 -0.54 16 3 H 0.08 1.44 7.88 -2.39 -0.02 1.42 16 4 C -0.06 -1.13 5.13 71.98 0.37 -0.77 16 5 S -0.30 -7.29 19.95 -56.49 -1.13 -8.42 16 6 C -0.07 -1.68 5.36 71.98 0.39 -1.29 16 7 C 0.04 1.33 2.22 -12.60 -0.03 1.30 16 8 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 9 C 0.25 10.27 13.31 89.45 1.19 11.46 16 10 N -0.50 -22.96 18.54 20.00 0.37 -22.59 16 11 C 0.00 0.07 3.49 29.85 0.10 0.18 16 12 C -0.53 -28.76 9.15 25.60 0.23 -28.52 16 13 H 0.03 1.72 7.84 -2.91 -0.02 1.69 16 14 C 0.00 0.17 5.47 84.65 0.46 0.63 16 15 N -0.95 -58.97 13.96 21.44 0.30 -58.67 16 16 Si 0.95 40.86 27.47 68.60 1.88 42.75 16 17 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 18 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.24 -8.98 6.54 99.48 0.65 -8.33 16 20 C -0.08 -1.32 4.78 -19.86 -0.09 -1.41 16 21 C -0.12 -1.74 8.76 22.27 0.20 -1.54 16 22 C -0.13 -1.63 10.05 22.27 0.22 -1.40 16 23 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 24 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 25 C -0.13 -2.08 9.67 22.27 0.22 -1.87 16 26 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.06 1.16 7.13 -2.39 -0.02 1.14 16 28 H 0.07 0.96 7.37 -2.39 -0.02 0.95 16 29 H 0.10 1.46 7.59 -2.39 -0.02 1.44 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.13 2.41 8.14 -2.39 -0.02 2.40 16 33 H 0.03 1.23 7.20 -2.39 -0.02 1.21 16 34 H 0.07 2.34 7.57 -2.39 -0.02 2.32 16 35 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 36 H 0.13 1.54 7.16 -2.91 -0.02 1.52 16 37 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.12 1.80 7.95 -2.91 -0.02 1.77 16 Total: -1.00 -69.76 350.41 6.69 -63.06 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.95 Total: 12.29 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 4.31 Total: -28.43 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: 0.67 Total: -81.25 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.88 Total: 42.75 kcal Atomic # 16 Polarization: -7.29 SS G_CDS: -1.13 Total: -8.42 kcal Total: -69.76 6.69 -63.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280192318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.648 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds